Wall clock time and date at job start Tue Mar 31 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47454 * 2 1 4 4 C 1.50697 * 109.47286 * 120.00484 * 2 1 3 5 5 C 1.38606 * 119.54605 * 275.01897 * 4 2 1 6 6 C 1.38586 * 119.34764 * 179.74470 * 5 4 2 7 7 C 1.38627 * 118.49290 * 0.50349 * 6 5 4 8 8 C 1.39269 * 119.05614 * 359.47649 * 7 6 5 9 9 C 1.48173 * 119.72034 * 180.25908 * 8 7 6 10 10 O 1.21509 * 120.00299 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99876 * 180.02562 * 9 8 7 12 12 C 1.47067 * 136.05567 * 359.62724 * 11 9 8 13 13 C 1.53239 * 88.08292 * 207.20467 * 12 11 9 14 14 O 1.42902 * 114.19805 * 87.72907 * 13 12 11 15 15 C 1.50698 * 114.32916 * 220.47149 * 13 12 11 16 16 H 1.08004 * 119.99934 * 93.75953 * 15 13 12 17 17 C 1.37874 * 120.00076 * 273.75787 * 15 13 12 18 18 N 1.31517 * 120.00029 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99987 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47294 * 59.99938 * 19 17 15 21 21 H 1.48504 * 109.46861 * 180.02562 * 19 17 15 22 22 H 1.48511 * 109.46878 * 299.99731 * 19 17 15 23 23 C 1.47070 * 136.05682 * 179.97438 * 11 9 8 24 24 N 1.31494 * 119.55608 * 94.99980 * 4 2 1 25 25 H 1.09005 * 109.47049 * 299.99382 * 1 2 3 26 26 H 1.08994 * 109.47460 * 60.00003 * 1 2 3 27 27 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47297 * 240.00157 * 2 1 3 29 29 H 1.08995 * 109.47192 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46794 * 300.00421 * 3 2 1 31 31 H 1.09002 * 109.46740 * 59.99817 * 3 2 1 32 32 H 1.07997 * 120.32403 * 0.02562 * 5 4 2 33 33 H 1.08001 * 120.75451 * 180.27403 * 6 5 4 34 34 H 1.08002 * 120.47521 * 179.75905 * 7 6 5 35 35 H 1.08998 * 113.47014 * 321.93739 * 12 11 9 36 36 H 1.08997 * 113.46886 * 92.38227 * 12 11 9 37 37 H 0.96698 * 113.99633 * 86.30391 * 14 13 12 38 38 H 0.96996 * 119.99731 * 179.97438 * 18 17 15 39 39 H 1.09000 * 113.46560 * 267.62391 * 23 11 9 40 40 H 1.08997 * 113.46532 * 38.00544 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1607 -0.0101 2.4195 6 6 2.6180 -0.6689 3.5498 7 6 2.9429 -2.0125 3.4461 8 6 2.7887 -2.6529 2.2190 9 6 3.1261 -4.0902 2.0930 10 8 3.5349 -4.7053 3.0579 11 7 2.9795 -4.7154 0.9080 12 6 2.5258 -4.3385 -0.4391 13 6 2.1081 -5.7976 -0.6508 14 8 0.7821 -6.0970 -0.2102 15 6 2.4162 -6.3388 -2.0230 16 1 3.3399 -6.8700 -2.1991 17 6 1.5189 -6.1558 -3.0537 18 7 0.3943 -5.5085 -2.8394 19 14 1.9012 -6.8260 -4.7549 20 1 2.0666 -8.2999 -4.6807 21 1 0.7852 -6.4985 -5.6783 22 1 3.1561 -6.2118 -5.2585 23 6 3.1972 -6.0764 0.3947 24 7 2.3425 -1.9864 1.1613 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.9025 1.0375 2.4659 33 1 2.7225 -0.1463 4.4892 34 1 3.3060 -2.5562 4.3058 35 1 1.6856 -3.6441 -0.4357 36 1 3.3347 -4.0189 -1.0961 37 1 0.0987 -5.9203 -0.8711 38 1 -0.2368 -5.3795 -3.5646 39 1 4.1867 -6.2239 -0.0380 40 1 2.9277 -6.8569 1.1062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356574577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:52 Heat of formation + Delta-G solvation = -35.299022 kcal Electronic energy + Delta-G solvation = -23398.504664 eV Core-core repulsion = 19985.703590 eV Total energy + Delta-G solvation = -3412.801074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.86496 -40.83801 -39.10285 -36.45534 -35.94537 -34.13312 -33.70317 -31.52874 -30.33157 -28.07752 -27.41956 -26.83234 -25.15108 -24.85191 -22.38428 -21.31786 -20.12839 -19.40875 -18.27589 -17.95239 -17.17934 -16.88085 -16.76885 -16.56730 -15.92345 -15.73141 -15.42670 -15.01000 -14.76610 -14.46979 -14.44994 -13.96550 -13.81202 -13.59398 -13.41301 -13.29091 -12.81517 -12.79019 -12.76150 -12.44695 -12.22498 -12.16177 -12.08099 -11.80296 -11.56764 -11.10939 -10.92902 -10.70936 -10.54830 -10.13528 -10.05122 -9.60752 -8.26790 -6.44554 -0.38046 0.25223 1.48596 1.49698 1.57884 1.66085 1.85258 2.40721 2.80712 2.91015 2.97149 3.44663 3.69290 3.79021 4.00187 4.04208 4.14636 4.16872 4.28866 4.30442 4.38012 4.46763 4.59001 4.73599 4.78340 4.81799 4.83412 4.96734 4.97821 5.04553 5.08328 5.11652 5.22623 5.25013 5.37413 5.43703 5.64505 5.72185 5.89630 6.60345 6.69704 6.77060 7.09885 7.28722 7.46438 8.79820 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.005327 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.084662 B = 5255.130136 C = 6568.185786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 C -0.137 4.137 4 C 0.117 3.883 5 C -0.135 4.135 6 C -0.069 4.069 7 C -0.126 4.126 8 C 0.060 3.940 9 C 0.575 3.425 10 O -0.588 6.588 11 N -0.618 5.618 12 C 0.111 3.889 13 C 0.218 3.782 14 O -0.587 6.587 15 C -0.554 4.554 16 H 0.076 0.924 17 C 0.032 3.968 18 N -0.917 5.917 19 Si 0.974 3.026 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.267 1.267 23 C 0.106 3.894 24 N -0.478 5.478 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.146 0.854 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.389 0.611 38 H 0.277 0.723 39 H 0.107 0.893 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 16.708 5.396 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 C -0.195 4.195 4 C -0.024 4.024 5 C -0.155 4.155 6 C -0.094 4.094 7 C -0.148 4.148 8 C -0.077 4.077 9 C 0.365 3.635 10 O -0.470 6.470 11 N -0.348 5.348 12 C -0.012 4.012 13 C 0.176 3.824 14 O -0.400 6.400 15 C -0.592 4.592 16 H 0.094 0.906 17 C -0.169 4.169 18 N -0.558 5.558 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.017 4.017 24 N -0.189 5.189 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.200 0.800 33 H 0.204 0.796 34 H 0.164 0.836 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.245 0.755 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.805 15.888 5.753 16.993 hybrid contribution -0.100 -0.371 -0.564 0.682 sum 1.705 15.517 5.189 16.450 Atomic orbital electron populations 1.21761 0.93005 1.01077 1.03539 1.20146 0.96685 0.96814 0.93213 1.21882 1.01086 0.92491 1.04020 1.21862 0.94778 0.88666 0.97072 1.22642 0.97829 1.03192 0.91795 1.22056 0.94276 0.92248 1.00817 1.22249 0.98746 0.96760 0.97000 1.20883 1.01720 0.93047 0.92054 1.18072 0.77715 0.86382 0.81291 1.90659 1.50617 1.67501 1.38247 1.49597 1.61745 1.14098 1.09394 1.23760 0.98013 1.01007 0.78404 1.19827 0.80865 0.90595 0.91096 1.86016 1.17977 1.89172 1.46865 1.21607 1.06252 1.37968 0.93364 0.90578 1.25814 0.94282 0.93609 1.03151 1.69343 1.10194 1.41280 1.34969 0.85368 0.78057 0.78794 0.77976 1.19737 1.20608 1.19201 1.23445 1.00225 0.83544 0.94447 1.67477 1.09722 1.10451 1.31273 0.90759 0.90246 0.95364 0.91567 0.92642 0.90523 0.89867 0.80010 0.79558 0.83593 0.91820 0.90283 0.75527 0.91327 0.87522 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.18 71.98 0.66 -2.29 16 2 C -0.05 -1.14 3.23 -11.54 -0.04 -1.17 16 3 C -0.14 -1.98 8.62 71.98 0.62 -1.36 16 4 C 0.12 3.23 5.79 42.70 0.25 3.48 16 5 C -0.14 -2.61 9.18 22.44 0.21 -2.41 16 6 C -0.07 -1.35 10.17 22.45 0.23 -1.12 16 7 C -0.13 -3.72 9.63 22.61 0.22 -3.50 16 8 C 0.06 2.30 6.75 41.90 0.28 2.58 16 9 C 0.58 26.71 8.06 86.88 0.70 27.41 16 10 O -0.59 -29.14 17.10 -3.74 -0.06 -29.20 16 11 N -0.62 -29.53 3.69 -862.22 -3.18 -32.71 16 12 C 0.11 5.35 6.89 83.10 0.57 5.93 16 13 C 0.22 11.21 1.57 -11.28 -0.02 11.19 16 14 O -0.59 -32.83 13.54 -148.98 -2.02 -34.85 16 15 C -0.55 -28.72 8.69 25.60 0.22 -28.49 16 16 H 0.08 3.77 7.81 -2.91 -0.02 3.75 16 17 C 0.03 1.61 5.39 84.65 0.46 2.07 16 18 N -0.92 -47.90 11.01 21.45 0.24 -47.67 16 19 Si 0.97 40.06 29.54 68.60 2.03 42.08 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 23 C 0.11 4.99 8.04 83.19 0.67 5.66 16 24 N -0.48 -17.70 7.94 -173.08 -1.37 -19.07 16 25 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.03 0.79 8.14 -2.38 -0.02 0.78 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 0.79 6.49 -2.39 -0.02 0.77 16 32 H 0.18 1.88 6.31 -2.91 -0.02 1.86 16 33 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.15 4.15 7.64 -2.91 -0.02 4.13 16 35 H 0.06 3.23 7.17 -2.39 -0.02 3.21 16 36 H 0.08 3.69 8.10 -2.39 -0.02 3.67 16 37 H 0.39 21.89 6.32 -74.06 -0.47 21.42 16 38 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 39 H 0.11 4.53 8.10 -2.39 -0.02 4.51 16 40 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -67.74 336.62 1.24 -66.49 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.59 Total: 36.95 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 5.03 Total: 17.97 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -4.32 Total: -99.45 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -2.08 Total: -64.05 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.08 kcal Total: -67.74 1.24 -66.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356574577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.195 kcal (2) G-P(sol) polarization free energy of solvation -67.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds