Wall clock time and date at job start Tue Mar 31 2020 06:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46798 * 2 1 4 4 H 1.08995 * 109.47123 * 55.00930 * 3 2 1 5 5 C 1.50701 * 109.46492 * 175.00117 * 3 2 1 6 6 H 1.08002 * 120.00009 * 120.00637 * 5 3 2 7 7 C 1.37880 * 120.00570 * 300.00081 * 5 3 2 8 8 N 1.31518 * 119.99253 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00345 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47265 * 89.99896 * 9 7 5 11 11 H 1.48498 * 109.47299 * 210.00292 * 9 7 5 12 12 H 1.48510 * 109.47051 * 329.99980 * 9 7 5 13 13 N 1.46496 * 109.47395 * 295.00120 * 3 2 1 14 14 C 1.34779 * 119.99953 * 85.00437 * 13 3 2 15 15 O 1.21549 * 119.99783 * 359.97438 * 14 13 3 16 16 C 1.47927 * 120.00059 * 179.97438 * 14 13 3 17 17 C 1.39466 * 119.71567 * 180.02562 * 16 14 13 18 18 C 1.38414 * 119.06675 * 180.02562 * 17 16 14 19 19 C 1.38692 * 118.72248 * 359.82978 * 18 17 16 20 20 C 1.39546 * 119.04358 * 0.20059 * 19 18 17 21 21 N 1.31301 * 120.84587 * 359.88945 * 20 19 18 22 22 O 1.35531 * 121.72317 * 180.24512 * 19 18 17 23 23 C 1.42888 * 117.74798 * 342.71821 * 22 19 18 24 24 C 1.53392 * 108.68163 * 49.17677 * 23 22 19 25 25 C 1.50498 * 119.62315 * 179.63967 * 18 17 16 26 26 H 1.08998 * 109.47078 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46871 * 299.99782 * 1 2 3 28 28 H 1.08999 * 109.47304 * 59.99351 * 1 2 3 29 29 H 1.08994 * 109.46546 * 240.00314 * 2 1 3 30 30 H 1.08997 * 109.46869 * 120.00351 * 2 1 3 31 31 H 0.97002 * 119.99008 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99880 * 265.00214 * 13 3 2 33 33 H 1.08004 * 120.46729 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.57725 * 179.87507 * 20 19 18 35 35 H 1.09002 * 109.62851 * 168.98501 * 23 22 19 36 36 H 1.09005 * 109.62981 * 289.37159 * 23 22 19 37 37 H 1.09007 * 109.68973 * 55.12822 * 24 23 22 38 38 H 1.09000 * 109.69281 * 175.70127 * 24 23 22 39 39 H 1.08989 * 109.45891 * 282.62519 * 25 18 17 40 40 H 1.09000 * 109.45668 * 42.59701 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0050 0.8811 1.3816 10 1 6.4418 2.1139 2.0847 11 1 6.4397 -0.3100 2.1546 12 1 6.6136 0.8415 0.0275 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3413 2.6319 -0.4321 16 6 0.0439 3.3264 -2.6306 17 6 -1.2170 3.9116 -2.7430 18 6 -1.5693 4.5269 -3.9318 19 6 -0.6515 4.5429 -4.9715 20 6 0.5916 3.9363 -4.7871 21 7 0.8966 3.3586 -3.6482 22 8 -0.9307 5.1324 -6.1595 23 6 -2.3004 5.4057 -6.4609 24 6 -2.9350 6.1184 -5.2600 25 6 -2.9298 5.1553 -4.0695 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8295 -0.0613 2.9497 32 1 2.2719 2.1232 -1.9977 33 1 -1.9092 3.8844 -1.9143 34 1 1.3121 3.9419 -5.5917 35 1 -2.3609 6.0463 -7.3408 36 1 -2.8270 4.4706 -6.6519 37 1 -2.3550 7.0075 -5.0120 38 1 -3.9593 6.4030 -5.5009 39 1 -3.6745 4.3765 -4.2335 40 1 -3.1711 5.7023 -3.1581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368358745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:12 Heat of formation + Delta-G solvation = -51.775815 kcal Electronic energy + Delta-G solvation = -22904.966987 eV Core-core repulsion = 19491.451426 eV Total energy + Delta-G solvation = -3413.515561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22725 -39.29995 -37.90629 -35.07861 -34.82920 -32.45873 -31.79636 -31.10062 -30.31781 -27.08377 -26.30963 -24.88033 -23.41782 -22.92263 -21.62362 -19.93141 -19.24107 -17.99550 -17.91481 -17.10060 -16.13183 -15.61757 -15.39896 -15.04708 -14.75423 -14.63977 -14.26090 -14.18469 -13.74106 -13.58650 -13.39243 -12.75275 -12.64094 -12.46767 -12.00298 -11.73740 -11.45349 -11.25582 -11.20967 -11.03259 -10.91792 -10.79770 -10.28437 -10.13058 -9.81208 -9.58486 -9.54885 -9.06931 -8.99455 -8.48210 -8.44592 -7.74421 -6.07301 -4.15862 0.82215 1.11905 2.88943 3.20983 3.29325 3.35654 3.38591 3.94281 4.15320 4.21788 4.25962 4.33767 4.39109 4.50551 4.63951 4.82508 4.99492 5.08280 5.14480 5.24145 5.34528 5.39053 5.51194 5.61858 5.74369 5.88571 6.06103 6.28719 6.43484 6.50586 6.70147 7.03090 7.09879 7.23228 7.40778 7.48816 7.66618 7.75557 7.87438 7.97974 8.22502 8.74757 8.82358 9.16511 9.51026 10.98213 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029440 B = 0.003553 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.865079 B = 7878.303055 C = 8463.559073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.268 3.732 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.683 5.683 14 C 0.556 3.444 15 O -0.546 6.546 16 C 0.057 3.943 17 C -0.079 4.079 18 C -0.131 4.131 19 C 0.090 3.910 20 C 0.080 3.920 21 N -0.424 5.424 22 O -0.307 6.307 23 C 0.058 3.942 24 C -0.160 4.160 25 C -0.080 4.080 26 H 0.023 0.977 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.100 0.900 31 H 0.264 0.736 32 H 0.399 0.601 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.145 9.349 -16.385 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.068 0.932 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.330 5.330 14 C 0.339 3.661 15 O -0.425 6.425 16 C -0.080 4.080 17 C -0.100 4.100 18 C -0.140 4.140 19 C 0.042 3.958 20 C -0.083 4.083 21 N -0.136 5.136 22 O -0.219 6.219 23 C -0.017 4.017 24 C -0.198 4.198 25 C -0.117 4.117 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.168 0.832 34 H 0.185 0.815 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.712 8.855 -15.511 21.358 hybrid contribution 0.223 0.397 -0.302 0.547 sum -11.489 9.252 -15.814 21.625 Atomic orbital electron populations 1.21846 0.98413 0.98058 1.01179 1.21937 0.92582 0.99706 1.02405 1.18865 0.94389 0.89269 0.80854 0.93158 1.21253 0.90666 1.38826 1.06297 0.91927 1.24881 0.98624 0.94805 0.95381 1.69903 1.35087 1.37775 1.09348 0.86443 0.84871 0.77561 0.78215 1.20604 1.21124 1.19778 1.46403 1.14151 1.53728 1.18719 1.17666 0.83467 0.79560 0.85387 1.90751 1.51916 1.60862 1.39004 1.21551 0.91572 1.00279 0.94609 1.21899 0.96656 0.94295 0.97149 1.20058 0.97709 1.02408 0.93805 1.19984 0.95724 0.94538 0.85525 1.22415 0.94030 0.95883 0.95949 1.67624 1.33169 1.13663 0.99131 1.85957 1.28092 1.74669 1.33223 1.23036 0.80095 1.00441 0.98115 1.22252 1.02772 0.99301 0.95432 1.20469 0.92866 0.98605 0.99741 0.95813 0.93087 0.94387 0.94909 0.88157 0.92623 0.76676 0.83220 0.81519 0.87225 0.91550 0.90227 0.89336 0.89755 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 6.95 2.24 -69.08 -0.15 6.80 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.02 11.29 55.43 0.63 -24.39 16 9 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.68 -15.38 5.01 -55.86 -0.28 -15.66 16 14 C 0.56 11.91 6.37 -12.29 -0.08 11.83 16 15 O -0.55 -12.92 13.45 5.32 0.07 -12.85 16 16 C 0.06 1.02 6.75 -83.02 -0.56 0.46 16 17 C -0.08 -1.17 9.30 -39.06 -0.36 -1.54 16 18 C -0.13 -1.59 5.75 -104.49 -0.60 -2.19 16 19 C 0.09 1.11 6.50 -38.93 -0.25 0.86 16 20 C 0.08 1.07 11.12 -17.29 -0.19 0.88 16 21 N -0.42 -6.96 9.52 -9.61 -0.09 -7.05 16 22 O -0.31 -3.21 10.30 -18.29 -0.19 -3.40 16 23 C 0.06 0.39 7.01 37.36 0.26 0.66 16 24 C -0.16 -1.01 6.21 -26.46 -0.16 -1.17 16 25 C -0.08 -0.66 5.89 -27.91 -0.16 -0.83 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 28 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.40 8.41 7.86 -40.82 -0.32 8.09 16 33 H 0.15 2.14 7.64 -52.48 -0.40 1.74 16 34 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.61 8.14 -51.94 -0.42 0.18 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -31.08 327.32 -7.92 -39.00 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.47 Total: 6.89 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.49 Total: -3.46 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.25 Total: -47.11 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.12 Total: -16.25 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.08 -7.92 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368358745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.779 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds