Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47095 * 2 1 4 4 C 1.50704 * 109.46613 * 180.02562 * 3 2 1 5 5 C 1.38173 * 119.54791 * 125.00605 * 4 3 2 6 6 C 1.39793 * 118.99798 * 179.97438 * 5 4 3 7 7 C 1.48156 * 120.92403 * 179.97438 * 6 5 4 8 8 O 1.21516 * 119.99696 * 7.65782 * 7 6 5 9 9 N 1.34771 * 120.00026 * 187.65351 * 7 6 5 10 10 C 1.47580 * 134.48887 * 176.91702 * 9 7 6 11 11 C 1.53954 * 86.11615 * 204.65862 * 10 9 7 12 12 O 1.42903 * 113.73812 * 90.73646 * 11 10 9 13 13 C 1.50700 * 113.73985 * 221.93985 * 11 10 9 14 14 H 1.07998 * 120.00205 * 358.07570 * 13 11 10 15 15 C 1.37876 * 119.99639 * 178.07406 * 13 11 10 16 16 N 1.31515 * 119.99974 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00148 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47292 * 89.99700 * 17 15 13 19 19 H 1.48500 * 109.47449 * 210.00276 * 17 15 13 20 20 H 1.48503 * 109.46914 * 330.00137 * 17 15 13 21 21 C 1.47929 * 134.50548 * 356.94530 * 9 7 6 22 22 C 1.39842 * 118.15491 * 0.25312 * 6 5 4 23 23 C 1.38125 * 119.00407 * 359.51881 * 22 6 5 24 24 N 1.31796 * 119.55479 * 305.02468 * 4 3 2 25 25 H 1.09000 * 109.47183 * 59.99318 * 1 2 3 26 26 H 1.08998 * 109.47499 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47007 * 299.99863 * 1 2 3 28 28 H 1.09007 * 109.46730 * 240.00373 * 2 1 3 29 29 H 1.09000 * 109.47183 * 120.00682 * 2 1 3 30 30 H 1.08999 * 109.46712 * 60.00491 * 3 2 1 31 31 H 1.08992 * 109.47074 * 300.00320 * 3 2 1 32 32 H 1.07999 * 120.50238 * 0.02562 * 5 4 3 33 33 H 1.08999 * 113.77316 * 90.35794 * 10 9 7 34 34 H 1.09003 * 113.87398 * 318.97221 * 10 9 7 35 35 H 0.96705 * 113.99262 * 181.92318 * 12 11 10 36 36 H 0.97004 * 120.00056 * 180.02562 * 16 15 13 37 37 H 1.09003 * 113.86696 * 41.07962 * 21 9 7 38 38 H 1.08998 * 113.76744 * 269.58685 * 21 9 7 39 39 H 1.07999 * 120.49580 * 179.72452 * 22 6 5 40 40 H 1.07996 * 119.55209 * 180.22966 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2281 2.1320 -0.9854 6 6 5.6260 2.1247 -0.9747 7 6 6.3991 2.8492 -2.0102 8 8 5.8264 3.5732 -2.8005 9 7 7.7375 2.7054 -2.0756 10 6 8.7889 3.2097 -2.9802 11 6 9.6074 1.9809 -2.5439 12 8 9.4114 0.8347 -3.3745 13 6 11.0622 2.2802 -2.2893 14 1 11.4441 3.2779 -2.4481 15 6 11.9057 1.2803 -1.8537 16 7 11.4407 0.0654 -1.6608 17 14 13.7092 1.6510 -1.5387 18 1 13.8881 2.0758 -0.1271 19 1 14.5173 0.4318 -1.7951 20 1 14.1560 2.7403 -2.4438 21 6 8.7429 1.9783 -1.2701 22 6 6.2743 1.4095 0.0371 23 6 5.5145 0.7520 0.9849 24 7 4.1975 0.7842 0.9378 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.6886 2.6694 -1.7513 33 1 9.2209 4.1596 -2.6654 34 1 8.5074 3.1988 -4.0332 35 1 9.9011 0.0521 -3.0867 36 1 12.0340 -0.6380 -1.3539 37 1 8.4231 0.9841 -0.9583 38 1 9.1614 2.5674 -0.4540 39 1 7.3529 1.3747 0.0789 40 1 6.0061 0.2001 1.7723 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355884271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = -36.684196 kcal Electronic energy + Delta-G solvation = -22731.637638 eV Core-core repulsion = 19318.776499 eV Total energy + Delta-G solvation = -3412.861139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89745 -40.75409 -39.06325 -36.21162 -35.84336 -34.16101 -33.71545 -32.38640 -30.41710 -28.09138 -27.47465 -27.11279 -25.01896 -23.88283 -22.50902 -21.54501 -20.32536 -19.35056 -18.36583 -17.92308 -17.16941 -16.99016 -16.59722 -16.46504 -15.96593 -15.84902 -15.66779 -15.18057 -14.84953 -14.75551 -14.46958 -14.17803 -13.86293 -13.74255 -13.43568 -13.17979 -12.97134 -12.80293 -12.68486 -12.27371 -12.24269 -12.16655 -12.05574 -11.65224 -11.56580 -11.13681 -10.98610 -10.70381 -10.61295 -10.17997 -10.02487 -9.69071 -8.27307 -6.43791 -0.39308 0.01400 1.47063 1.51517 1.59508 1.73343 1.74032 2.40735 2.73801 2.94431 3.17351 3.23353 3.62685 3.71012 3.90164 3.94151 4.07449 4.16415 4.18483 4.24413 4.39325 4.50675 4.57648 4.62006 4.69442 4.75384 4.78120 4.84097 4.90524 4.92828 5.01552 5.07130 5.20296 5.24233 5.35347 5.48632 5.58903 5.72251 5.90727 6.61671 6.63652 6.84062 6.92415 7.29253 7.42324 8.78808 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.003533 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.259986 B = 7924.465346 C = 8429.957366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.065 4.065 4 C 0.123 3.877 5 C -0.127 4.127 6 C -0.092 4.092 7 C 0.562 3.438 8 O -0.587 6.587 9 N -0.624 5.624 10 C 0.112 3.888 11 C 0.221 3.779 12 O -0.586 6.586 13 C -0.556 4.556 14 H 0.073 0.927 15 C 0.036 3.964 16 N -0.913 5.913 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.083 3.917 22 C -0.162 4.162 23 C 0.104 3.896 24 N -0.476 5.476 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.389 0.611 36 H 0.276 0.724 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.157 0.843 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.541 -0.483 7.382 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.103 4.103 4 C -0.014 4.014 5 C -0.147 4.147 6 C -0.103 4.103 7 C 0.353 3.647 8 O -0.470 6.470 9 N -0.356 5.356 10 C -0.010 4.010 11 C 0.180 3.820 12 O -0.398 6.398 13 C -0.594 4.594 14 H 0.091 0.909 15 C -0.165 4.165 16 N -0.553 5.553 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.038 4.038 22 C -0.182 4.182 23 C -0.053 4.053 24 N -0.186 5.186 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.163 0.837 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.243 0.757 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.174 0.826 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.828 -0.306 7.327 15.652 hybrid contribution 2.046 0.193 -0.485 2.112 sum -11.781 -0.113 6.842 13.624 Atomic orbital electron populations 1.21752 0.94015 1.02281 1.02467 1.21402 0.96856 0.94912 1.01963 1.20687 0.85872 0.99211 1.04536 1.21663 0.98291 0.91940 0.89528 1.22217 0.92667 0.99639 1.00207 1.20347 0.94842 0.99004 0.96057 1.18335 0.81022 0.81160 0.84192 1.90671 1.69968 1.41849 1.44527 1.50167 1.03773 1.49515 1.32115 1.23558 0.83926 0.99033 0.94454 1.20096 0.92226 0.83441 0.86217 1.86063 1.73699 1.24113 1.55902 1.21677 0.93776 0.97432 1.46472 0.90934 1.25696 1.02964 0.94605 0.93241 1.69449 1.37733 1.02085 1.46037 0.85416 0.79078 0.77629 0.78667 1.19625 1.21019 1.19765 1.24482 0.85002 0.95940 0.98398 1.23186 1.03631 0.96713 0.94706 1.23223 0.88892 0.95720 0.97458 1.67422 1.10492 1.17046 1.23601 0.92156 0.92194 0.91840 0.93219 0.91695 0.88601 0.88945 0.83742 0.87457 0.91914 0.75712 0.91393 0.89963 0.88034 0.82574 0.78971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.11 -2.04 5.79 30.60 0.18 -1.86 16 3 C -0.07 -1.24 5.61 29.85 0.17 -1.07 16 4 C 0.12 3.23 6.18 42.55 0.26 3.49 16 5 C -0.13 -3.87 9.28 22.63 0.21 -3.66 16 6 C -0.09 -3.21 5.91 -19.88 -0.12 -3.33 16 7 C 0.56 23.51 8.01 86.88 0.70 24.21 16 8 O -0.59 -27.52 17.20 -3.76 -0.06 -27.58 16 9 N -0.62 -25.92 3.62 -842.33 -3.05 -28.97 16 10 C 0.11 4.76 8.23 86.49 0.71 5.47 16 11 C 0.22 10.16 1.40 -10.88 -0.02 10.14 16 12 O -0.59 -29.46 13.49 -148.98 -2.01 -31.47 16 13 C -0.56 -26.44 8.61 25.60 0.22 -26.22 16 14 H 0.07 3.37 7.81 -2.91 -0.02 3.34 16 15 C 0.04 1.70 5.39 84.65 0.46 2.15 16 16 N -0.91 -43.71 11.20 21.45 0.24 -43.47 16 17 Si 0.97 37.86 29.54 68.60 2.03 39.89 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 19 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 21 C 0.08 3.34 6.04 86.42 0.52 3.86 16 22 C -0.16 -4.93 9.22 22.63 0.21 -4.72 16 23 C 0.10 2.67 11.17 84.67 0.95 3.62 16 24 N -0.48 -12.75 9.85 -184.04 -1.81 -14.56 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.06 1.28 7.94 -2.39 -0.02 1.26 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.51 7.87 -2.39 -0.02 1.50 16 32 H 0.14 4.27 7.65 -2.91 -0.02 4.25 16 33 H 0.11 4.10 8.09 -2.39 -0.02 4.08 16 34 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.39 19.66 6.60 -74.05 -0.49 19.18 16 36 H 0.28 12.57 8.31 -92.71 -0.77 11.80 16 37 H 0.08 3.23 6.23 -2.39 -0.01 3.21 16 38 H 0.10 3.77 8.09 -2.39 -0.02 3.75 16 39 H 0.16 4.72 3.93 -2.91 -0.01 4.71 16 40 H 0.19 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -58.32 336.40 1.07 -57.25 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: 0.57 Total: 38.11 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 5.16 Total: 10.81 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -4.62 Total: -87.00 kcal Atomic # 8 Polarization: -56.98 SS G_CDS: -2.07 Total: -59.05 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -58.32 1.07 -57.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355884271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.562 kcal (2) G-P(sol) polarization free energy of solvation -58.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds