Wall clock time and date at job start Tue Mar 31 2020 06:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47322 * 2 1 4 4 H 1.09001 * 109.47214 * 179.82096 * 3 2 1 5 5 C 1.50701 * 109.47035 * 299.82429 * 3 2 1 6 6 H 1.07994 * 119.99935 * 120.00114 * 5 3 2 7 7 C 1.37874 * 119.99746 * 299.99730 * 5 3 2 8 8 N 1.31516 * 120.00207 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99717 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47151 * 90.00487 * 9 7 5 11 11 H 1.48503 * 109.47284 * 209.99964 * 9 7 5 12 12 H 1.48493 * 109.47330 * 330.00226 * 9 7 5 13 13 N 1.46901 * 109.47220 * 59.82489 * 3 2 1 14 14 C 1.46900 * 110.99986 * 85.92382 * 13 3 2 15 15 C 1.50709 * 109.46905 * 175.56868 * 14 13 3 16 16 C 1.38409 * 119.84410 * 89.99846 * 15 14 13 17 17 C 1.38126 * 120.18491 * 179.70144 * 16 15 14 18 18 C 1.38607 * 119.82335 * 0.27840 * 17 16 15 19 19 C 1.39467 * 120.03520 * 359.97438 * 18 17 16 20 20 C 1.38129 * 119.84201 * 270.29820 * 15 14 13 21 21 O 1.35562 * 107.27635 * 180.02562 * 19 18 17 22 22 C 1.34239 * 109.17716 * 359.97438 * 21 19 18 23 23 O 1.21593 * 125.27476 * 180.02562 * 22 21 19 24 24 N 1.34773 * 109.45070 * 0.02562 * 22 21 19 25 25 C 1.46502 * 126.25416 * 179.97438 * 24 22 21 26 26 H 1.08999 * 109.47354 * 295.59407 * 1 2 3 27 27 H 1.09002 * 109.46555 * 55.59333 * 1 2 3 28 28 H 1.08997 * 109.47246 * 175.58938 * 1 2 3 29 29 H 1.08996 * 109.47382 * 239.99703 * 2 1 3 30 30 H 1.09004 * 109.47166 * 119.99492 * 2 1 3 31 31 H 0.97005 * 119.99637 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00144 * 209.88426 * 13 3 2 33 33 H 1.08999 * 109.47015 * 55.57119 * 14 13 3 34 34 H 1.09001 * 109.47383 * 295.56613 * 14 13 3 35 35 H 1.08003 * 119.90382 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.08588 * 180.30091 * 17 16 15 37 37 H 1.07994 * 120.04059 * 0.02562 * 20 15 14 38 38 H 1.09000 * 109.46898 * 270.02043 * 25 24 22 39 39 H 1.09001 * 109.47042 * 30.02143 * 25 24 22 40 40 H 1.09000 * 109.46777 * 150.02262 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5413 2.1517 -1.2326 6 1 0.9202 3.0298 -1.1362 7 6 1.8780 1.6793 -2.4834 8 7 2.6341 0.6096 -2.6008 9 14 1.2592 2.5579 -4.0113 10 1 2.2381 3.5994 -4.4140 11 1 1.0976 1.5775 -5.1149 12 1 -0.0499 3.1952 -3.7198 13 7 1.5470 2.1363 1.1973 14 6 2.4392 1.9094 2.3421 15 6 1.9627 2.7215 3.5189 16 6 1.0567 2.1750 4.4113 17 6 0.6200 2.9107 5.4957 18 6 1.0871 4.2018 5.6859 19 6 1.9960 4.7552 4.7843 20 6 2.4274 4.0098 3.6984 21 8 2.2749 6.0105 5.2134 22 6 1.5811 6.2573 6.3358 23 8 1.6125 7.2963 6.9666 24 7 0.8442 5.1749 6.6550 25 6 -0.0485 5.0443 7.8092 26 1 -0.3634 0.4439 0.9268 27 1 -0.3632 0.5807 -0.8479 28 1 -0.3633 -1.0246 -0.0790 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.8707 0.2771 -3.4808 32 1 1.4288 3.1227 1.0208 33 1 3.4526 2.2119 2.0784 34 1 2.4323 0.8514 2.6041 35 1 0.6936 1.1689 4.2616 36 1 -0.0832 2.4809 6.1936 37 1 3.1302 4.4337 2.9965 38 1 0.5096 4.6473 8.6571 39 1 -0.4543 6.0226 8.0672 40 1 -0.8651 4.3659 7.5619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352914873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:46 Heat of formation + Delta-G solvation = -35.049370 kcal Electronic energy + Delta-G solvation = -22592.763730 eV Core-core repulsion = 19179.973483 eV Total energy + Delta-G solvation = -3412.790248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.35384 -40.01886 -38.84079 -37.92283 -36.99649 -34.53063 -32.82832 -31.63106 -30.84717 -29.11109 -28.04403 -25.76545 -24.85318 -24.56920 -22.80469 -22.71775 -20.87117 -19.45640 -18.83910 -18.64740 -18.25300 -17.43190 -16.83463 -16.27124 -16.04373 -15.68998 -15.37103 -15.17016 -15.06621 -15.03913 -14.65517 -14.41579 -13.92410 -13.78319 -13.45615 -13.24904 -13.15754 -12.84133 -12.77248 -12.56189 -12.36128 -12.33378 -12.09973 -11.87623 -11.56175 -11.47845 -11.19999 -10.72976 -10.49315 -9.82499 -9.19368 -8.90861 -8.06434 -6.17560 0.01999 0.11368 1.00695 1.24422 1.42979 1.45804 1.54268 1.73711 2.43902 2.52871 3.22944 3.28781 3.53713 3.73889 3.95734 4.03424 4.14813 4.28414 4.42642 4.46387 4.68342 4.69917 4.73144 4.75296 4.85019 4.89166 4.99029 5.04614 5.17156 5.22565 5.39101 5.46913 5.53914 5.59748 5.64427 5.76559 5.90906 5.97836 6.07576 6.36027 6.44398 6.52580 6.83895 7.06791 7.51148 8.98027 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.003331 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.203634 B = 8403.477068 C = 8990.225794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C 0.221 3.779 4 H -0.032 1.032 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.672 5.672 14 C 0.101 3.899 15 C -0.060 4.060 16 C -0.069 4.069 17 C -0.082 4.082 18 C 0.060 3.940 19 C 0.007 3.993 20 C -0.080 4.080 21 O -0.256 6.256 22 C 0.624 3.376 23 O -0.529 6.529 24 N -0.539 5.539 25 C 0.090 3.910 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.054 0.946 30 H 0.028 0.972 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.025 0.975 34 H 0.086 0.914 35 H 0.163 0.837 36 H 0.175 0.825 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 1.244 19.120 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.113 3.887 4 H -0.014 1.014 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.775 3.225 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.302 5.302 14 C -0.027 4.027 15 C -0.061 4.061 16 C -0.088 4.088 17 C -0.103 4.103 18 C -0.038 4.038 19 C -0.039 4.039 20 C -0.100 4.100 21 O -0.161 6.161 22 C 0.379 3.621 23 O -0.416 6.416 24 N -0.270 5.270 25 C -0.048 4.048 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.043 0.957 34 H 0.105 0.895 35 H 0.180 0.820 36 H 0.192 0.808 37 H 0.153 0.847 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.881 1.386 19.485 20.401 hybrid contribution 0.982 1.325 -1.441 2.190 sum -4.900 2.710 18.044 18.893 Atomic orbital electron populations 1.21314 0.95973 0.98241 1.00995 1.21312 0.96264 0.97441 0.98772 1.18960 0.90965 0.92276 0.86528 1.01398 1.21474 1.31221 1.11884 0.91470 0.92607 1.25550 0.95361 0.95630 1.01518 1.70007 1.37741 1.23803 1.23899 0.85706 0.78845 0.78284 0.79685 1.20649 1.21211 1.19357 1.60745 1.48689 1.15689 1.05110 1.20897 0.93697 0.99414 0.88731 1.19633 0.97372 0.92435 0.96683 1.21221 0.94429 1.01327 0.91807 1.20414 1.01357 0.88842 0.99652 1.18751 1.00475 0.93747 0.90785 1.19118 1.02114 0.83106 0.99512 1.19966 1.01888 0.93139 0.94962 1.84917 1.60795 1.31509 1.38928 1.18693 0.78998 0.84642 0.79742 1.91090 1.69151 1.27311 1.54095 1.45836 1.42843 1.11958 1.26408 1.22210 0.92917 1.05470 0.84208 0.92334 0.95031 0.95021 0.92738 0.95329 0.93109 0.85230 0.95679 0.89539 0.81958 0.80779 0.84705 0.89133 0.89325 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 9.52 71.98 0.69 -3.68 16 2 C -0.10 -4.44 5.59 30.59 0.17 -4.27 16 3 C 0.22 10.27 2.30 44.17 0.10 10.37 16 4 H -0.03 -1.65 7.71 -2.39 -0.02 -1.67 16 5 C -0.52 -26.89 7.26 25.60 0.19 -26.70 16 6 H 0.06 2.85 7.60 -2.91 -0.02 2.83 16 7 C 0.02 0.99 5.30 84.65 0.45 1.44 16 8 N -0.91 -50.86 11.32 21.45 0.24 -50.61 16 9 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.67 -24.81 5.64 -499.44 -2.81 -27.62 16 14 C 0.10 3.01 5.65 85.56 0.48 3.50 16 15 C -0.06 -1.44 5.35 -19.85 -0.11 -1.55 16 16 C -0.07 -1.26 9.69 22.28 0.22 -1.05 16 17 C -0.08 -1.26 10.03 22.33 0.22 -1.04 16 18 C 0.06 1.26 6.84 38.31 0.26 1.52 16 19 C 0.01 0.19 7.35 22.65 0.17 0.36 16 20 C -0.08 -2.05 9.71 22.33 0.22 -1.83 16 21 O -0.26 -7.76 10.72 8.40 0.09 -7.67 16 22 C 0.62 17.97 9.07 129.79 1.18 19.14 16 23 O -0.53 -17.88 17.81 19.21 0.34 -17.54 16 24 N -0.54 -11.15 3.21 -784.50 -2.52 -13.67 16 25 C 0.09 0.96 11.06 127.77 1.41 2.37 16 26 H 0.06 2.15 7.74 -2.39 -0.02 2.13 16 27 H 0.03 1.41 7.07 -2.39 -0.02 1.39 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 2.82 6.06 -2.39 -0.01 2.80 16 30 H 0.03 1.14 7.60 -2.38 -0.02 1.12 16 31 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 32 H 0.33 12.45 8.13 -89.69 -0.73 11.72 16 33 H 0.03 0.80 7.89 -2.39 -0.02 0.78 16 34 H 0.09 2.44 7.55 -2.39 -0.02 2.42 16 35 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 1.00 8.06 -2.39 -0.02 0.98 16 40 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -65.23 336.63 3.34 -61.89 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.33 Total: 12.14 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.65 Total: -1.42 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -5.09 Total: -91.90 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: 0.43 Total: -25.21 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -65.23 3.34 -61.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352914873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.839 kcal (2) G-P(sol) polarization free energy of solvation -65.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds