Wall clock time and date at job start Tue Mar 31 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00316 * 2 1 4 4 O 1.42896 * 109.47285 * 134.99880 * 3 2 1 5 5 C 1.35652 * 117.00134 * 179.97438 * 4 3 2 6 6 C 1.39347 * 120.53757 * 0.26931 * 5 4 3 7 7 C 1.38306 * 118.43684 * 180.28363 * 6 5 4 8 8 C 1.38763 * 119.44417 * 359.73577 * 7 6 5 9 9 N 1.31382 * 121.06977 * 359.97044 * 8 7 6 10 10 C 1.32861 * 121.69446 * 0.02562 * 9 8 7 11 11 C 1.47830 * 119.78373 * 179.97438 * 10 9 8 12 12 O 1.21551 * 119.99914 * 180.02562 * 11 10 9 13 13 N 1.34775 * 119.99931 * 0.02562 * 11 10 9 14 14 C 1.46497 * 120.00077 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47031 * 324.99543 * 14 13 11 16 16 C 1.50699 * 109.47154 * 205.00032 * 14 13 11 17 17 H 1.08000 * 120.00147 * 359.97438 * 16 14 13 18 18 C 1.37878 * 120.00379 * 179.97438 * 16 14 13 19 19 N 1.31518 * 119.99761 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00461 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47273 * 89.99733 * 20 18 16 22 22 H 1.48496 * 109.47169 * 210.00187 * 20 18 16 23 23 H 1.48505 * 109.46665 * 329.99637 * 20 18 16 24 24 C 1.52992 * 109.47408 * 84.99397 * 14 13 11 25 25 C 1.52997 * 109.47482 * 295.00294 * 24 14 13 26 26 H 1.08010 * 120.00111 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00688 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99757 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.46856 * 14.99563 * 3 2 1 30 30 H 1.08997 * 109.47083 * 254.99799 * 3 2 1 31 31 H 1.07996 * 120.78156 * 0.02562 * 6 5 4 32 32 H 1.07993 * 120.27725 * 179.70308 * 7 6 5 33 33 H 1.08005 * 119.46907 * 180.02562 * 8 7 6 34 34 H 0.97001 * 119.99673 * 359.97438 * 13 11 10 35 35 H 0.96999 * 120.00301 * 180.02562 * 19 18 16 36 36 H 1.09002 * 109.47103 * 175.00047 * 24 14 13 37 37 H 1.08998 * 109.46862 * 55.00859 * 24 14 13 38 38 H 1.09002 * 109.47153 * 59.99783 * 25 24 14 39 39 H 1.09001 * 109.46832 * 299.99974 * 25 24 14 40 40 H 1.09004 * 109.47261 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9083 2.3428 1.0779 6 6 3.6630 3.4766 0.3058 7 6 4.4907 4.5732 0.4646 8 6 5.5290 4.5169 1.3834 9 7 5.7380 3.4391 2.1051 10 6 4.9702 2.3611 1.9884 11 6 5.2439 1.1709 2.8214 12 8 4.5442 0.1824 2.7175 13 7 6.2692 1.1819 3.6960 14 6 6.5408 0.0022 4.5211 15 1 5.6000 -0.4798 4.7867 16 6 7.2619 0.4221 5.7760 17 1 7.4949 1.4635 5.9422 18 6 7.6241 -0.5231 6.7121 19 7 7.3399 -1.7913 6.5101 20 14 8.5185 -0.0028 8.2673 21 1 7.5270 0.3071 9.3284 22 1 9.4024 -1.1057 8.7226 23 1 9.3372 1.2041 7.9871 24 6 7.4129 -0.9795 3.7360 25 6 6.6326 -1.5015 2.5279 26 1 -0.5401 0.9354 0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4756 1.4867 -0.9926 31 1 2.8484 3.4969 -0.4029 32 1 4.3305 5.4657 -0.1220 33 1 6.1753 5.3732 1.5080 34 1 6.8278 1.9706 3.7786 35 1 7.5944 -2.4563 7.1688 36 1 7.6886 -1.8152 4.3792 37 1 8.3146 -0.4714 3.3942 38 1 6.3569 -0.6658 1.8847 39 1 5.7309 -2.0097 2.8698 40 1 7.2542 -2.2006 1.9683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358065390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:29 Heat of formation + Delta-G solvation = -37.785127 kcal Electronic energy + Delta-G solvation = -23070.849148 eV Core-core repulsion = 19657.940269 eV Total energy + Delta-G solvation = -3412.908879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.89997 -40.15388 -39.29111 -36.88169 -35.07974 -34.31063 -33.49486 -32.53333 -31.44187 -28.97934 -27.67326 -25.88749 -24.75462 -23.81294 -22.34979 -21.19367 -20.84724 -19.63615 -18.97363 -18.11046 -17.77913 -17.25726 -16.95452 -16.30919 -16.27541 -15.88241 -15.67237 -15.18816 -14.76550 -14.64368 -14.58415 -14.09904 -13.71390 -13.66801 -13.42762 -13.19174 -12.98241 -12.87576 -12.68638 -12.53489 -12.16656 -12.06347 -11.97085 -11.60390 -11.10748 -11.00462 -10.78989 -10.59363 -10.51401 -10.34833 -9.66407 -9.38208 -8.15347 -6.32801 -0.27658 0.27101 1.09826 1.44389 1.45504 1.56639 1.97201 2.28690 2.36310 2.59114 2.92833 3.13495 3.39308 3.62493 3.74746 3.92324 4.07058 4.07605 4.20107 4.32310 4.47403 4.49205 4.54897 4.55228 4.74651 4.90738 4.94544 5.02606 5.05977 5.23555 5.43373 5.46002 5.55246 5.59663 5.63908 5.66134 5.79240 5.94265 6.16294 6.28815 6.74057 6.77539 7.09286 7.33480 7.59011 8.90427 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.004412 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.438320 B = 6345.497986 C = 7381.949533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.183 4.183 3 C 0.073 3.927 4 O -0.303 6.303 5 C 0.122 3.878 6 C -0.171 4.171 7 C -0.087 4.087 8 C 0.051 3.949 9 N -0.446 5.446 10 C 0.008 3.992 11 C 0.548 3.452 12 O -0.562 6.562 13 N -0.692 5.692 14 C 0.278 3.722 15 H -0.002 1.002 16 C -0.550 4.550 17 H 0.067 0.933 18 C 0.017 3.983 19 N -0.914 5.914 20 Si 0.973 3.027 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.262 1.262 24 C -0.119 4.119 25 C -0.120 4.120 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.181 0.819 32 H 0.194 0.806 33 H 0.198 0.802 34 H 0.404 0.596 35 H 0.266 0.734 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.027 0.973 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 13.962 -16.657 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.201 4.201 3 C -0.001 4.001 4 O -0.214 6.214 5 C 0.071 3.929 6 C -0.197 4.197 7 C -0.107 4.107 8 C -0.111 4.111 9 N -0.158 5.158 10 C -0.129 4.129 11 C 0.334 3.666 12 O -0.441 6.441 13 N -0.340 5.340 14 C 0.175 3.825 15 H 0.016 0.984 16 C -0.588 4.588 17 H 0.085 0.915 18 C -0.183 4.183 19 N -0.553 5.553 20 Si 0.797 3.203 21 H -0.203 1.203 22 H -0.206 1.206 23 H -0.186 1.186 24 C -0.158 4.158 25 C -0.178 4.178 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.198 0.802 32 H 0.211 0.789 33 H 0.214 0.786 34 H 0.239 0.761 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.235 12.769 -15.911 22.394 hybrid contribution -0.027 0.005 0.384 0.385 sum -9.262 12.774 -15.527 22.137 Atomic orbital electron populations 1.24087 0.94504 1.03932 0.96547 1.22669 0.96537 0.97496 1.03375 1.22238 0.87643 0.97816 0.92366 1.86455 1.41905 1.34553 1.58452 1.20239 0.90454 0.88137 0.94110 1.22166 1.03863 0.92006 1.01654 1.22731 0.92250 0.99349 0.96323 1.23470 0.98487 0.95822 0.93339 1.67587 1.25371 0.99556 1.23246 1.20591 0.96627 0.94984 1.00664 1.18239 0.81181 0.86655 0.80553 1.90754 1.49887 1.34658 1.68798 1.46144 1.30763 1.18645 1.38469 1.18417 0.93694 0.82462 0.87896 0.98370 1.21557 1.38714 0.94596 1.03977 0.91512 1.25779 0.96308 0.94661 1.01573 1.70050 1.47167 1.01620 1.36421 0.85338 0.78263 0.78195 0.78502 1.20307 1.20551 1.18606 1.21770 0.97476 1.00585 0.95935 1.21644 0.98721 0.99450 0.97937 0.86190 0.86495 0.88202 0.89184 0.88984 0.80198 0.78919 0.78561 0.76147 0.92502 0.90583 0.94380 0.94512 0.95335 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 14.31 67.79 0.97 -1.56 16 2 C -0.18 -4.09 9.89 25.65 0.25 -3.83 16 3 C 0.07 1.56 5.17 71.24 0.37 1.93 16 4 O -0.30 -10.19 8.18 -68.68 -0.56 -10.75 16 5 C 0.12 3.76 6.71 22.94 0.15 3.92 16 6 C -0.17 -3.18 9.13 22.55 0.21 -2.97 16 7 C -0.09 -1.24 10.10 22.41 0.23 -1.01 16 8 C 0.05 1.03 11.17 84.89 0.95 1.98 16 9 N -0.45 -14.18 9.54 -184.62 -1.76 -15.94 16 10 C 0.01 0.29 6.76 41.93 0.28 0.57 16 11 C 0.55 26.06 6.37 86.78 0.55 26.61 16 12 O -0.56 -30.08 12.27 17.11 0.21 -29.87 16 13 N -0.69 -33.85 5.01 -449.01 -2.25 -36.10 16 14 C 0.28 15.67 2.24 44.24 0.10 15.77 16 15 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 16 C -0.55 -31.39 8.73 25.60 0.22 -31.17 16 17 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 18 C 0.02 0.95 5.29 84.65 0.45 1.40 16 19 N -0.91 -54.30 11.30 21.45 0.24 -54.06 16 20 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 24 C -0.12 -6.35 5.45 30.59 0.17 -6.19 16 25 C -0.12 -5.94 8.51 71.98 0.61 -5.32 16 26 H 0.12 1.41 7.90 -2.91 -0.02 1.38 16 27 H 0.12 1.66 8.06 -2.91 -0.02 1.64 16 28 H 0.10 2.64 8.06 -2.91 -0.02 2.61 16 29 H 0.09 1.40 7.41 -2.39 -0.02 1.39 16 30 H 0.09 1.46 7.71 -2.39 -0.02 1.45 16 31 H 0.18 1.86 6.46 -2.91 -0.02 1.84 16 32 H 0.19 0.74 8.06 -2.91 -0.02 0.71 16 33 H 0.20 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.40 18.23 7.86 -92.71 -0.73 17.50 16 35 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.08 4.43 5.96 -2.39 -0.01 4.42 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.80 5.65 -2.39 -0.01 1.79 16 39 H 0.03 1.49 7.84 -2.39 -0.02 1.47 16 40 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -78.04 335.92 3.74 -74.30 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.32 Total: 26.30 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.51 Total: 0.12 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -3.77 Total: -106.10 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.35 Total: -40.62 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -78.04 3.74 -74.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358065390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.514 kcal (2) G-P(sol) polarization free energy of solvation -78.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds