Wall clock time and date at job start Tue Mar 31 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99767 * 2 1 4 4 N 1.46499 * 109.46952 * 126.05508 * 3 2 1 5 5 C 1.46497 * 119.99943 * 276.98573 * 4 3 2 6 6 C 1.50703 * 109.47073 * 269.99936 * 5 4 3 7 7 H 1.08004 * 119.99944 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99917 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00119 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99772 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47061 * 90.00329 * 10 8 6 12 12 H 1.48497 * 109.47365 * 210.00360 * 10 8 6 13 13 H 1.48501 * 109.47352 * 330.00260 * 10 8 6 14 14 C 1.34773 * 120.00113 * 96.98587 * 4 3 2 15 15 O 1.21512 * 120.00441 * 185.41401 * 14 4 3 16 16 C 1.48162 * 119.99951 * 5.41285 * 14 4 3 17 17 C 1.39616 * 120.89403 * 312.58795 * 16 14 4 18 18 C 1.38850 * 118.95127 * 180.23188 * 17 16 14 19 19 O 1.35688 * 119.62451 * 179.74586 * 18 17 16 20 20 N 1.32203 * 120.75351 * 359.49175 * 18 17 16 21 21 C 1.31883 * 121.97158 * 0.50370 * 20 18 17 22 22 C 1.50703 * 119.51039 * 179.74577 * 21 20 18 23 23 C 1.52999 * 109.47308 * 305.01857 * 22 21 20 24 24 C 1.38017 * 120.97580 * 359.76256 * 21 20 18 25 25 H 1.08002 * 120.00123 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00253 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00123 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47050 * 6.05531 * 3 2 1 29 29 H 1.08994 * 109.46724 * 246.05389 * 3 2 1 30 30 H 1.09004 * 109.47480 * 29.99852 * 5 4 3 31 31 H 1.08997 * 109.47170 * 150.00491 * 5 4 3 32 32 H 0.97008 * 119.99943 * 179.97438 * 9 8 6 33 33 H 1.07998 * 120.52102 * 359.95211 * 17 16 14 34 34 H 0.96701 * 113.99481 * 89.99299 * 19 18 17 35 35 H 1.08999 * 109.46857 * 65.02017 * 22 21 20 36 36 H 1.08997 * 109.46913 * 185.01996 * 22 21 20 37 37 H 1.09002 * 109.46578 * 300.00036 * 23 22 21 38 38 H 1.09001 * 109.47221 * 59.99745 * 23 22 21 39 39 H 1.08991 * 109.47249 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.43663 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0116 1.3216 1.1167 5 6 2.5575 1.6977 2.4577 6 6 2.7059 3.1863 2.6392 7 1 3.0989 3.7918 1.8358 8 6 2.3391 3.7755 3.8306 9 7 1.8602 3.0384 4.8087 10 14 2.5225 5.6209 4.0553 11 1 1.2742 6.2987 3.6223 12 1 2.7785 5.9223 5.4867 13 1 3.6607 6.1087 3.2357 14 6 4.3017 0.9907 0.9102 15 8 5.0660 0.9086 1.8513 16 6 4.7880 0.7271 -0.4643 17 6 4.0767 -0.1072 -1.3287 18 6 4.5719 -0.3302 -2.6065 19 8 3.8943 -1.1427 -3.4561 20 7 5.6935 0.2440 -3.0066 21 6 6.3915 1.0378 -2.2180 22 6 7.6658 1.6588 -2.7296 23 6 8.6017 0.5592 -3.2356 24 6 5.9724 1.3079 -0.9311 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3601 2.1307 0.1084 29 1 2.6063 1.4112 -0.9392 30 1 1.5104 1.4197 2.5781 31 1 3.1593 1.1789 3.2039 32 1 1.6025 3.4529 5.6471 33 1 3.1581 -0.5752 -1.0069 34 1 3.2400 -0.6842 -4.0009 35 1 7.4343 2.3430 -3.5458 36 1 8.1522 2.2069 -1.9227 37 1 8.8331 -0.1250 -2.4193 38 1 8.1153 0.0110 -4.0424 39 1 9.5235 1.0083 -3.6052 40 1 6.5511 1.9590 -0.2925 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359409001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:26 Heat of formation + Delta-G solvation = -15.540374 kcal Electronic energy + Delta-G solvation = -23038.989578 eV Core-core repulsion = 19627.045304 eV Total energy + Delta-G solvation = -3411.944274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84876 -38.96680 -37.33743 -35.91470 -34.03080 -33.26860 -32.32238 -31.96961 -29.53687 -27.75873 -25.93543 -24.79510 -23.99365 -22.73278 -21.67248 -20.25082 -19.19162 -18.11795 -16.94444 -16.69850 -16.54593 -15.97705 -15.64720 -15.22561 -14.73317 -14.58090 -14.27190 -14.13478 -14.09208 -13.19765 -13.17592 -12.74929 -12.28955 -12.16997 -12.06032 -11.90268 -11.76276 -11.51130 -11.34686 -11.18732 -11.14031 -10.93688 -10.67677 -10.27850 -9.92737 -9.74613 -9.68263 -9.28220 -9.05311 -8.82303 -8.50212 -7.86043 -6.11334 -4.16955 0.90255 0.92823 2.33791 3.05981 3.25549 3.32630 3.35448 3.44893 3.64334 3.82724 4.37484 4.41804 4.64713 4.92577 4.95939 5.06528 5.15002 5.16688 5.21482 5.23673 5.30306 5.46021 5.50556 5.66710 5.72198 5.77911 5.92507 5.97058 6.08132 6.13599 6.15540 6.39787 6.69761 6.79655 6.96452 7.33085 7.36129 7.40261 7.83145 7.83961 8.13436 8.19028 8.71882 8.90121 9.48306 10.96838 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.004854 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.018879 B = 5767.306048 C = 6993.912248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.176 4.176 3 C 0.128 3.872 4 N -0.580 5.580 5 C 0.246 3.754 6 C -0.532 4.532 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.547 3.453 15 O -0.524 6.524 16 C -0.049 4.049 17 C -0.174 4.174 18 C 0.308 3.692 19 O -0.480 6.480 20 N -0.494 5.494 21 C 0.150 3.850 22 C -0.072 4.072 23 C -0.144 4.144 24 C -0.134 4.134 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.155 0.845 34 H 0.398 0.602 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -4.446 -16.767 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C 0.004 3.996 4 N -0.310 5.310 5 C 0.127 3.873 6 C -0.570 4.570 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.332 3.668 15 O -0.401 6.401 16 C -0.060 4.060 17 C -0.196 4.196 18 C 0.129 3.871 19 O -0.287 6.287 20 N -0.214 5.214 21 C 0.012 3.988 22 C -0.110 4.110 23 C -0.202 4.202 24 C -0.155 4.155 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.172 0.828 34 H 0.256 0.744 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.886 -5.095 -16.622 17.814 hybrid contribution -0.755 1.370 0.815 1.763 sum 3.131 -3.726 -15.807 16.539 Atomic orbital electron populations 1.23854 0.95700 1.01996 0.99407 1.23398 0.96464 0.98720 1.00955 1.20792 0.92885 0.95648 0.90263 1.48178 1.06654 1.64359 1.11830 1.19374 0.95655 0.95741 0.76484 1.21403 1.43347 0.92372 0.99906 0.92376 1.24924 0.94934 0.98540 0.95528 1.69931 1.42844 1.35584 1.04694 0.86487 0.78426 0.84964 0.77502 1.20581 1.21008 1.19854 1.18090 0.83072 0.78578 0.87016 1.90783 1.55029 1.51672 1.42628 1.20595 0.94607 0.95840 0.94956 1.22735 1.02254 1.00239 0.94333 1.18928 0.89491 0.90396 0.88303 1.84802 1.54764 1.33711 1.55384 1.66710 1.07225 1.08590 1.38917 1.20906 0.95538 0.92735 0.89610 1.20515 0.90801 0.98032 1.01654 1.21676 0.98465 0.98300 1.01709 1.22082 0.95979 1.01073 0.96342 0.88111 0.88490 0.87411 0.89320 0.90299 0.94493 0.93504 0.92599 0.82791 0.74438 0.89798 0.89826 0.92784 0.91625 0.92287 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 14.32 29.01 0.42 -1.69 16 2 C -0.18 -2.42 8.53 -36.02 -0.31 -2.73 16 3 C 0.13 2.04 5.35 -5.19 -0.03 2.01 16 4 N -0.58 -12.08 2.44 -177.44 -0.43 -12.51 16 5 C 0.25 6.29 5.21 -5.19 -0.03 6.26 16 6 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 7 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 10 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.55 11.52 7.31 -12.19 -0.09 11.43 16 15 O -0.52 -13.21 16.59 5.36 0.09 -13.12 16 16 C -0.05 -0.82 5.02 -104.67 -0.53 -1.34 16 17 C -0.17 -2.47 7.51 -38.84 -0.29 -2.77 16 18 C 0.31 4.14 7.74 -17.17 -0.13 4.01 16 19 O -0.48 -5.35 13.56 -18.77 -0.25 -5.61 16 20 N -0.49 -6.90 9.87 -9.59 -0.09 -6.99 16 21 C 0.15 1.99 6.18 -82.65 -0.51 1.48 16 22 C -0.07 -0.73 6.33 -27.88 -0.18 -0.90 16 23 C -0.14 -1.37 9.77 37.16 0.36 -1.01 16 24 C -0.13 -2.02 9.42 -39.03 -0.37 -2.39 16 25 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 26 H 0.10 1.02 8.06 -52.48 -0.42 0.60 16 27 H 0.11 1.42 6.55 -52.49 -0.34 1.08 16 28 H 0.09 1.45 7.78 -51.93 -0.40 1.05 16 29 H 0.08 1.10 5.25 -51.93 -0.27 0.83 16 30 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 31 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.15 2.02 4.12 -52.49 -0.22 1.80 16 34 H 0.40 2.38 9.06 45.56 0.41 2.80 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.73 7.86 -51.93 -0.41 0.33 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.68 7.94 -51.93 -0.41 0.27 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.15 2.13 7.94 -52.48 -0.42 1.71 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -33.62 342.51 -6.42 -40.05 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.51 Total: 2.91 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.10 Total: -0.96 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.21 Total: -44.77 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.17 Total: -18.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.62 -6.42 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359409001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.505 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds