Wall clock time and date at job start Tue Mar 31 2020 06:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46798 * 2 1 4 4 H 1.08995 * 109.47123 * 55.00930 * 3 2 1 5 5 C 1.50701 * 109.46492 * 175.00117 * 3 2 1 6 6 H 1.08002 * 120.00009 * 120.00637 * 5 3 2 7 7 C 1.37880 * 120.00570 * 300.00081 * 5 3 2 8 8 N 1.31518 * 119.99253 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00345 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47265 * 89.99896 * 9 7 5 11 11 H 1.48498 * 109.47299 * 210.00292 * 9 7 5 12 12 H 1.48510 * 109.47051 * 329.99980 * 9 7 5 13 13 N 1.46496 * 109.47395 * 295.00120 * 3 2 1 14 14 C 1.34779 * 119.99953 * 85.00437 * 13 3 2 15 15 O 1.21549 * 119.99783 * 359.97438 * 14 13 3 16 16 C 1.47927 * 120.00059 * 179.97438 * 14 13 3 17 17 C 1.39466 * 119.71567 * 180.02562 * 16 14 13 18 18 C 1.38414 * 119.06675 * 180.02562 * 17 16 14 19 19 C 1.38692 * 118.72248 * 359.82978 * 18 17 16 20 20 C 1.39546 * 119.04358 * 0.20059 * 19 18 17 21 21 N 1.31301 * 120.84587 * 359.88945 * 20 19 18 22 22 O 1.35531 * 121.72317 * 180.24512 * 19 18 17 23 23 C 1.42888 * 117.74798 * 342.71821 * 22 19 18 24 24 C 1.53392 * 108.68163 * 49.17677 * 23 22 19 25 25 C 1.50498 * 119.62315 * 179.63967 * 18 17 16 26 26 H 1.08998 * 109.47078 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46871 * 299.99782 * 1 2 3 28 28 H 1.08999 * 109.47304 * 59.99351 * 1 2 3 29 29 H 1.08994 * 109.46546 * 240.00314 * 2 1 3 30 30 H 1.08997 * 109.46869 * 120.00351 * 2 1 3 31 31 H 0.97002 * 119.99008 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99880 * 265.00214 * 13 3 2 33 33 H 1.08004 * 120.46729 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.57725 * 179.87507 * 20 19 18 35 35 H 1.09002 * 109.62851 * 168.98501 * 23 22 19 36 36 H 1.09005 * 109.62981 * 289.37159 * 23 22 19 37 37 H 1.09007 * 109.68973 * 55.12822 * 24 23 22 38 38 H 1.09000 * 109.69281 * 175.70127 * 24 23 22 39 39 H 1.08989 * 109.45891 * 282.62519 * 25 18 17 40 40 H 1.09000 * 109.45668 * 42.59701 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0050 0.8811 1.3816 10 1 6.4418 2.1139 2.0847 11 1 6.4397 -0.3100 2.1546 12 1 6.6136 0.8415 0.0275 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3413 2.6319 -0.4321 16 6 0.0439 3.3264 -2.6306 17 6 -1.2170 3.9116 -2.7430 18 6 -1.5693 4.5269 -3.9318 19 6 -0.6515 4.5429 -4.9715 20 6 0.5916 3.9363 -4.7871 21 7 0.8966 3.3586 -3.6482 22 8 -0.9307 5.1324 -6.1595 23 6 -2.3004 5.4057 -6.4609 24 6 -2.9350 6.1184 -5.2600 25 6 -2.9298 5.1553 -4.0695 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8295 -0.0613 2.9497 32 1 2.2719 2.1232 -1.9977 33 1 -1.9092 3.8844 -1.9143 34 1 1.3121 3.9419 -5.5917 35 1 -2.3609 6.0463 -7.3408 36 1 -2.8270 4.4706 -6.6519 37 1 -2.3550 7.0075 -5.0120 38 1 -3.9593 6.4030 -5.5009 39 1 -3.6745 4.3765 -4.2335 40 1 -3.1711 5.7023 -3.1581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368358745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:12 Heat of formation + Delta-G solvation = -72.567963 kcal Electronic energy + Delta-G solvation = -22905.868602 eV Core-core repulsion = 19491.451426 eV Total energy + Delta-G solvation = -3414.417176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.22277 -40.73029 -39.15526 -36.96036 -35.67060 -34.32266 -33.10126 -32.51113 -31.66351 -29.00571 -27.09731 -26.08019 -24.92291 -24.30149 -22.91940 -21.48735 -20.82793 -19.37502 -18.84314 -18.36616 -17.68888 -17.06960 -16.70104 -16.48343 -16.23128 -15.77876 -15.61067 -15.08932 -14.95156 -14.80822 -14.59242 -14.36181 -13.92686 -13.74628 -13.53786 -13.23316 -13.16306 -12.89272 -12.68982 -12.46892 -12.17783 -12.07178 -11.86954 -11.69938 -11.60295 -11.14961 -11.05274 -10.61407 -10.56281 -10.51320 -9.73775 -9.42315 -8.16336 -6.33446 -0.35423 0.08403 1.44825 1.45338 1.56520 1.78519 2.12571 2.33759 2.54793 2.81346 3.12744 3.24299 3.43405 3.56511 3.66789 3.89638 4.00748 4.10821 4.28098 4.48440 4.51864 4.55348 4.55880 4.67133 4.71141 4.74960 4.90197 4.96176 5.03016 5.07356 5.16724 5.24057 5.27895 5.42483 5.53734 5.60483 5.78048 5.89603 6.15079 6.17059 6.65724 6.72656 6.99854 7.30847 7.48851 8.89264 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029440 B = 0.003553 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.865079 B = 7878.303055 C = 8463.559073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.276 3.724 4 H 0.004 0.996 5 C -0.551 4.551 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.263 1.263 13 N -0.687 5.687 14 C 0.555 3.445 15 O -0.578 6.578 16 C 0.024 3.976 17 C -0.079 4.079 18 C -0.128 4.128 19 C 0.107 3.893 20 C 0.074 3.926 21 N -0.443 5.443 22 O -0.310 6.310 23 C 0.047 3.953 24 C -0.154 4.154 25 C -0.083 4.083 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.266 0.734 32 H 0.406 0.594 33 H 0.148 0.852 34 H 0.193 0.807 35 H 0.140 0.860 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 10.486 -19.169 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.187 1.187 13 N -0.334 5.334 14 C 0.341 3.659 15 O -0.459 6.459 16 C -0.112 4.112 17 C -0.100 4.100 18 C -0.137 4.137 19 C 0.057 3.943 20 C -0.090 4.090 21 N -0.155 5.155 22 O -0.222 6.222 23 C -0.027 4.027 24 C -0.191 4.191 25 C -0.120 4.120 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.241 0.759 33 H 0.166 0.834 34 H 0.210 0.790 35 H 0.157 0.843 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.138 0.862 39 H 0.118 0.882 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.442 10.007 -18.326 24.305 hybrid contribution 0.322 0.159 0.405 0.541 sum -12.120 10.165 -17.920 23.903 Atomic orbital electron populations 1.21679 0.96844 0.99323 1.00229 1.21786 0.93918 0.98890 1.01355 1.18484 0.93873 0.89374 0.80951 0.97857 1.21553 0.91364 1.39200 1.06818 0.91529 1.25755 1.03445 0.94199 0.94869 1.70041 1.37061 1.38208 1.09796 0.85356 0.78949 0.77568 0.78538 1.20316 1.20581 1.18714 1.46196 1.15082 1.54370 1.17747 1.18209 0.82447 0.78692 0.86581 1.90712 1.52568 1.61931 1.40670 1.20960 0.93354 1.03152 0.93710 1.21926 0.95476 0.94269 0.98347 1.20415 0.99520 1.01331 0.92394 1.20004 0.95082 0.92935 0.86233 1.22835 0.95292 0.95411 0.95437 1.67493 1.33488 1.14773 0.99796 1.85971 1.30782 1.73669 1.31821 1.23474 0.78124 1.01751 0.99375 1.22269 1.04586 0.98222 0.94050 1.20642 0.90637 0.99457 1.01253 0.93281 0.95033 0.94277 0.94363 0.90502 0.92465 0.75916 0.83423 0.79026 0.84265 0.90466 0.90801 0.86171 0.88153 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.51 71.98 0.61 -5.19 16 2 C -0.12 -6.24 5.45 30.60 0.17 -6.07 16 3 C 0.28 15.04 2.24 44.25 0.10 15.14 16 4 H 0.00 0.22 7.58 -2.39 -0.02 0.21 16 5 C -0.55 -30.79 8.73 25.60 0.22 -30.57 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.97 5.29 84.65 0.45 1.42 16 8 N -0.91 -53.20 11.29 21.45 0.24 -52.95 16 9 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 13 N -0.69 -32.29 5.01 -448.90 -2.25 -34.54 16 14 C 0.55 24.87 6.37 86.81 0.55 25.42 16 15 O -0.58 -28.81 13.45 -3.87 -0.05 -28.86 16 16 C 0.02 0.87 6.75 41.86 0.28 1.15 16 17 C -0.08 -2.34 9.30 22.61 0.21 -2.13 16 18 C -0.13 -2.87 5.75 -19.78 -0.11 -2.98 16 19 C 0.11 2.38 6.50 22.69 0.15 2.53 16 20 C 0.07 1.87 11.12 85.09 0.95 2.82 16 21 N -0.44 -14.57 9.52 -184.33 -1.76 -16.32 16 22 O -0.31 -5.44 10.30 -88.35 -0.91 -6.35 16 23 C 0.05 0.43 7.01 72.11 0.51 0.94 16 24 C -0.15 -1.31 6.21 30.77 0.19 -1.12 16 25 C -0.08 -1.12 5.89 29.83 0.18 -0.95 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.03 1.56 7.84 -2.39 -0.02 1.54 16 28 H 0.04 1.80 5.64 -2.39 -0.01 1.79 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 4.36 5.95 -2.39 -0.01 4.34 16 31 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.41 17.73 7.86 -92.71 -0.73 17.00 16 33 H 0.15 4.32 7.64 -2.91 -0.02 4.29 16 34 H 0.19 3.72 8.06 -2.91 -0.02 3.69 16 35 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -70.29 327.32 2.08 -68.21 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.33 Total: 24.94 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 4.45 Total: 0.41 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -3.76 Total: -103.81 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.96 Total: -35.21 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -70.29 2.08 -68.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368358745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.358 kcal (2) G-P(sol) polarization free energy of solvation -70.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds