Wall clock time and date at job start Tue Mar 31 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99767 * 2 1 4 4 N 1.46499 * 109.46952 * 126.05508 * 3 2 1 5 5 C 1.46497 * 119.99943 * 276.98573 * 4 3 2 6 6 C 1.50703 * 109.47073 * 269.99936 * 5 4 3 7 7 H 1.08004 * 119.99944 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99917 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00119 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99772 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47061 * 90.00329 * 10 8 6 12 12 H 1.48497 * 109.47365 * 210.00360 * 10 8 6 13 13 H 1.48501 * 109.47352 * 330.00260 * 10 8 6 14 14 C 1.34773 * 120.00113 * 96.98587 * 4 3 2 15 15 O 1.21512 * 120.00441 * 185.41401 * 14 4 3 16 16 C 1.48162 * 119.99951 * 5.41285 * 14 4 3 17 17 C 1.39616 * 120.89403 * 312.58795 * 16 14 4 18 18 C 1.38850 * 118.95127 * 180.23188 * 17 16 14 19 19 O 1.35688 * 119.62451 * 179.74586 * 18 17 16 20 20 N 1.32203 * 120.75351 * 359.49175 * 18 17 16 21 21 C 1.31883 * 121.97158 * 0.50370 * 20 18 17 22 22 C 1.50703 * 119.51039 * 179.74577 * 21 20 18 23 23 C 1.52999 * 109.47308 * 305.01857 * 22 21 20 24 24 C 1.38017 * 120.97580 * 359.76256 * 21 20 18 25 25 H 1.08002 * 120.00123 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00253 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00123 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47050 * 6.05531 * 3 2 1 29 29 H 1.08994 * 109.46724 * 246.05389 * 3 2 1 30 30 H 1.09004 * 109.47480 * 29.99852 * 5 4 3 31 31 H 1.08997 * 109.47170 * 150.00491 * 5 4 3 32 32 H 0.97008 * 119.99943 * 179.97438 * 9 8 6 33 33 H 1.07998 * 120.52102 * 359.95211 * 17 16 14 34 34 H 0.96701 * 113.99481 * 89.99299 * 19 18 17 35 35 H 1.08999 * 109.46857 * 65.02017 * 22 21 20 36 36 H 1.08997 * 109.46913 * 185.01996 * 22 21 20 37 37 H 1.09002 * 109.46578 * 300.00036 * 23 22 21 38 38 H 1.09001 * 109.47221 * 59.99745 * 23 22 21 39 39 H 1.08991 * 109.47249 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.43663 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0116 1.3216 1.1167 5 6 2.5575 1.6977 2.4577 6 6 2.7059 3.1863 2.6392 7 1 3.0989 3.7918 1.8358 8 6 2.3391 3.7755 3.8306 9 7 1.8602 3.0384 4.8087 10 14 2.5225 5.6209 4.0553 11 1 1.2742 6.2987 3.6223 12 1 2.7785 5.9223 5.4867 13 1 3.6607 6.1087 3.2357 14 6 4.3017 0.9907 0.9102 15 8 5.0660 0.9086 1.8513 16 6 4.7880 0.7271 -0.4643 17 6 4.0767 -0.1072 -1.3287 18 6 4.5719 -0.3302 -2.6065 19 8 3.8943 -1.1427 -3.4561 20 7 5.6935 0.2440 -3.0066 21 6 6.3915 1.0378 -2.2180 22 6 7.6658 1.6588 -2.7296 23 6 8.6017 0.5592 -3.2356 24 6 5.9724 1.3079 -0.9311 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3601 2.1307 0.1084 29 1 2.6063 1.4112 -0.9392 30 1 1.5104 1.4197 2.5781 31 1 3.1593 1.1789 3.2039 32 1 1.6025 3.4529 5.6471 33 1 3.1581 -0.5752 -1.0069 34 1 3.2400 -0.6842 -4.0009 35 1 7.4343 2.3430 -3.5458 36 1 8.1522 2.2069 -1.9227 37 1 8.8331 -0.1250 -2.4193 38 1 8.1153 0.0110 -4.0424 39 1 9.5235 1.0083 -3.6052 40 1 6.5511 1.9590 -0.2925 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359409001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:26 Heat of formation + Delta-G solvation = -40.287621 kcal Electronic energy + Delta-G solvation = -23040.062699 eV Core-core repulsion = 19627.045304 eV Total energy + Delta-G solvation = -3413.017395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.05784 -40.47077 -38.30038 -37.46320 -35.40396 -34.74686 -33.79392 -33.25510 -30.58506 -29.63526 -27.26589 -26.25220 -25.24689 -24.13603 -22.90866 -21.43987 -20.35964 -19.41068 -18.65913 -18.16887 -17.94329 -17.38791 -16.96117 -16.57050 -16.03967 -16.01730 -15.82241 -15.27535 -14.96307 -14.51150 -14.45826 -14.28377 -14.04708 -13.40308 -13.24790 -13.14384 -12.97431 -12.89552 -12.77958 -12.58682 -12.35236 -12.27632 -12.24649 -11.93706 -11.72851 -11.32665 -10.95352 -10.65978 -10.43525 -10.37399 -9.88183 -9.62947 -8.25216 -6.40299 -0.32026 -0.14301 1.24673 1.36772 1.39592 1.49275 1.59303 2.11906 2.38243 2.49888 2.56445 3.05316 3.28091 3.46730 3.83024 3.84382 3.99417 4.10367 4.15326 4.22390 4.35602 4.40976 4.45978 4.67386 4.76275 4.81497 4.89300 5.00217 5.02778 5.07649 5.16981 5.20255 5.31208 5.41806 5.47571 5.65612 5.69872 5.86114 6.00434 6.49739 6.56944 6.67686 6.80324 7.09447 7.31887 8.82563 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015771 B = 0.004854 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.018879 B = 5767.306048 C = 6993.912248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.196 4.196 3 C 0.127 3.873 4 N -0.583 5.583 5 C 0.263 3.737 6 C -0.547 4.547 7 H 0.055 0.945 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.968 3.032 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.272 1.272 14 C 0.543 3.457 15 O -0.580 6.580 16 C -0.063 4.063 17 C -0.171 4.171 18 C 0.319 3.681 19 O -0.480 6.480 20 N -0.499 5.499 21 C 0.158 3.842 22 C -0.073 4.073 23 C -0.140 4.140 24 C -0.146 4.146 25 H 0.103 0.897 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.029 0.971 31 H 0.001 0.999 32 H 0.268 0.732 33 H 0.165 0.835 34 H 0.423 0.577 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -3.857 -19.267 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.214 4.214 3 C 0.005 3.995 4 N -0.311 5.311 5 C 0.142 3.858 6 C -0.586 4.586 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.792 3.208 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.196 1.196 14 C 0.331 3.669 15 O -0.461 6.461 16 C -0.074 4.074 17 C -0.192 4.192 18 C 0.140 3.860 19 O -0.291 6.291 20 N -0.219 5.219 21 C 0.020 3.980 22 C -0.111 4.111 23 C -0.198 4.198 24 C -0.167 4.167 25 H 0.121 0.879 26 H 0.139 0.861 27 H 0.132 0.868 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.047 0.953 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.182 0.818 34 H 0.285 0.715 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.545 -4.510 -19.191 20.030 hybrid contribution -0.720 1.110 1.517 2.013 sum 2.825 -3.400 -17.674 18.219 Atomic orbital electron populations 1.24103 0.95171 1.03292 0.96445 1.23246 0.96957 0.97668 1.03578 1.21016 0.92239 0.96965 0.89281 1.48138 1.07756 1.63820 1.11429 1.18817 0.94143 0.94535 0.78275 1.21661 1.43448 0.93274 1.00191 0.92674 1.25831 0.94335 1.03532 0.95076 1.70050 1.43538 1.37695 1.05221 0.85409 0.78954 0.78986 0.77440 1.18780 1.20646 1.19628 1.18738 0.82495 0.77296 0.88418 1.90735 1.56356 1.54151 1.44871 1.20217 0.96071 0.98198 0.92932 1.22743 1.02390 0.99758 0.94294 1.18953 0.89305 0.89522 0.88228 1.84757 1.55346 1.33665 1.55294 1.66871 1.07412 1.08766 1.38896 1.21339 0.96157 0.91877 0.88580 1.20672 0.89347 0.98390 1.02650 1.21652 0.99213 0.97927 1.00977 1.22173 0.95606 1.01560 0.97351 0.87853 0.86109 0.86802 0.89907 0.88158 0.95282 0.98055 0.92291 0.81798 0.71523 0.88062 0.88558 0.93828 0.92518 0.89988 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 14.32 67.78 0.97 -2.46 16 2 C -0.20 -5.17 8.53 25.65 0.22 -4.95 16 3 C 0.13 4.02 5.35 85.63 0.46 4.48 16 4 N -0.58 -25.13 2.44 -833.59 -2.04 -27.17 16 5 C 0.26 14.12 5.21 85.63 0.45 14.56 16 6 C -0.55 -31.09 9.39 25.60 0.24 -30.85 16 7 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.67 5.46 84.66 0.46 1.13 16 9 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 10 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 11 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 C 0.54 23.85 7.31 86.88 0.63 24.49 16 15 O -0.58 -31.09 16.59 -3.75 -0.06 -31.16 16 16 C -0.06 -2.13 5.02 -19.90 -0.10 -2.23 16 17 C -0.17 -4.65 7.51 22.75 0.17 -4.48 16 18 C 0.32 7.89 7.74 84.78 0.66 8.55 16 19 O -0.48 -9.25 13.56 -90.07 -1.22 -10.47 16 20 N -0.50 -12.87 9.87 -297.15 -2.93 -15.80 16 21 C 0.16 3.96 6.18 42.50 0.26 4.23 16 22 C -0.07 -1.30 6.33 29.85 0.19 -1.12 16 23 C -0.14 -2.36 9.77 71.98 0.70 -1.66 16 24 C -0.15 -4.39 9.42 22.63 0.21 -4.18 16 25 H 0.10 2.28 7.84 -2.91 -0.02 2.26 16 26 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 27 H 0.11 2.88 6.55 -2.91 -0.02 2.86 16 28 H 0.08 2.70 7.78 -2.39 -0.02 2.68 16 29 H 0.10 2.72 5.25 -2.39 -0.01 2.70 16 30 H 0.03 1.58 8.07 -2.38 -0.02 1.56 16 31 H 0.00 0.08 7.35 -2.39 -0.02 0.07 16 32 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 33 H 0.16 4.08 4.12 -2.91 -0.01 4.07 16 34 H 0.42 3.55 9.06 -74.06 -0.67 2.88 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.49 7.86 -2.39 -0.02 1.47 16 37 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 1.06 7.94 -2.39 -0.02 1.04 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.14 4.28 7.94 -2.91 -0.02 4.26 16 Total: -1.00 -75.21 342.51 1.98 -73.23 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.39 Total: 14.75 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 5.53 Total: 5.51 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -4.69 Total: -97.91 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.28 Total: -41.63 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -75.21 1.98 -73.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359409001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.946 kcal (2) G-P(sol) polarization free energy of solvation -75.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds