Wall clock time and date at job start Tue Mar 31 2020 06:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99987 * 2 1 4 4 N 1.46494 * 109.47357 * 124.99756 * 3 2 1 5 5 C 1.46494 * 120.00184 * 270.00144 * 4 3 2 6 6 C 1.50706 * 109.47073 * 269.99784 * 5 4 3 7 7 H 1.08001 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00062 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99969 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47291 * 60.00194 * 10 8 6 12 12 H 1.48501 * 109.47208 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47348 * 299.99930 * 10 8 6 14 14 C 1.34781 * 119.99911 * 89.99896 * 4 3 2 15 15 O 1.21287 * 120.00106 * 180.02562 * 14 4 3 16 16 C 1.50697 * 120.00308 * 0.02562 * 14 4 3 17 17 O 1.42897 * 109.47453 * 180.02562 * 16 14 4 18 18 C 1.42907 * 113.99983 * 180.02562 * 17 16 14 19 19 C 1.50695 * 109.47073 * 179.97438 * 18 17 16 20 20 C 1.38678 * 120.41675 * 270.25149 * 19 18 17 21 21 C 1.38627 * 118.41930 * 180.24221 * 20 19 18 22 22 C 1.38232 * 119.16085 * 359.75178 * 21 20 19 23 23 N 1.31857 * 120.76541 * 359.97438 * 22 21 20 24 24 C 1.31889 * 121.72235 * 0.02562 * 23 22 21 25 25 H 1.08004 * 120.00264 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00047 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00264 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47174 * 4.99716 * 3 2 1 29 29 H 1.09008 * 109.47215 * 245.00124 * 3 2 1 30 30 H 1.08992 * 109.47161 * 29.99623 * 5 4 3 31 31 H 1.08996 * 109.47445 * 149.99860 * 5 4 3 32 32 H 0.96998 * 119.99633 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47457 * 59.99327 * 16 14 4 34 34 H 1.09005 * 109.46638 * 300.00296 * 16 14 4 35 35 H 1.09001 * 109.46869 * 59.99626 * 18 17 16 36 36 H 1.08996 * 109.46730 * 299.99473 * 18 17 16 37 37 H 1.07994 * 120.78944 * 359.96926 * 20 19 18 38 38 H 1.07997 * 120.42083 * 179.72800 * 21 20 19 39 39 H 1.07999 * 119.61954 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.61237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3040 3.8370 1.6366 8 6 2.5183 4.0669 3.6081 9 7 1.9589 3.4661 4.6356 10 14 2.8727 5.8996 3.6771 11 1 2.1379 6.5875 2.5852 12 1 2.4318 6.4401 4.9881 13 1 4.3308 6.1284 3.5132 14 6 4.2496 0.8662 0.9824 15 8 5.0197 0.8881 1.9192 16 6 4.6973 0.3184 -0.3482 17 8 6.0572 -0.1101 -0.2538 18 6 6.5825 -0.6489 -1.4687 19 6 8.0149 -1.0656 -1.2554 20 6 9.0479 -0.1671 -1.4766 21 6 10.3503 -0.5959 -1.2725 22 6 10.5742 -1.8939 -0.8532 23 7 9.5668 -2.7194 -0.6474 24 6 8.3154 -2.3459 -0.8314 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4027 -0.9315 30 1 1.4887 1.6968 2.5458 31 1 3.0988 1.3605 3.2259 32 1 1.7300 3.9749 5.4291 33 1 4.6126 1.0952 -1.1081 34 1 4.0681 -0.5284 -0.6226 35 1 6.5375 0.1084 -2.2514 36 1 5.9923 -1.5153 -1.7670 37 1 8.8428 0.8412 -1.8045 38 1 11.1796 0.0756 -1.4393 39 1 11.5859 -2.2356 -0.6914 40 1 7.5165 -3.0504 -0.6530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359436843.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:42 Heat of formation + Delta-G solvation = -17.145508 kcal Electronic energy + Delta-G solvation = -22147.047698 eV Core-core repulsion = 18735.033820 eV Total energy + Delta-G solvation = -3412.013878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.34585 -39.25452 -37.42629 -35.63332 -33.26557 -33.02774 -32.10030 -31.91179 -28.95531 -27.12353 -25.96836 -25.28208 -23.74522 -22.58108 -22.17492 -20.03564 -18.60476 -17.37517 -16.92204 -16.79519 -16.46369 -16.42152 -15.65007 -15.31308 -15.22733 -14.61463 -14.30168 -14.07845 -13.87652 -13.66426 -13.23376 -13.04860 -12.76477 -12.41632 -12.11984 -11.84001 -11.71840 -11.48028 -11.27924 -11.07809 -10.92064 -10.59074 -10.19220 -10.01358 -9.79924 -9.66581 -9.58199 -9.27941 -9.23931 -8.86511 -8.43186 -7.72867 -6.04298 -4.09323 0.85120 1.10401 2.39043 3.24666 3.31514 3.35100 3.36624 3.41293 3.75302 4.19413 4.35200 4.45836 4.58378 4.69134 4.78288 4.82894 5.01159 5.07279 5.14828 5.22651 5.24826 5.30062 5.35068 5.40376 5.44755 5.57987 5.60881 5.91069 5.96393 6.06714 6.13508 6.49206 6.74130 6.83359 6.93823 7.15263 7.43818 7.52513 7.78005 7.91905 8.22408 8.35001 8.89035 9.05971 9.55588 11.03848 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.003581 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.353181 B = 7816.433679 C = 9068.031368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.171 4.171 3 C 0.135 3.865 4 N -0.593 5.593 5 C 0.249 3.751 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.506 3.494 15 O -0.517 6.517 16 C 0.044 3.956 17 O -0.355 6.355 18 C 0.104 3.896 19 C -0.138 4.138 20 C -0.052 4.052 21 C -0.177 4.177 22 C 0.100 3.900 23 N -0.489 5.489 24 C 0.121 3.879 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.156 0.844 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.944 -9.069 -17.236 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C 0.011 3.989 4 N -0.326 5.326 5 C 0.131 3.869 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.291 3.709 15 O -0.392 6.392 16 C -0.036 4.036 17 O -0.273 6.273 18 C 0.026 3.974 19 C -0.140 4.140 20 C -0.079 4.079 21 C -0.196 4.196 22 C -0.057 4.057 23 N -0.197 5.197 24 C -0.036 4.036 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.588 -9.850 -16.058 20.309 hybrid contribution -0.275 1.919 -0.428 1.985 sum 7.313 -7.931 -16.486 19.702 Atomic orbital electron populations 1.23830 0.95826 1.01834 1.00246 1.23430 0.96475 0.98963 1.00201 1.20615 0.93261 0.95546 0.89519 1.48186 1.09996 1.60593 1.13822 1.19284 0.95417 0.93733 0.78502 1.21399 1.40699 0.93309 1.01359 0.92482 1.24933 0.95022 0.98795 0.95301 1.69926 1.41906 1.36286 1.05167 0.86556 0.78853 0.84836 0.77158 1.20247 1.21153 1.20166 1.19914 0.82691 0.79334 0.88994 1.90714 1.52243 1.54853 1.41429 1.22415 0.84068 0.99378 0.97750 1.88130 1.25729 1.81413 1.32039 1.21240 0.90308 0.98036 0.87787 1.20608 0.95370 0.95601 1.02403 1.21559 0.92247 0.99278 0.94769 1.22155 0.97651 0.97849 1.01994 1.22820 0.98427 0.90201 0.94209 1.67737 0.99999 1.37217 1.14732 1.22712 0.93845 0.94172 0.92833 0.88216 0.88730 0.87788 0.89188 0.90974 0.94776 0.93829 0.92633 0.90776 0.90832 0.92107 0.91950 0.84590 0.84594 0.82716 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 14.32 29.02 0.42 -1.79 16 2 C -0.17 -2.31 9.74 -36.02 -0.35 -2.66 16 3 C 0.13 2.08 5.65 -5.20 -0.03 2.05 16 4 N -0.59 -12.43 2.44 -176.44 -0.43 -12.86 16 5 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 6 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 10 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.51 10.76 7.75 -10.98 -0.09 10.67 16 15 O -0.52 -13.83 16.08 -14.36 -0.23 -14.06 16 16 C 0.04 0.66 4.97 36.00 0.18 0.83 16 17 O -0.35 -5.73 9.86 -55.14 -0.54 -6.27 16 18 C 0.10 1.14 6.09 36.00 0.22 1.36 16 19 C -0.14 -1.61 5.53 -104.48 -0.58 -2.19 16 20 C -0.05 -0.56 9.86 -39.28 -0.39 -0.94 16 21 C -0.18 -1.66 10.11 -39.44 -0.40 -2.06 16 22 C 0.10 1.03 11.18 -17.54 -0.20 0.83 16 23 N -0.49 -6.14 10.36 -13.25 -0.14 -6.27 16 24 C 0.12 1.46 10.86 -17.55 -0.19 1.26 16 25 H 0.10 1.21 7.84 -52.48 -0.41 0.80 16 26 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.10 1.30 7.83 -52.48 -0.41 0.89 16 28 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 29 H 0.07 0.89 6.44 -51.92 -0.33 0.55 16 30 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.07 0.92 7.40 -51.93 -0.38 0.53 16 34 H 0.07 0.88 7.78 -51.93 -0.40 0.47 16 35 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 37 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -36.20 352.06 -7.82 -44.02 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.65 Total: -1.00 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.85 Total: 0.22 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.17 Total: -45.09 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.77 Total: -20.34 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.20 -7.82 -44.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359436843.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.879 kcal (2) G-P(sol) polarization free energy of solvation -36.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds