Wall clock time and date at job start Tue Mar 31 2020 06:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 H 1.08997 * 109.47677 * 304.52680 * 3 2 1 5 5 C 1.50699 * 109.47016 * 184.52275 * 3 2 1 6 6 H 1.08003 * 120.00462 * 240.00649 * 5 3 2 7 7 C 1.37879 * 119.99873 * 60.00446 * 5 3 2 8 8 N 1.31511 * 120.00085 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99937 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47597 * 59.99662 * 9 7 5 11 11 H 1.48500 * 109.47049 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47007 * 299.99646 * 9 7 5 13 13 N 1.46905 * 109.46911 * 64.53030 * 3 2 1 14 14 C 1.46898 * 110.99766 * 208.62290 * 13 3 2 15 15 C 1.50701 * 109.47194 * 184.83045 * 14 13 3 16 16 C 1.32573 * 119.99748 * 126.87760 * 15 14 13 17 17 C 1.47811 * 119.99860 * 6.94666 * 16 15 14 18 18 C 1.39554 * 120.14337 * 41.88686 * 17 16 15 19 19 C 1.37947 * 119.85647 * 179.97438 * 18 17 16 20 20 C 1.38367 * 120.14363 * 359.97438 * 19 18 17 21 21 C 1.38319 * 120.28368 * 359.72957 * 20 19 18 22 22 C 1.37997 * 120.14430 * 0.55229 * 21 20 19 23 23 N 1.48003 * 120.07616 * 179.71944 * 22 21 20 24 24 O 1.21802 * 119.99690 * 354.90382 * 23 22 21 25 25 O 1.21798 * 120.00080 * 174.62744 * 23 22 21 26 26 H 1.08995 * 109.47057 * 304.90890 * 1 2 3 27 27 H 1.09004 * 109.46934 * 64.91055 * 1 2 3 28 28 H 1.09005 * 109.46995 * 184.91161 * 1 2 3 29 29 H 1.09002 * 109.46879 * 240.00205 * 2 1 3 30 30 H 1.09005 * 109.47099 * 120.00298 * 2 1 3 31 31 H 0.97000 * 120.00452 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00383 * 84.66837 * 13 3 2 33 33 H 1.09004 * 109.47683 * 64.83204 * 14 13 3 34 34 H 1.09002 * 109.47147 * 304.83212 * 14 13 3 35 35 H 1.07994 * 119.99984 * 306.88224 * 15 14 13 36 36 H 1.07995 * 119.99891 * 186.94879 * 16 15 14 37 37 H 1.07998 * 120.07082 * 359.97438 * 18 17 16 38 38 H 1.08007 * 119.93257 * 179.97438 * 19 18 17 39 39 H 1.07998 * 119.85561 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.93285 * 180.27510 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6120 1.9793 -0.8466 5 6 3.5428 1.4440 -0.1120 6 1 4.1421 1.8906 0.6676 7 6 4.1528 0.8751 -1.2099 8 7 3.4232 0.3307 -2.1590 9 14 6.0156 0.8763 -1.3485 10 1 6.5984 0.1447 -0.1950 11 1 6.4184 0.2096 -2.6128 12 1 6.5111 2.2762 -1.3481 13 7 1.6416 2.1026 1.2504 14 6 1.4807 3.5495 1.0537 15 6 1.1891 4.2071 2.3780 16 6 1.9279 5.2289 2.7875 17 6 2.9355 5.8218 1.8830 18 6 2.6345 6.0245 0.5355 19 6 3.5791 6.5788 -0.3033 20 6 4.8226 6.9339 0.1889 21 6 5.1250 6.7412 1.5248 22 6 4.1910 6.1823 2.3731 23 7 4.5183 5.9711 3.8010 24 8 5.6422 6.2036 4.2089 25 8 3.6626 5.5695 4.5690 26 1 -0.3633 0.5881 0.8427 27 1 -0.3633 0.4358 -0.9307 28 1 -0.3633 -1.0239 0.0880 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8523 -0.0698 -2.9313 32 1 2.3025 1.9093 1.9879 33 1 0.6542 3.7332 0.3671 34 1 2.3985 3.9638 0.6366 35 1 0.3784 3.8460 2.9933 36 1 1.7936 5.6280 3.7820 37 1 1.6642 5.7482 0.1501 38 1 3.3477 6.7359 -1.3465 39 1 5.5587 7.3671 -0.4720 40 1 6.0958 7.0246 1.9040 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358280654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:54 Heat of formation + Delta-G solvation = 22.399542 kcal Electronic energy + Delta-G solvation = -23205.739527 eV Core-core repulsion = 19795.440451 eV Total energy + Delta-G solvation = -3410.299076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.29358 -40.62120 -38.30274 -37.73941 -36.12132 -34.07957 -33.13226 -32.58134 -30.86642 -28.63920 -27.48784 -26.19451 -24.50845 -23.56693 -23.35604 -21.53035 -20.90132 -19.81917 -19.34804 -18.74989 -18.63980 -17.28850 -16.91388 -16.68619 -16.03120 -15.93234 -15.54218 -15.14721 -14.90232 -14.36322 -13.99825 -13.91317 -13.75019 -13.36053 -13.13047 -13.11125 -12.91241 -12.80135 -12.60923 -12.49766 -12.35071 -12.30682 -12.08220 -11.82304 -11.53757 -11.36491 -11.11247 -10.82569 -10.53759 -10.48647 -9.63197 -9.02577 -8.09921 -6.31241 -1.24995 -0.17489 0.31839 0.41443 1.20736 1.31813 1.35556 1.41552 2.34971 2.37446 3.10105 3.34825 3.40022 3.71977 3.77399 3.94585 4.04051 4.12250 4.19116 4.47203 4.56944 4.66492 4.73708 4.77988 4.79443 4.93937 4.95128 5.03826 5.13696 5.14467 5.20881 5.42642 5.46531 5.50257 5.55082 5.58273 5.66803 5.76596 6.06608 6.16922 6.34498 6.53429 6.74976 6.95043 7.39690 8.86445 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.005703 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.280135 B = 4908.188563 C = 5809.142375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.225 3.775 4 H 0.007 0.993 5 C -0.557 4.557 6 H 0.038 0.962 7 C 0.029 3.971 8 N -0.905 5.905 9 Si 0.938 3.062 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.272 1.272 13 N -0.678 5.678 14 C 0.074 3.926 15 C -0.095 4.095 16 C -0.156 4.156 17 C 0.008 3.992 18 C -0.115 4.115 19 C -0.060 4.060 20 C -0.117 4.117 21 C -0.065 4.065 22 C -0.072 4.072 23 N 0.037 4.963 24 O -0.194 6.194 25 O -0.173 6.173 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.325 0.675 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 14.015 2.687 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.117 3.883 4 H 0.025 0.975 5 C -0.596 4.596 6 H 0.057 0.943 7 C -0.172 4.172 8 N -0.543 5.543 9 Si 0.765 3.235 10 H -0.206 1.206 11 H -0.204 1.204 12 H -0.198 1.198 13 N -0.306 5.306 14 C -0.055 4.055 15 C -0.113 4.113 16 C -0.174 4.174 17 C 0.007 3.993 18 C -0.134 4.134 19 C -0.077 4.077 20 C -0.135 4.135 21 C -0.084 4.084 22 C -0.155 4.155 23 N 0.550 4.450 24 O -0.404 6.404 25 O -0.387 6.387 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.161 0.839 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.192 0.808 39 H 0.198 0.802 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.610 13.877 1.750 14.228 hybrid contribution 2.211 -0.161 0.311 2.239 sum -0.399 13.716 2.061 13.876 Atomic orbital electron populations 1.21577 0.96191 1.00018 1.00596 1.21381 0.94614 0.98424 0.99864 1.18897 0.91294 0.91583 0.86560 0.97458 1.22010 0.94019 1.38225 1.05385 0.94349 1.25515 1.01429 0.94739 0.95504 1.69964 1.36267 1.38298 1.09812 0.85927 0.81855 0.78378 0.77389 1.20585 1.20406 1.19769 1.60840 1.52585 1.08200 1.09022 1.21389 0.99958 0.88985 0.95158 1.23546 0.96962 0.94081 0.96691 1.22049 0.95882 1.00331 0.99164 1.19211 0.90876 0.93940 0.95271 1.21749 1.02485 0.98631 0.90493 1.22036 0.92332 0.91423 1.01956 1.21674 0.98266 1.00079 0.93462 1.21290 0.98952 0.94380 0.93786 1.21461 0.98903 1.14780 0.80399 1.43806 0.99902 0.97214 1.04093 1.94482 1.08083 1.55897 1.81894 1.94450 1.42622 1.47538 1.54057 0.92114 0.94767 0.93748 0.92019 0.95801 0.92710 0.85926 0.90326 0.94845 0.83881 0.83234 0.82527 0.80834 0.80207 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 9.86 71.98 0.71 -4.21 16 2 C -0.10 -4.90 5.45 30.60 0.17 -4.73 16 3 C 0.23 10.80 1.99 44.17 0.09 10.88 16 4 H 0.01 0.39 7.80 -2.39 -0.02 0.37 16 5 C -0.56 -29.57 8.48 25.60 0.22 -29.35 16 6 H 0.04 2.08 7.69 -2.91 -0.02 2.06 16 7 C 0.03 1.55 5.29 84.66 0.45 2.00 16 8 N -0.90 -49.96 11.29 21.45 0.24 -49.72 16 9 Si 0.94 42.61 29.54 68.60 2.03 44.63 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 N -0.68 -27.19 5.63 -499.45 -2.81 -30.00 16 14 C 0.07 2.47 4.33 85.56 0.37 2.84 16 15 C -0.09 -2.62 9.67 24.53 0.24 -2.38 16 16 C -0.16 -4.29 8.18 23.65 0.19 -4.10 16 17 C 0.01 0.24 5.05 -20.12 -0.10 0.14 16 18 C -0.12 -2.74 7.34 22.52 0.17 -2.58 16 19 C -0.06 -1.14 10.03 22.23 0.22 -0.92 16 20 C -0.12 -2.14 10.04 22.32 0.22 -1.91 16 21 C -0.07 -1.53 9.55 22.23 0.21 -1.32 16 22 C -0.07 -2.11 6.87 36.63 0.25 -1.86 16 23 N 0.04 1.25 4.45 -45.87 -0.20 1.04 16 24 O -0.19 -6.62 18.46 18.88 0.35 -6.27 16 25 O -0.17 -5.90 15.61 18.89 0.29 -5.60 16 26 H 0.06 2.23 7.61 -2.39 -0.02 2.21 16 27 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 3.27 5.96 -2.39 -0.01 3.26 16 30 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.33 13.62 8.26 -89.70 -0.74 12.88 16 33 H 0.08 2.51 8.09 -2.38 -0.02 2.49 16 34 H 0.03 1.23 4.81 -2.39 -0.01 1.21 16 35 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.15 3.98 6.31 -2.91 -0.02 3.97 16 37 H 0.16 3.38 6.70 -2.91 -0.02 3.36 16 38 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.16 3.28 7.62 -2.91 -0.02 3.26 16 Total: -1.00 -62.37 336.19 3.62 -58.76 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.32 Total: 24.66 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 3.40 Total: -37.51 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.78 Total: -78.68 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.64 Total: -11.87 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -62.37 3.62 -58.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358280654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.157 kcal (2) G-P(sol) polarization free energy of solvation -62.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds