Wall clock time and date at job start Tue Mar 31 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47454 * 2 1 4 4 C 1.50697 * 109.47286 * 120.00484 * 2 1 3 5 5 C 1.38606 * 119.54605 * 275.01897 * 4 2 1 6 6 C 1.38586 * 119.34764 * 179.74470 * 5 4 2 7 7 C 1.38627 * 118.49290 * 0.50349 * 6 5 4 8 8 C 1.39269 * 119.05614 * 359.47649 * 7 6 5 9 9 C 1.48173 * 119.72034 * 180.25908 * 8 7 6 10 10 O 1.21509 * 120.00299 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99876 * 180.02562 * 9 8 7 12 12 C 1.47067 * 136.05567 * 359.62724 * 11 9 8 13 13 C 1.53239 * 88.08292 * 207.20467 * 12 11 9 14 14 O 1.42902 * 114.19805 * 87.72907 * 13 12 11 15 15 C 1.50698 * 114.32916 * 220.47149 * 13 12 11 16 16 H 1.08004 * 119.99934 * 93.75953 * 15 13 12 17 17 C 1.37874 * 120.00076 * 273.75787 * 15 13 12 18 18 N 1.31517 * 120.00029 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99987 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47294 * 59.99938 * 19 17 15 21 21 H 1.48504 * 109.46861 * 180.02562 * 19 17 15 22 22 H 1.48511 * 109.46878 * 299.99731 * 19 17 15 23 23 C 1.47070 * 136.05682 * 179.97438 * 11 9 8 24 24 N 1.31494 * 119.55608 * 94.99980 * 4 2 1 25 25 H 1.09005 * 109.47049 * 299.99382 * 1 2 3 26 26 H 1.08994 * 109.47460 * 60.00003 * 1 2 3 27 27 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47297 * 240.00157 * 2 1 3 29 29 H 1.08995 * 109.47192 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46794 * 300.00421 * 3 2 1 31 31 H 1.09002 * 109.46740 * 59.99817 * 3 2 1 32 32 H 1.07997 * 120.32403 * 0.02562 * 5 4 2 33 33 H 1.08001 * 120.75451 * 180.27403 * 6 5 4 34 34 H 1.08002 * 120.47521 * 179.75905 * 7 6 5 35 35 H 1.08998 * 113.47014 * 321.93739 * 12 11 9 36 36 H 1.08997 * 113.46886 * 92.38227 * 12 11 9 37 37 H 0.96698 * 113.99633 * 86.30391 * 14 13 12 38 38 H 0.96996 * 119.99731 * 179.97438 * 18 17 15 39 39 H 1.09000 * 113.46560 * 267.62391 * 23 11 9 40 40 H 1.08997 * 113.46532 * 38.00544 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1607 -0.0101 2.4195 6 6 2.6180 -0.6689 3.5498 7 6 2.9429 -2.0125 3.4461 8 6 2.7887 -2.6529 2.2190 9 6 3.1261 -4.0902 2.0930 10 8 3.5349 -4.7053 3.0579 11 7 2.9795 -4.7154 0.9080 12 6 2.5258 -4.3385 -0.4391 13 6 2.1081 -5.7976 -0.6508 14 8 0.7821 -6.0970 -0.2102 15 6 2.4162 -6.3388 -2.0230 16 1 3.3399 -6.8700 -2.1991 17 6 1.5189 -6.1558 -3.0537 18 7 0.3943 -5.5085 -2.8394 19 14 1.9012 -6.8260 -4.7549 20 1 2.0666 -8.2999 -4.6807 21 1 0.7852 -6.4985 -5.6783 22 1 3.1561 -6.2118 -5.2585 23 6 3.1972 -6.0764 0.3947 24 7 2.3425 -1.9864 1.1613 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.9025 1.0375 2.4659 33 1 2.7225 -0.1463 4.4892 34 1 3.3060 -2.5562 4.3058 35 1 1.6856 -3.6441 -0.4357 36 1 3.3347 -4.0189 -1.0961 37 1 0.0987 -5.9203 -0.8711 38 1 -0.2368 -5.3795 -3.5646 39 1 4.1867 -6.2239 -0.0380 40 1 2.9277 -6.8569 1.1062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356574577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:53 Heat of formation + Delta-G solvation = -15.102808 kcal Electronic energy + Delta-G solvation = -23397.628890 eV Core-core repulsion = 19985.703590 eV Total energy + Delta-G solvation = -3411.925300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53791 -39.20092 -37.34399 -35.44164 -33.97755 -32.56611 -32.12647 -30.30035 -28.61011 -27.24297 -25.63153 -24.96138 -23.87271 -23.74532 -20.99069 -19.86483 -18.49848 -17.52189 -16.79681 -16.62059 -15.74466 -15.35631 -15.01361 -14.93270 -14.60814 -14.26514 -14.09619 -13.73156 -13.37969 -13.12233 -12.83007 -12.58144 -12.33188 -12.25870 -12.00760 -11.89339 -11.48975 -11.40594 -11.20114 -11.01580 -10.94372 -10.89942 -10.45167 -10.19477 -9.89604 -9.84165 -9.32945 -9.14542 -8.91349 -8.72146 -8.25032 -7.77642 -6.34424 -4.44355 0.83541 1.30676 3.14521 3.19335 3.24789 3.27073 3.49657 4.09850 4.14633 4.22792 4.60550 4.82287 4.92129 4.97574 5.02285 5.12823 5.18031 5.26675 5.47243 5.57418 5.65087 5.70532 5.75534 5.86124 5.91915 6.00039 6.07462 6.16082 6.22652 6.27723 6.30870 6.47660 6.62685 6.68267 6.76619 7.01993 7.19273 7.68456 7.87086 7.97942 8.48557 8.58131 8.76971 9.26175 9.56052 10.72306 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.005327 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.084662 B = 5255.130136 C = 6568.185786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C -0.145 4.145 4 C 0.134 3.866 5 C -0.158 4.158 6 C -0.083 4.083 7 C -0.126 4.126 8 C 0.101 3.899 9 C 0.584 3.416 10 O -0.561 6.561 11 N -0.610 5.610 12 C 0.090 3.910 13 C 0.235 3.765 14 O -0.572 6.572 15 C -0.533 4.533 16 H 0.071 0.929 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.908 3.092 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.105 3.895 24 N -0.441 5.441 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.393 0.607 38 H 0.274 0.726 39 H 0.087 0.913 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 13.781 5.119 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.203 4.203 4 C -0.007 4.007 5 C -0.178 4.178 6 C -0.109 4.109 7 C -0.146 4.146 8 C -0.037 4.037 9 C 0.372 3.628 10 O -0.442 6.442 11 N -0.340 5.340 12 C -0.033 4.033 13 C 0.194 3.806 14 O -0.385 6.385 15 C -0.571 4.571 16 H 0.089 0.911 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.017 4.017 24 N -0.152 5.152 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.608 12.960 5.464 14.157 hybrid contribution 0.004 0.447 -0.532 0.694 sum 1.612 13.407 4.932 14.376 Atomic orbital electron populations 1.21789 0.93430 1.02906 1.01705 1.20070 0.96399 0.95083 0.95181 1.21914 1.01238 0.95006 1.02117 1.21325 0.94837 0.89595 0.94927 1.22149 1.00782 1.01468 0.93395 1.21536 0.96529 0.94010 0.98847 1.22086 0.99017 0.95013 0.98528 1.21249 0.97820 0.94640 0.90010 1.17344 0.78691 0.84639 0.82173 1.90709 1.49423 1.66245 1.37798 1.49540 1.61090 1.14275 1.09102 1.24100 0.98640 1.02519 0.78060 1.19557 0.81404 0.89333 0.90353 1.86034 1.17026 1.88871 1.46617 1.21375 1.05646 1.37209 0.92865 0.91059 1.25058 0.94555 0.93613 0.99730 1.69269 1.09606 1.40911 1.33933 0.86388 0.78086 0.79607 0.82411 1.19872 1.21008 1.19908 1.23433 0.99890 0.83319 0.95043 1.67640 1.08503 1.08338 1.30749 0.92867 0.91829 0.91754 0.88717 0.92453 0.91781 0.92379 0.84524 0.84412 0.83723 0.90320 0.90536 0.75006 0.91603 0.89486 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.18 37.15 0.34 -1.27 16 2 C -0.05 -0.59 3.23 -91.78 -0.30 -0.88 16 3 C -0.15 -1.30 8.62 37.16 0.32 -0.98 16 4 C 0.13 1.93 5.79 -82.60 -0.48 1.45 16 5 C -0.16 -1.85 9.18 -39.32 -0.36 -2.21 16 6 C -0.08 -0.98 10.17 -39.31 -0.40 -1.38 16 7 C -0.13 -1.92 9.63 -39.05 -0.38 -2.29 16 8 C 0.10 1.91 6.75 -83.01 -0.56 1.35 16 9 C 0.58 12.99 8.06 -12.18 -0.10 12.90 16 10 O -0.56 -13.40 17.10 5.36 0.09 -13.30 16 11 N -0.61 -13.94 3.69 -186.34 -0.69 -14.63 16 12 C 0.09 2.06 6.89 -8.63 -0.06 2.00 16 13 C 0.24 5.85 1.57 -91.38 -0.14 5.71 16 14 O -0.57 -15.30 13.54 -35.23 -0.48 -15.78 16 15 C -0.53 -13.56 8.69 -34.44 -0.30 -13.86 16 16 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 17 C 0.07 1.83 5.39 -17.82 -0.10 1.74 16 18 N -0.90 -22.98 11.01 55.43 0.61 -22.37 16 19 Si 0.91 19.56 29.54 -169.99 -5.02 14.54 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 C 0.11 2.40 8.04 -8.48 -0.07 2.33 16 24 N -0.44 -8.01 7.94 -6.06 -0.05 -8.06 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.44 6.49 -51.93 -0.34 0.10 16 32 H 0.14 1.16 6.31 -52.49 -0.33 0.83 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.14 2.10 7.64 -52.49 -0.40 1.70 16 35 H 0.08 1.88 7.17 -51.93 -0.37 1.51 16 36 H 0.08 1.71 8.10 -51.93 -0.42 1.29 16 37 H 0.39 10.57 6.32 45.56 0.29 10.86 16 38 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 40 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -29.59 336.62 -7.96 -37.55 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -4.92 Total: 12.39 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.58 Total: 4.59 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.13 Total: -45.05 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.39 Total: -29.08 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.59 -7.96 -37.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356574577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.444 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds