Wall clock time and date at job start Tue Mar 31 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00316 * 2 1 4 4 O 1.42896 * 109.47285 * 134.99880 * 3 2 1 5 5 C 1.35652 * 117.00134 * 179.97438 * 4 3 2 6 6 C 1.39347 * 120.53757 * 0.26931 * 5 4 3 7 7 C 1.38306 * 118.43684 * 180.28363 * 6 5 4 8 8 C 1.38763 * 119.44417 * 359.73577 * 7 6 5 9 9 N 1.31382 * 121.06977 * 359.97044 * 8 7 6 10 10 C 1.32861 * 121.69446 * 0.02562 * 9 8 7 11 11 C 1.47830 * 119.78373 * 179.97438 * 10 9 8 12 12 O 1.21551 * 119.99914 * 180.02562 * 11 10 9 13 13 N 1.34775 * 119.99931 * 0.02562 * 11 10 9 14 14 C 1.46497 * 120.00077 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47031 * 324.99543 * 14 13 11 16 16 C 1.50699 * 109.47154 * 205.00032 * 14 13 11 17 17 H 1.08000 * 120.00147 * 359.97438 * 16 14 13 18 18 C 1.37878 * 120.00379 * 179.97438 * 16 14 13 19 19 N 1.31518 * 119.99761 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00461 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47273 * 89.99733 * 20 18 16 22 22 H 1.48496 * 109.47169 * 210.00187 * 20 18 16 23 23 H 1.48505 * 109.46665 * 329.99637 * 20 18 16 24 24 C 1.52992 * 109.47408 * 84.99397 * 14 13 11 25 25 C 1.52997 * 109.47482 * 295.00294 * 24 14 13 26 26 H 1.08010 * 120.00111 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00688 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99757 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46856 * 14.99563 * 3 2 1 30 30 H 1.08997 * 109.47083 * 254.99799 * 3 2 1 31 31 H 1.07996 * 120.78156 * 0.02562 * 6 5 4 32 32 H 1.07993 * 120.27725 * 179.70308 * 7 6 5 33 33 H 1.08005 * 119.46907 * 180.02562 * 8 7 6 34 34 H 0.97001 * 119.99673 * 359.97438 * 13 11 10 35 35 H 0.96999 * 120.00301 * 180.02562 * 19 18 16 36 36 H 1.09002 * 109.47103 * 175.00047 * 24 14 13 37 37 H 1.08998 * 109.46862 * 55.00859 * 24 14 13 38 38 H 1.09002 * 109.47153 * 59.99783 * 25 24 14 39 39 H 1.09001 * 109.46832 * 299.99974 * 25 24 14 40 40 H 1.09004 * 109.47261 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9083 2.3428 1.0779 6 6 3.6630 3.4766 0.3058 7 6 4.4907 4.5732 0.4646 8 6 5.5290 4.5169 1.3834 9 7 5.7380 3.4391 2.1051 10 6 4.9702 2.3611 1.9884 11 6 5.2439 1.1709 2.8214 12 8 4.5442 0.1824 2.7175 13 7 6.2692 1.1819 3.6960 14 6 6.5408 0.0022 4.5211 15 1 5.6000 -0.4798 4.7867 16 6 7.2619 0.4221 5.7760 17 1 7.4949 1.4635 5.9422 18 6 7.6241 -0.5231 6.7121 19 7 7.3399 -1.7913 6.5101 20 14 8.5185 -0.0028 8.2673 21 1 7.5270 0.3071 9.3284 22 1 9.4024 -1.1057 8.7226 23 1 9.3372 1.2041 7.9871 24 6 7.4129 -0.9795 3.7360 25 6 6.6326 -1.5015 2.5279 26 1 -0.5401 0.9354 0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4756 1.4867 -0.9926 31 1 2.8484 3.4969 -0.4029 32 1 4.3305 5.4657 -0.1220 33 1 6.1753 5.3732 1.5080 34 1 6.8278 1.9706 3.7786 35 1 7.5944 -2.4563 7.1688 36 1 7.6886 -1.8152 4.3792 37 1 8.3146 -0.4714 3.3942 38 1 6.3569 -0.6658 1.8847 39 1 5.7309 -2.0097 2.8698 40 1 7.2542 -2.2006 1.9683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358065390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:30 Heat of formation + Delta-G solvation = -16.102602 kcal Electronic energy + Delta-G solvation = -23069.908923 eV Core-core repulsion = 19657.940269 eV Total energy + Delta-G solvation = -3411.968654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.78321 -38.59330 -38.14831 -34.93437 -34.23160 -32.64437 -31.98894 -30.85325 -30.22693 -27.04903 -26.74623 -24.50048 -23.01346 -22.68947 -20.76941 -20.00835 -19.19417 -18.34500 -17.63496 -16.99508 -16.23484 -16.00749 -15.22504 -15.02112 -14.86371 -14.49553 -14.23402 -14.05851 -13.61687 -13.20472 -12.99260 -12.82913 -12.58327 -12.08081 -11.82202 -11.64189 -11.39039 -11.18122 -11.15087 -10.87831 -10.76344 -10.23743 -10.08220 -9.89562 -9.83201 -9.66938 -9.51473 -8.94855 -8.90767 -8.40624 -8.39793 -7.63736 -6.03522 -4.11829 0.79239 1.21486 1.88847 3.21252 3.29507 3.31293 3.37428 3.40342 3.97058 4.24571 4.40347 4.47376 4.48634 4.69586 4.75963 4.84751 4.98545 5.09264 5.15677 5.23346 5.27955 5.62618 5.66161 5.87893 5.98168 6.30643 6.37075 6.45274 6.48826 6.56871 6.76402 7.15528 7.22725 7.30033 7.47693 7.58002 7.72222 7.79595 7.91575 8.03287 8.27552 8.83382 8.88899 9.27711 9.55427 11.01999 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.004412 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.438320 B = 6345.497986 C = 7381.949533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.078 3.922 4 O -0.261 6.261 5 C 0.132 3.868 6 C -0.180 4.180 7 C -0.119 4.119 8 C 0.054 3.946 9 N -0.419 5.419 10 C 0.060 3.940 11 C 0.553 3.447 12 O -0.523 6.523 13 N -0.688 5.688 14 C 0.270 3.730 15 H 0.050 0.950 16 C -0.531 4.531 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.127 4.127 25 C -0.137 4.137 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.397 0.603 35 H 0.263 0.737 36 H 0.099 0.901 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.050 0.950 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.982 10.515 -14.958 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.164 4.164 3 C 0.003 3.997 4 O -0.171 6.171 5 C 0.081 3.919 6 C -0.207 4.207 7 C -0.139 4.139 8 C -0.106 4.106 9 N -0.130 5.130 10 C -0.080 4.080 11 C 0.335 3.665 12 O -0.400 6.400 13 N -0.336 5.336 14 C 0.168 3.832 15 H 0.068 0.932 16 C -0.569 4.569 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.166 4.166 25 C -0.194 4.194 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.142 0.858 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.179 0.821 34 H 0.231 0.769 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.769 9.319 -14.196 19.112 hybrid contribution -0.038 0.965 -0.012 0.966 sum -8.807 10.284 -14.208 19.626 Atomic orbital electron populations 1.23824 0.95339 1.02372 0.99860 1.22658 0.95579 0.97941 1.00216 1.21946 0.88300 0.97237 0.92249 1.86505 1.40549 1.33301 1.56759 1.20069 0.91103 0.86824 0.93913 1.21695 1.02922 0.93616 1.02456 1.22113 0.94964 0.98482 0.98305 1.22700 0.97478 0.96434 0.94012 1.67725 1.24896 0.98888 1.21519 1.21324 0.93224 0.95302 0.98174 1.17559 0.82497 0.85408 0.81004 1.90802 1.48935 1.32601 1.67664 1.46357 1.29701 1.19454 1.38078 1.18820 0.96202 0.81183 0.86998 0.93237 1.21261 1.38314 0.94189 1.03149 0.91987 1.24875 0.95714 0.94784 0.98298 1.69902 1.46454 1.00497 1.35283 0.86460 0.79521 0.78204 0.82995 1.20636 1.21149 1.19815 1.21930 0.97272 1.01538 0.95837 1.21835 0.99621 0.99332 0.98606 0.88494 0.87411 0.85800 0.91618 0.91135 0.84106 0.84365 0.82097 0.76915 0.92672 0.88274 0.95004 0.94314 0.93098 0.95963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 14.31 29.02 0.42 -1.17 16 2 C -0.15 -1.62 9.89 -36.02 -0.36 -1.98 16 3 C 0.08 0.87 5.17 36.01 0.19 1.06 16 4 O -0.26 -4.30 8.18 -40.60 -0.33 -4.63 16 5 C 0.13 2.08 6.71 -38.55 -0.26 1.82 16 6 C -0.18 -2.04 9.13 -39.14 -0.36 -2.39 16 7 C -0.12 -1.17 10.10 -39.36 -0.40 -1.56 16 8 C 0.05 0.64 11.17 -17.55 -0.20 0.44 16 9 N -0.42 -6.80 9.54 -9.71 -0.09 -6.89 16 10 C 0.06 1.10 6.76 -82.88 -0.56 0.54 16 11 C 0.55 12.33 6.37 -12.34 -0.08 12.25 16 12 O -0.52 -12.95 12.27 -16.63 -0.20 -13.16 16 13 N -0.69 -15.86 5.01 -55.89 -0.28 -16.14 16 14 C 0.27 7.13 2.24 -69.09 -0.15 6.97 16 15 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 16 C -0.53 -14.59 8.73 -34.44 -0.30 -14.89 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 18 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 19 N -0.88 -25.28 11.30 55.43 0.63 -24.66 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.13 -3.23 5.45 -26.74 -0.15 -3.37 16 25 C -0.14 -3.20 8.51 37.16 0.32 -2.89 16 26 H 0.10 0.72 7.90 -52.48 -0.41 0.30 16 27 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.07 0.61 7.41 -51.93 -0.38 0.22 16 30 H 0.07 0.64 7.71 -51.93 -0.40 0.24 16 31 H 0.14 1.13 6.46 -52.49 -0.34 0.79 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.40 8.53 7.86 -40.82 -0.32 8.21 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.10 2.74 5.96 -51.93 -0.31 2.43 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 39 H 0.05 1.25 7.84 -51.93 -0.41 0.85 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -32.44 335.92 -7.56 -40.01 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.34 Total: 7.70 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.98 Total: -3.43 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.25 Total: -47.69 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.54 Total: -17.79 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.44 -7.56 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358065390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.907 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds