Wall clock time and date at job start Tue Mar 31 2020 06:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47322 * 2 1 4 4 H 1.09001 * 109.47214 * 179.82096 * 3 2 1 5 5 C 1.50701 * 109.47035 * 299.82429 * 3 2 1 6 6 H 1.07994 * 119.99935 * 120.00114 * 5 3 2 7 7 C 1.37874 * 119.99746 * 299.99730 * 5 3 2 8 8 N 1.31516 * 120.00207 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99717 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47151 * 90.00487 * 9 7 5 11 11 H 1.48503 * 109.47284 * 209.99964 * 9 7 5 12 12 H 1.48493 * 109.47330 * 330.00226 * 9 7 5 13 13 N 1.46901 * 109.47220 * 59.82489 * 3 2 1 14 14 C 1.46900 * 110.99986 * 85.92382 * 13 3 2 15 15 C 1.50709 * 109.46905 * 175.56868 * 14 13 3 16 16 C 1.38409 * 119.84410 * 89.99846 * 15 14 13 17 17 C 1.38126 * 120.18491 * 179.70144 * 16 15 14 18 18 C 1.38607 * 119.82335 * 0.27840 * 17 16 15 19 19 C 1.39467 * 120.03520 * 359.97438 * 18 17 16 20 20 C 1.38129 * 119.84201 * 270.29820 * 15 14 13 21 21 O 1.35562 * 107.27635 * 180.02562 * 19 18 17 22 22 C 1.34239 * 109.17716 * 359.97438 * 21 19 18 23 23 O 1.21593 * 125.27476 * 180.02562 * 22 21 19 24 24 N 1.34773 * 109.45070 * 0.02562 * 22 21 19 25 25 C 1.46502 * 126.25416 * 179.97438 * 24 22 21 26 26 H 1.08999 * 109.47354 * 295.59407 * 1 2 3 27 27 H 1.09002 * 109.46555 * 55.59333 * 1 2 3 28 28 H 1.08997 * 109.47246 * 175.58938 * 1 2 3 29 29 H 1.08996 * 109.47382 * 239.99703 * 2 1 3 30 30 H 1.09004 * 109.47166 * 119.99492 * 2 1 3 31 31 H 0.97005 * 119.99637 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00144 * 209.88426 * 13 3 2 33 33 H 1.08999 * 109.47015 * 55.57119 * 14 13 3 34 34 H 1.09001 * 109.47383 * 295.56613 * 14 13 3 35 35 H 1.08003 * 119.90382 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.08588 * 180.30091 * 17 16 15 37 37 H 1.07994 * 120.04059 * 0.02562 * 20 15 14 38 38 H 1.09000 * 109.46898 * 270.02043 * 25 24 22 39 39 H 1.09001 * 109.47042 * 30.02143 * 25 24 22 40 40 H 1.09000 * 109.46777 * 150.02262 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5413 2.1517 -1.2326 6 1 0.9202 3.0298 -1.1362 7 6 1.8780 1.6793 -2.4834 8 7 2.6341 0.6096 -2.6008 9 14 1.2592 2.5579 -4.0113 10 1 2.2381 3.5994 -4.4140 11 1 1.0976 1.5775 -5.1149 12 1 -0.0499 3.1952 -3.7198 13 7 1.5470 2.1363 1.1973 14 6 2.4392 1.9094 2.3421 15 6 1.9627 2.7215 3.5189 16 6 1.0567 2.1750 4.4113 17 6 0.6200 2.9107 5.4957 18 6 1.0871 4.2018 5.6859 19 6 1.9960 4.7552 4.7843 20 6 2.4274 4.0098 3.6984 21 8 2.2749 6.0105 5.2134 22 6 1.5811 6.2573 6.3358 23 8 1.6125 7.2963 6.9666 24 7 0.8442 5.1749 6.6550 25 6 -0.0485 5.0443 7.8092 26 1 -0.3634 0.4439 0.9268 27 1 -0.3632 0.5807 -0.8479 28 1 -0.3633 -1.0246 -0.0790 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.8707 0.2771 -3.4808 32 1 1.4288 3.1227 1.0208 33 1 3.4526 2.2119 2.0784 34 1 2.4323 0.8514 2.6041 35 1 0.6936 1.1689 4.2616 36 1 -0.0832 2.4809 6.1936 37 1 3.1302 4.4337 2.9965 38 1 0.5096 4.6473 8.6571 39 1 -0.4543 6.0226 8.0672 40 1 -0.8651 4.3659 7.5619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352914873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:46 Heat of formation + Delta-G solvation = -17.692411 kcal Electronic energy + Delta-G solvation = -22592.011076 eV Core-core repulsion = 19179.973483 eV Total energy + Delta-G solvation = -3412.037594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.34937 -38.97292 -37.71095 -36.58715 -35.76344 -32.90462 -31.22100 -30.60017 -29.65787 -28.21932 -26.40709 -24.33021 -23.57755 -23.13848 -21.91339 -21.62527 -19.08542 -18.42729 -17.84962 -17.61867 -16.64227 -16.18379 -15.31079 -15.00682 -14.90169 -14.45062 -14.33846 -14.09164 -13.80315 -13.77509 -13.24982 -13.20321 -12.85451 -12.40099 -12.22245 -12.12695 -11.81524 -11.40504 -11.32512 -11.08137 -10.94947 -10.82342 -10.60876 -10.41818 -10.09278 -9.76217 -9.43243 -8.91169 -8.83824 -8.51160 -8.17608 -7.33631 -6.06209 -4.11901 0.96904 1.06478 1.91493 2.30456 2.70441 3.27121 3.34617 3.37767 3.45719 4.18723 4.31347 4.37471 4.75392 4.86106 4.91389 5.05721 5.13135 5.19180 5.22379 5.25178 5.49440 5.62603 5.71556 5.93431 6.06791 6.11147 6.16493 6.46012 6.50673 6.57839 6.63955 6.80847 7.05737 7.17721 7.23472 7.43474 7.46291 7.69437 7.74335 7.79049 8.20189 8.30749 8.58155 8.96448 9.53323 10.99534 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.003331 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.203634 B = 8403.477068 C = 8990.225794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.003 0.997 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.097 3.903 15 C -0.052 4.052 16 C -0.075 4.075 17 C -0.102 4.102 18 C 0.057 3.943 19 C 0.033 3.967 20 C -0.074 4.074 21 O -0.236 6.236 22 C 0.633 3.367 23 O -0.497 6.497 24 N -0.550 5.550 25 C 0.102 3.898 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.013 0.987 29 H 0.087 0.913 30 H 0.010 0.990 31 H 0.261 0.739 32 H 0.333 0.667 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 2.175 17.451 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.020 0.980 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.311 5.311 14 C -0.032 4.032 15 C -0.053 4.053 16 C -0.095 4.095 17 C -0.122 4.122 18 C -0.040 4.040 19 C -0.013 4.013 20 C -0.094 4.094 21 O -0.142 6.142 22 C 0.389 3.611 23 O -0.381 6.381 24 N -0.283 5.283 25 C -0.038 4.038 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.105 0.895 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.150 0.850 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.934 2.332 17.795 18.374 hybrid contribution 0.368 1.056 -0.991 1.494 sum -3.566 3.388 16.804 17.509 Atomic orbital electron populations 1.21450 0.97488 0.97420 1.01359 1.21440 0.95042 0.98162 0.99509 1.19184 0.93071 0.91502 0.85429 0.97982 1.21171 1.31772 1.12026 0.90282 0.92256 1.24873 0.95008 0.94967 0.98931 1.69878 1.36617 1.22623 1.23573 0.86581 0.79289 0.79351 0.82710 1.20792 1.21243 1.19841 1.60836 1.48197 1.16194 1.05825 1.20948 0.94691 0.98486 0.89125 1.19888 0.95963 0.92729 0.96768 1.20969 0.95663 1.00488 0.92346 1.20050 1.01999 0.90306 0.99889 1.18507 1.01069 0.93114 0.91341 1.18928 1.00635 0.83266 0.98469 1.19991 1.01649 0.92872 0.94844 1.84986 1.60300 1.30464 1.38431 1.18525 0.78552 0.84141 0.79888 1.91130 1.67902 1.25939 1.53125 1.45646 1.43497 1.13269 1.25867 1.21772 0.92515 1.04433 0.85104 0.93955 0.92506 0.96798 0.89495 0.97130 0.92913 0.84990 0.94722 0.90312 0.84001 0.84972 0.84196 0.90934 0.89268 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.52 37.16 0.35 -2.17 16 2 C -0.10 -2.33 5.59 -26.73 -0.15 -2.48 16 3 C 0.22 4.97 2.30 -68.86 -0.16 4.81 16 4 H 0.00 0.07 7.71 -51.93 -0.40 -0.34 16 5 C -0.51 -13.13 7.26 -34.44 -0.25 -13.38 16 6 H 0.06 1.51 7.60 -52.49 -0.40 1.12 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 8 N -0.89 -24.25 11.32 55.43 0.63 -23.63 16 9 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.68 -12.78 5.64 -109.21 -0.62 -13.39 16 14 C 0.10 1.48 5.65 -4.97 -0.03 1.45 16 15 C -0.05 -0.67 5.35 -104.59 -0.56 -1.23 16 16 C -0.08 -0.83 9.69 -39.56 -0.38 -1.22 16 17 C -0.10 -1.01 10.03 -39.49 -0.40 -1.40 16 18 C 0.06 0.67 6.84 -83.79 -0.57 0.10 16 19 C 0.03 0.45 7.35 -38.99 -0.29 0.16 16 20 C -0.07 -0.96 9.71 -39.49 -0.38 -1.34 16 21 O -0.24 -3.53 10.72 -22.02 -0.24 -3.77 16 22 C 0.63 9.19 9.07 54.05 0.49 9.68 16 23 O -0.50 -8.28 17.81 -19.00 -0.34 -8.62 16 24 N -0.55 -6.28 3.21 -126.43 -0.41 -6.69 16 25 C 0.10 0.71 11.06 59.85 0.66 1.37 16 26 H 0.04 0.83 7.74 -51.93 -0.40 0.43 16 27 H 0.06 1.31 7.07 -51.93 -0.37 0.94 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 30 H 0.01 0.21 7.60 -51.93 -0.39 -0.18 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.33 6.30 8.13 -39.29 -0.32 5.98 16 33 H 0.03 0.55 7.89 -51.93 -0.41 0.14 16 34 H 0.08 1.18 7.55 -51.93 -0.39 0.79 16 35 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -29.48 336.63 -8.16 -37.64 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.49 Total: 1.86 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.76 Total: -4.06 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.39 Total: -43.71 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -0.57 Total: -12.38 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.48 -8.16 -37.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352914873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.952 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds