Wall clock time and date at job start Tue Mar 31 2020 06:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99987 * 2 1 4 4 N 1.46494 * 109.47357 * 124.99756 * 3 2 1 5 5 C 1.46494 * 120.00184 * 270.00144 * 4 3 2 6 6 C 1.50706 * 109.47073 * 269.99784 * 5 4 3 7 7 H 1.08001 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00062 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99969 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47291 * 60.00194 * 10 8 6 12 12 H 1.48501 * 109.47208 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47348 * 299.99930 * 10 8 6 14 14 C 1.34781 * 119.99911 * 89.99896 * 4 3 2 15 15 O 1.21287 * 120.00106 * 180.02562 * 14 4 3 16 16 C 1.50697 * 120.00308 * 0.02562 * 14 4 3 17 17 O 1.42897 * 109.47453 * 180.02562 * 16 14 4 18 18 C 1.42907 * 113.99983 * 180.02562 * 17 16 14 19 19 C 1.50695 * 109.47073 * 179.97438 * 18 17 16 20 20 C 1.38678 * 120.41675 * 270.25149 * 19 18 17 21 21 C 1.38627 * 118.41930 * 180.24221 * 20 19 18 22 22 C 1.38232 * 119.16085 * 359.75178 * 21 20 19 23 23 N 1.31857 * 120.76541 * 359.97438 * 22 21 20 24 24 C 1.31889 * 121.72235 * 0.02562 * 23 22 21 25 25 H 1.08004 * 120.00264 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00047 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00264 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47174 * 4.99716 * 3 2 1 29 29 H 1.09008 * 109.47215 * 245.00124 * 3 2 1 30 30 H 1.08992 * 109.47161 * 29.99623 * 5 4 3 31 31 H 1.08996 * 109.47445 * 149.99860 * 5 4 3 32 32 H 0.96998 * 119.99633 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47457 * 59.99327 * 16 14 4 34 34 H 1.09005 * 109.46638 * 300.00296 * 16 14 4 35 35 H 1.09001 * 109.46869 * 59.99626 * 18 17 16 36 36 H 1.08996 * 109.46730 * 299.99473 * 18 17 16 37 37 H 1.07994 * 120.78944 * 359.96926 * 20 19 18 38 38 H 1.07997 * 120.42083 * 179.72800 * 21 20 19 39 39 H 1.07999 * 119.61954 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.61237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3040 3.8370 1.6366 8 6 2.5183 4.0669 3.6081 9 7 1.9589 3.4661 4.6356 10 14 2.8727 5.8996 3.6771 11 1 2.1379 6.5875 2.5852 12 1 2.4318 6.4401 4.9881 13 1 4.3308 6.1284 3.5132 14 6 4.2496 0.8662 0.9824 15 8 5.0197 0.8881 1.9192 16 6 4.6973 0.3184 -0.3482 17 8 6.0572 -0.1101 -0.2538 18 6 6.5825 -0.6489 -1.4687 19 6 8.0149 -1.0656 -1.2554 20 6 9.0479 -0.1671 -1.4766 21 6 10.3503 -0.5959 -1.2725 22 6 10.5742 -1.8939 -0.8532 23 7 9.5668 -2.7194 -0.6474 24 6 8.3154 -2.3459 -0.8314 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4027 -0.9315 30 1 1.4887 1.6968 2.5458 31 1 3.0988 1.3605 3.2259 32 1 1.7300 3.9749 5.4291 33 1 4.6126 1.0952 -1.1081 34 1 4.0681 -0.5284 -0.6226 35 1 6.5375 0.1084 -2.2514 36 1 5.9923 -1.5153 -1.7670 37 1 8.8428 0.8412 -1.8045 38 1 11.1796 0.0756 -1.4393 39 1 11.5859 -2.2356 -0.6914 40 1 7.5165 -3.0504 -0.6530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359436843.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:42 Heat of formation + Delta-G solvation = -40.892272 kcal Electronic energy + Delta-G solvation = -22148.077435 eV Core-core repulsion = 18735.033820 eV Total energy + Delta-G solvation = -3413.043615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17415 -40.77295 -38.57747 -37.18231 -35.12827 -33.91922 -33.67107 -32.70674 -30.57506 -28.55525 -27.01164 -26.76688 -24.53897 -24.50881 -22.97557 -21.21100 -20.08521 -18.67787 -18.31084 -17.93837 -17.76375 -17.65098 -16.85195 -16.79222 -16.34805 -16.00444 -15.77100 -15.35203 -14.79259 -14.71932 -14.33211 -14.25828 -14.06280 -13.97668 -13.37076 -13.29921 -13.02965 -12.96999 -12.83121 -12.58620 -12.31910 -12.22442 -12.18722 -11.69634 -10.84242 -10.76362 -10.64771 -10.58789 -10.41298 -10.29742 -10.03835 -9.49984 -8.22759 -6.37806 0.05156 0.31298 1.32423 1.36499 1.41243 1.48295 1.76213 2.09121 2.38594 2.76452 3.07024 3.19091 3.53508 3.66692 3.87834 3.92225 4.03503 4.06141 4.07812 4.15473 4.26556 4.31983 4.43743 4.48096 4.50955 4.70911 4.84044 4.86330 4.98797 5.07572 5.15508 5.21571 5.29230 5.50146 5.73195 5.74135 5.75528 5.95036 6.05049 6.09234 6.68801 6.74719 6.98020 7.27301 7.45032 8.84520 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.003581 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.353181 B = 7816.433679 C = 9068.031368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.186 4.186 3 C 0.130 3.870 4 N -0.595 5.595 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.968 3.032 11 H -0.257 1.257 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.492 3.508 15 O -0.589 6.589 16 C 0.059 3.941 17 O -0.395 6.395 18 C 0.102 3.898 19 C -0.154 4.154 20 C -0.065 4.065 21 C -0.174 4.174 22 C 0.089 3.911 23 N -0.518 5.518 24 C 0.102 3.898 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.025 0.975 31 H -0.008 1.008 32 H 0.267 0.733 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.181 0.819 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -8.410 -19.938 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.205 4.205 3 C 0.008 3.992 4 N -0.327 5.327 5 C 0.144 3.856 6 C -0.584 4.584 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.792 3.208 11 H -0.181 1.181 12 H -0.204 1.204 13 H -0.205 1.205 14 C 0.281 3.719 15 O -0.469 6.469 16 C -0.020 4.020 17 O -0.315 6.315 18 C 0.025 3.975 19 C -0.156 4.156 20 C -0.091 4.091 21 C -0.194 4.194 22 C -0.067 4.067 23 N -0.227 5.227 24 C -0.054 4.054 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.043 0.957 31 H 0.010 0.990 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.170 0.830 38 H 0.184 0.816 39 H 0.198 0.802 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.571 -9.206 -18.832 22.287 hybrid contribution -0.271 1.660 0.402 1.729 sum 7.300 -7.546 -18.430 21.211 Atomic orbital electron populations 1.24057 0.95626 1.02863 0.98147 1.23351 0.96819 0.98320 1.02006 1.20924 0.92828 0.96534 0.88896 1.48164 1.11286 1.59855 1.13408 1.18688 0.93883 0.92700 0.80312 1.21706 1.40684 0.94392 1.01598 0.92576 1.25886 0.94615 1.03912 0.94813 1.70056 1.42767 1.38255 1.05782 0.85460 0.78456 0.78866 0.77988 1.18102 1.20401 1.20458 1.21149 0.81778 0.78119 0.90857 1.90670 1.54125 1.57738 1.44369 1.22328 0.84495 1.01501 0.93634 1.88078 1.26150 1.82115 1.35138 1.21495 0.89927 0.99589 0.86440 1.20811 0.96261 0.95686 1.02878 1.21918 0.92643 0.99924 0.94642 1.22510 0.98255 0.97926 1.00687 1.23344 0.99129 0.90576 0.93696 1.67733 1.00692 1.38452 1.15781 1.22947 0.94133 0.94931 0.93415 0.88343 0.86612 0.86510 0.90232 0.86944 0.95738 0.98960 0.92401 0.87289 0.87035 0.89586 0.89480 0.83029 0.81640 0.80203 0.81893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 14.32 67.79 0.97 -2.81 16 2 C -0.19 -4.59 9.74 25.65 0.25 -4.34 16 3 C 0.13 3.79 5.65 85.63 0.48 4.28 16 4 N -0.60 -25.13 2.44 -830.51 -2.03 -27.16 16 5 C 0.27 14.54 5.16 85.64 0.44 14.98 16 6 C -0.55 -31.71 9.39 25.60 0.24 -31.47 16 7 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.39 5.46 84.65 0.46 0.85 16 9 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 10 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 11 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 14 C 0.49 21.09 7.75 87.66 0.68 21.77 16 15 O -0.59 -32.98 16.08 15.99 0.26 -32.72 16 16 C 0.06 1.63 4.97 71.23 0.35 1.98 16 17 O -0.40 -12.19 9.86 -129.94 -1.28 -13.47 16 18 C 0.10 1.99 6.09 71.23 0.43 2.42 16 19 C -0.15 -3.42 5.53 -19.77 -0.11 -3.53 16 20 C -0.07 -1.28 9.86 22.47 0.22 -1.06 16 21 C -0.17 -2.98 10.11 22.36 0.23 -2.75 16 22 C 0.09 1.73 11.18 84.69 0.95 2.67 16 23 N -0.52 -12.86 10.36 -195.83 -2.03 -14.89 16 24 C 0.10 2.42 10.86 84.67 0.92 3.34 16 25 H 0.10 2.21 7.84 -2.91 -0.02 2.19 16 26 H 0.12 2.10 8.06 -2.91 -0.02 2.08 16 27 H 0.12 2.60 7.83 -2.91 -0.02 2.57 16 28 H 0.08 2.48 7.72 -2.39 -0.02 2.46 16 29 H 0.11 2.35 6.44 -2.38 -0.02 2.33 16 30 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 31 H -0.01 -0.50 7.42 -2.39 -0.02 -0.51 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.11 2.23 7.40 -2.39 -0.02 2.21 16 34 H 0.11 2.21 7.78 -2.38 -0.02 2.19 16 35 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.09 1.23 8.09 -2.39 -0.02 1.22 16 37 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 38 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -84.12 352.06 4.77 -79.35 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.02 Total: 12.08 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 6.52 Total: 6.33 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -3.77 Total: -98.72 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -1.02 Total: -46.19 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -84.12 4.77 -79.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359436843.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.453 kcal (2) G-P(sol) polarization free energy of solvation -84.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds