Wall clock time and date at job start Tue Mar 31 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47095 * 2 1 4 4 C 1.50704 * 109.46613 * 180.02562 * 3 2 1 5 5 C 1.38173 * 119.54791 * 125.00605 * 4 3 2 6 6 C 1.39793 * 118.99798 * 179.97438 * 5 4 3 7 7 C 1.48156 * 120.92403 * 179.97438 * 6 5 4 8 8 O 1.21516 * 119.99696 * 7.65782 * 7 6 5 9 9 N 1.34771 * 120.00026 * 187.65351 * 7 6 5 10 10 C 1.47580 * 134.48887 * 176.91702 * 9 7 6 11 11 C 1.53954 * 86.11615 * 204.65862 * 10 9 7 12 12 O 1.42903 * 113.73812 * 90.73646 * 11 10 9 13 13 C 1.50700 * 113.73985 * 221.93985 * 11 10 9 14 14 H 1.07998 * 120.00205 * 358.07570 * 13 11 10 15 15 C 1.37876 * 119.99639 * 178.07406 * 13 11 10 16 16 N 1.31515 * 119.99974 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00148 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47292 * 89.99700 * 17 15 13 19 19 H 1.48500 * 109.47449 * 210.00276 * 17 15 13 20 20 H 1.48503 * 109.46914 * 330.00137 * 17 15 13 21 21 C 1.47929 * 134.50548 * 356.94530 * 9 7 6 22 22 C 1.39842 * 118.15491 * 0.25312 * 6 5 4 23 23 C 1.38125 * 119.00407 * 359.51881 * 22 6 5 24 24 N 1.31796 * 119.55479 * 305.02468 * 4 3 2 25 25 H 1.09000 * 109.47183 * 59.99318 * 1 2 3 26 26 H 1.08998 * 109.47499 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47007 * 299.99863 * 1 2 3 28 28 H 1.09007 * 109.46730 * 240.00373 * 2 1 3 29 29 H 1.09000 * 109.47183 * 120.00682 * 2 1 3 30 30 H 1.08999 * 109.46712 * 60.00491 * 3 2 1 31 31 H 1.08992 * 109.47074 * 300.00320 * 3 2 1 32 32 H 1.07999 * 120.50238 * 0.02562 * 5 4 3 33 33 H 1.08999 * 113.77316 * 90.35794 * 10 9 7 34 34 H 1.09003 * 113.87398 * 318.97221 * 10 9 7 35 35 H 0.96705 * 113.99262 * 181.92318 * 12 11 10 36 36 H 0.97004 * 120.00056 * 180.02562 * 16 15 13 37 37 H 1.09003 * 113.86696 * 41.07962 * 21 9 7 38 38 H 1.08998 * 113.76744 * 269.58685 * 21 9 7 39 39 H 1.07999 * 120.49580 * 179.72452 * 22 6 5 40 40 H 1.07996 * 119.55209 * 180.22966 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2281 2.1320 -0.9854 6 6 5.6260 2.1247 -0.9747 7 6 6.3991 2.8492 -2.0102 8 8 5.8264 3.5732 -2.8005 9 7 7.7375 2.7054 -2.0756 10 6 8.7889 3.2097 -2.9802 11 6 9.6074 1.9809 -2.5439 12 8 9.4114 0.8347 -3.3745 13 6 11.0622 2.2802 -2.2893 14 1 11.4441 3.2779 -2.4481 15 6 11.9057 1.2803 -1.8537 16 7 11.4407 0.0654 -1.6608 17 14 13.7092 1.6510 -1.5387 18 1 13.8881 2.0758 -0.1271 19 1 14.5173 0.4318 -1.7951 20 1 14.1560 2.7403 -2.4438 21 6 8.7429 1.9783 -1.2701 22 6 6.2743 1.4095 0.0371 23 6 5.5145 0.7520 0.9849 24 7 4.1975 0.7842 0.9378 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.6886 2.6694 -1.7513 33 1 9.2209 4.1596 -2.6654 34 1 8.5074 3.1988 -4.0332 35 1 9.9011 0.0521 -3.0867 36 1 12.0340 -0.6380 -1.3539 37 1 8.4231 0.9841 -0.9583 38 1 9.1614 2.5674 -0.4540 39 1 7.3529 1.3747 0.0789 40 1 6.0061 0.2001 1.7723 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355884271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:51 Heat of formation + Delta-G solvation = -19.086367 kcal Electronic energy + Delta-G solvation = -22730.874539 eV Core-core repulsion = 19318.776499 eV Total energy + Delta-G solvation = -3412.098040 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54495 -39.27110 -37.38124 -35.27739 -34.08201 -32.45062 -32.29622 -31.36384 -28.74459 -27.11859 -25.77820 -25.51647 -23.68448 -22.76421 -21.51745 -20.00494 -18.79083 -17.59948 -16.91039 -16.45911 -15.92838 -15.30283 -15.23516 -14.99288 -14.78205 -14.46843 -14.21427 -13.99670 -13.80087 -13.19885 -13.00559 -12.69260 -12.59375 -12.25948 -12.07464 -11.95652 -11.65536 -11.37477 -11.31973 -11.13687 -10.99365 -10.82364 -10.58376 -10.38097 -9.99912 -9.70125 -9.45979 -9.29293 -8.91247 -8.85332 -8.47406 -7.99035 -6.46948 -4.57428 0.91021 1.16000 3.09941 3.18704 3.20647 3.22412 3.31871 3.97833 4.12864 4.24880 4.56766 4.70448 4.79059 4.93483 4.94703 5.13135 5.16570 5.18660 5.42488 5.48262 5.57860 5.65602 5.67025 5.76655 5.79663 5.89909 5.93647 6.06085 6.13165 6.16054 6.21900 6.29340 6.34253 6.49646 6.54170 6.72150 6.98625 7.55486 7.72680 7.97908 8.26780 8.46180 8.55677 9.13920 9.33392 10.59867 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.003533 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.259986 B = 7924.465346 C = 8429.957366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.066 4.066 4 C 0.118 3.882 5 C -0.119 4.119 6 C -0.070 4.070 7 C 0.567 3.433 8 O -0.556 6.556 9 N -0.622 5.622 10 C 0.114 3.886 11 C 0.240 3.760 12 O -0.571 6.571 13 C -0.538 4.538 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.908 3.092 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.067 3.933 22 C -0.158 4.158 23 C 0.097 3.903 24 N -0.472 5.472 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.393 0.607 36 H 0.274 0.726 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.158 0.842 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 -0.263 5.835 13.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.104 4.104 4 C -0.020 4.020 5 C -0.140 4.140 6 C -0.081 4.081 7 C 0.357 3.643 8 O -0.436 6.436 9 N -0.354 5.354 10 C -0.008 4.008 11 C 0.199 3.801 12 O -0.383 6.383 13 C -0.576 4.576 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.735 3.265 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.055 4.055 22 C -0.178 4.178 23 C -0.060 4.060 24 N -0.182 5.182 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.176 0.824 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.233 -0.086 5.770 14.436 hybrid contribution 1.901 0.148 0.008 1.907 sum -11.332 0.062 5.778 12.720 Atomic orbital electron populations 1.21783 0.95759 1.01650 1.01721 1.21443 0.95374 0.95710 1.02933 1.20550 0.88249 0.98414 1.03156 1.21180 0.96711 0.93408 0.90676 1.22090 0.93349 0.99070 0.99452 1.20447 0.94147 0.97632 0.95832 1.17811 0.81139 0.81440 0.83938 1.90706 1.69507 1.40372 1.43059 1.50150 1.03542 1.49525 1.32210 1.23521 0.83785 0.98746 0.94732 1.19838 0.91809 0.83563 0.84919 1.86075 1.73657 1.23655 1.54932 1.21481 0.92996 0.97189 1.45964 0.90947 1.25070 0.99768 0.94716 0.93455 1.69391 1.36731 1.01636 1.45955 0.86322 0.83225 0.78177 0.78764 1.20285 1.20873 1.19533 1.24638 0.86035 0.95524 0.99293 1.23189 1.03593 0.96420 0.94587 1.22727 0.89040 0.96677 0.97569 1.67280 1.10280 1.17093 1.23559 0.92779 0.92711 0.92703 0.92147 0.90817 0.90039 0.90300 0.83924 0.89273 0.90830 0.75265 0.91592 0.90290 0.89353 0.82436 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.16 5.79 -26.73 -0.15 -1.31 16 3 C -0.07 -0.70 5.61 -27.88 -0.16 -0.85 16 4 C 0.12 1.64 6.18 -82.63 -0.51 1.13 16 5 C -0.12 -1.86 9.28 -39.02 -0.36 -2.22 16 6 C -0.07 -1.23 5.91 -104.64 -0.62 -1.84 16 7 C 0.57 11.75 8.01 -12.19 -0.10 11.65 16 8 O -0.56 -12.79 17.20 5.35 0.09 -12.69 16 9 N -0.62 -12.86 3.62 -179.00 -0.65 -13.51 16 10 C 0.11 2.40 8.23 -2.96 -0.02 2.37 16 11 C 0.24 5.50 1.40 -90.84 -0.13 5.37 16 12 O -0.57 -14.15 13.49 -35.23 -0.48 -14.63 16 13 C -0.54 -12.89 8.61 -34.44 -0.30 -13.19 16 14 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 16 N -0.90 -21.68 11.20 55.43 0.62 -21.06 16 17 Si 0.91 18.79 29.54 -169.99 -5.02 13.76 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 C 0.07 1.35 6.04 -2.77 -0.02 1.34 16 22 C -0.16 -2.48 9.22 -39.02 -0.36 -2.84 16 23 C 0.10 1.35 11.17 -17.59 -0.20 1.15 16 24 N -0.47 -6.81 9.85 -9.52 -0.09 -6.91 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 32 H 0.14 2.12 7.65 -52.49 -0.40 1.72 16 33 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16 34 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.39 9.77 6.60 45.56 0.30 10.07 16 36 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 37 H 0.08 1.56 6.23 -51.93 -0.32 1.24 16 38 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 39 H 0.16 2.46 3.93 -52.49 -0.21 2.25 16 40 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -27.70 336.40 -7.90 -35.60 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -4.80 Total: 12.80 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.65 Total: 1.56 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: -0.12 Total: -41.48 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.38 Total: -27.32 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.70 -7.90 -35.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355884271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.516 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds