Wall clock time and date at job start Tue Mar 31 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 H 1.08997 * 109.47677 * 304.52680 * 3 2 1 5 5 C 1.50699 * 109.47016 * 184.52275 * 3 2 1 6 6 H 1.08003 * 120.00462 * 240.00649 * 5 3 2 7 7 C 1.37879 * 119.99873 * 60.00446 * 5 3 2 8 8 N 1.31511 * 120.00085 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99937 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47597 * 59.99662 * 9 7 5 11 11 H 1.48500 * 109.47049 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47007 * 299.99646 * 9 7 5 13 13 N 1.46905 * 109.46911 * 64.53030 * 3 2 1 14 14 C 1.46898 * 110.99766 * 208.62290 * 13 3 2 15 15 C 1.50701 * 109.47194 * 184.83045 * 14 13 3 16 16 C 1.32573 * 119.99748 * 126.87760 * 15 14 13 17 17 C 1.47811 * 119.99860 * 6.94666 * 16 15 14 18 18 C 1.39554 * 120.14337 * 41.88686 * 17 16 15 19 19 C 1.37947 * 119.85647 * 179.97438 * 18 17 16 20 20 C 1.38367 * 120.14363 * 359.97438 * 19 18 17 21 21 C 1.38319 * 120.28368 * 359.72957 * 20 19 18 22 22 C 1.37997 * 120.14430 * 0.55229 * 21 20 19 23 23 N 1.48003 * 120.07616 * 179.71944 * 22 21 20 24 24 O 1.21802 * 119.99690 * 354.90382 * 23 22 21 25 25 O 1.21798 * 120.00080 * 174.62744 * 23 22 21 26 26 H 1.08995 * 109.47057 * 304.90890 * 1 2 3 27 27 H 1.09004 * 109.46934 * 64.91055 * 1 2 3 28 28 H 1.09005 * 109.46995 * 184.91161 * 1 2 3 29 29 H 1.09002 * 109.46879 * 240.00205 * 2 1 3 30 30 H 1.09005 * 109.47099 * 120.00298 * 2 1 3 31 31 H 0.97000 * 120.00452 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00383 * 84.66837 * 13 3 2 33 33 H 1.09004 * 109.47683 * 64.83204 * 14 13 3 34 34 H 1.09002 * 109.47147 * 304.83212 * 14 13 3 35 35 H 1.07994 * 119.99984 * 306.88224 * 15 14 13 36 36 H 1.07995 * 119.99891 * 186.94879 * 16 15 14 37 37 H 1.07998 * 120.07082 * 359.97438 * 18 17 16 38 38 H 1.08007 * 119.93257 * 179.97438 * 19 18 17 39 39 H 1.07998 * 119.85561 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.93285 * 180.27510 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6120 1.9793 -0.8466 5 6 3.5428 1.4440 -0.1120 6 1 4.1421 1.8906 0.6676 7 6 4.1528 0.8751 -1.2099 8 7 3.4232 0.3307 -2.1590 9 14 6.0156 0.8763 -1.3485 10 1 6.5984 0.1447 -0.1950 11 1 6.4184 0.2096 -2.6128 12 1 6.5111 2.2762 -1.3481 13 7 1.6416 2.1026 1.2504 14 6 1.4807 3.5495 1.0537 15 6 1.1891 4.2071 2.3780 16 6 1.9279 5.2289 2.7875 17 6 2.9355 5.8218 1.8830 18 6 2.6345 6.0245 0.5355 19 6 3.5791 6.5788 -0.3033 20 6 4.8226 6.9339 0.1889 21 6 5.1250 6.7412 1.5248 22 6 4.1910 6.1823 2.3731 23 7 4.5183 5.9711 3.8010 24 8 5.6422 6.2036 4.2089 25 8 3.6626 5.5695 4.5690 26 1 -0.3633 0.5881 0.8427 27 1 -0.3633 0.4358 -0.9307 28 1 -0.3633 -1.0239 0.0880 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8523 -0.0698 -2.9313 32 1 2.3025 1.9093 1.9879 33 1 0.6542 3.7332 0.3671 34 1 2.3985 3.9638 0.6366 35 1 0.3784 3.8460 2.9933 36 1 1.7936 5.6280 3.7820 37 1 1.6642 5.7482 0.1501 38 1 3.3477 6.7359 -1.3465 39 1 5.5587 7.3671 -0.4720 40 1 6.0958 7.0246 1.9040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358280654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:54 Heat of formation + Delta-G solvation = 37.288002 kcal Electronic energy + Delta-G solvation = -23205.093915 eV Core-core repulsion = 19795.440451 eV Total energy + Delta-G solvation = -3409.653464 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07705 -39.59078 -36.80265 -36.39577 -34.71763 -32.35899 -31.94874 -31.06453 -29.67577 -26.94393 -26.24314 -24.71137 -22.94307 -22.44030 -22.06610 -20.03751 -19.41468 -18.58272 -18.20567 -17.40953 -16.85248 -16.14228 -15.70830 -15.04946 -14.82340 -14.75270 -13.98833 -13.74977 -13.34133 -12.98787 -12.84734 -12.50561 -12.31542 -12.12947 -11.75176 -11.40634 -11.34550 -11.23669 -11.11398 -11.01562 -10.93307 -10.74347 -10.58295 -10.21097 -9.93234 -9.67386 -9.54818 -9.50638 -9.09733 -8.54316 -8.45556 -7.33351 -6.08325 -4.21210 -0.10437 0.79868 1.45023 1.55304 2.30118 3.20623 3.26490 3.30080 3.35319 4.31781 4.35460 4.38144 4.66335 4.85001 4.93764 5.08416 5.16401 5.24509 5.47000 5.49982 5.66313 5.84640 5.91289 6.02888 6.08416 6.23746 6.33143 6.35525 6.47661 6.58789 6.64276 6.67104 6.76042 7.04275 7.12883 7.37198 7.50894 7.69843 7.80790 8.01071 8.03856 8.23491 8.55041 8.90567 9.46592 10.91930 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.005703 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.280135 B = 4908.188563 C = 5809.142375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.546 4.546 6 H 0.050 0.950 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.684 5.684 14 C 0.070 3.930 15 C -0.092 4.092 16 C -0.165 4.165 17 C 0.030 3.970 18 C -0.106 4.106 19 C -0.064 4.064 20 C -0.125 4.125 21 C -0.058 4.058 22 C -0.048 4.048 23 N 0.038 4.962 24 O -0.179 6.179 25 O -0.155 6.155 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.025 0.975 29 H 0.090 0.910 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.330 0.670 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 13.043 3.513 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.585 4.585 6 H 0.068 0.932 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.314 5.314 14 C -0.059 4.059 15 C -0.110 4.110 16 C -0.184 4.184 17 C 0.029 3.971 18 C -0.124 4.124 19 C -0.082 4.082 20 C -0.144 4.144 21 C -0.077 4.077 22 C -0.132 4.132 23 N 0.554 4.446 24 O -0.390 6.390 25 O -0.372 6.372 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.795 12.895 2.547 13.438 hybrid contribution 2.256 0.072 0.129 2.261 sum -0.539 12.967 2.676 13.251 Atomic orbital electron populations 1.21720 0.98980 0.98621 1.00299 1.21498 0.92127 0.99094 1.01745 1.19131 0.92753 0.91319 0.85891 0.95134 1.21774 0.92601 1.38415 1.05681 0.93212 1.24893 0.97843 0.94890 0.95639 1.69856 1.34949 1.37855 1.09496 0.86767 0.86168 0.78225 0.77537 1.20169 1.21059 1.20471 1.60915 1.53437 1.06159 1.10889 1.21401 1.00235 0.90925 0.93371 1.23709 0.95864 0.93778 0.97673 1.21956 0.96518 1.00764 0.99120 1.19014 0.90815 0.92915 0.94349 1.21516 1.01504 0.98406 0.90983 1.21560 0.92762 0.93198 1.00669 1.21189 0.97689 1.01499 0.93989 1.20934 0.98803 0.94836 0.93146 1.21182 0.97738 1.12897 0.81340 1.43511 1.00160 0.97625 1.03269 1.94509 1.07794 1.55370 1.81336 1.94476 1.42615 1.46859 1.53220 0.93078 0.94622 0.95569 0.89149 0.95026 0.92742 0.85388 0.90982 0.93631 0.85507 0.83640 0.83299 0.83949 0.83883 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.86 37.16 0.37 -2.42 16 2 C -0.11 -2.50 5.45 -26.73 -0.15 -2.64 16 3 C 0.22 5.18 1.99 -68.86 -0.14 5.04 16 4 H 0.03 0.80 7.80 -51.93 -0.41 0.39 16 5 C -0.55 -14.42 8.48 -34.44 -0.29 -14.71 16 6 H 0.05 1.34 7.69 -52.48 -0.40 0.94 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -24.33 11.29 55.43 0.63 -23.71 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -13.85 5.63 -109.22 -0.62 -14.47 16 14 C 0.07 1.19 4.33 -4.98 -0.02 1.17 16 15 C -0.09 -1.31 9.67 -36.21 -0.35 -1.66 16 16 C -0.16 -2.32 8.18 -37.57 -0.31 -2.62 16 17 C 0.03 0.44 5.05 -105.01 -0.53 -0.09 16 18 C -0.11 -1.34 7.34 -39.20 -0.29 -1.63 16 19 C -0.06 -0.70 10.03 -39.64 -0.40 -1.10 16 20 C -0.12 -1.34 10.04 -39.50 -0.40 -1.74 16 21 C -0.06 -0.73 9.55 -39.64 -0.38 -1.11 16 22 C -0.05 -0.72 6.87 -79.57 -0.55 -1.27 16 23 N 0.04 0.62 4.45 34.15 0.15 0.78 16 24 O -0.18 -3.02 18.46 -29.46 -0.54 -3.57 16 25 O -0.15 -2.62 15.61 -29.46 -0.46 -3.08 16 26 H 0.05 0.98 7.61 -51.93 -0.39 0.59 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 2.37 5.96 -51.93 -0.31 2.06 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.33 6.92 8.26 -39.29 -0.32 6.60 16 33 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 34 H 0.05 0.85 4.81 -51.93 -0.25 0.60 16 35 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.15 1.96 6.31 -52.49 -0.33 1.62 16 37 H 0.15 1.71 6.70 -52.49 -0.35 1.36 16 38 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.15 1.63 7.62 -52.48 -0.40 1.23 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -29.00 336.19 -9.58 -38.58 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.26 Total: 7.46 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -3.52 Total: -23.00 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.16 Total: -37.40 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -1.00 Total: -6.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.00 -9.58 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358280654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.867 kcal (2) G-P(sol) polarization free energy of solvation -29.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds