Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46989 * 2 1 4 4 N 1.46497 * 109.47506 * 120.00188 * 2 1 3 5 5 C 1.34771 * 120.00545 * 154.99992 * 4 2 1 6 6 O 1.21533 * 119.99599 * 0.02562 * 5 4 2 7 7 C 1.48033 * 120.00528 * 180.02562 * 5 4 2 8 8 C 1.39558 * 119.99845 * 0.24612 * 7 5 4 9 9 C 1.37813 * 120.00086 * 180.21501 * 8 7 5 10 10 C 1.39562 * 119.99751 * 359.51254 * 9 8 7 11 11 C 1.48039 * 119.99779 * 180.27306 * 10 9 8 12 12 O 1.21523 * 119.99780 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99844 * 180.02562 * 11 10 9 14 14 C 1.46490 * 120.00008 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47073 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00145 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99767 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99653 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00187 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47195 * 89.99935 * 19 17 15 21 21 H 1.48498 * 109.47267 * 209.99956 * 19 17 15 22 22 H 1.48499 * 109.47159 * 330.00025 * 19 17 15 23 23 C 1.39555 * 120.00187 * 0.25991 * 10 9 8 24 24 C 1.37826 * 119.99828 * 359.97438 * 23 10 9 25 25 H 1.09004 * 109.47194 * 299.99556 * 1 2 3 26 26 H 1.08997 * 109.47141 * 59.99763 * 1 2 3 27 27 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47026 * 240.00199 * 2 1 3 29 29 H 1.08999 * 109.46948 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47373 * 300.00096 * 3 2 1 31 31 H 1.09004 * 109.46790 * 60.00196 * 3 2 1 32 32 H 0.97000 * 119.99446 * 334.99986 * 4 2 1 33 33 H 1.07998 * 119.99726 * 359.97438 * 8 7 5 34 34 H 1.08002 * 120.00410 * 179.79864 * 9 8 7 35 35 H 0.97000 * 119.99732 * 0.02562 * 13 11 10 36 36 H 1.08999 * 109.47700 * 300.00371 * 14 13 11 37 37 H 1.09003 * 109.47432 * 60.00150 * 14 13 11 38 38 H 0.97003 * 119.99577 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.00375 * 180.02562 * 23 10 9 40 40 H 1.07991 * 119.99690 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2404 -1.2592 1.1943 6 8 3.9373 -1.1985 0.2005 7 6 3.7337 -1.9575 2.4028 8 6 2.9313 -2.0316 3.5422 9 6 3.3923 -2.6779 4.6688 10 6 4.6574 -3.2671 4.6667 11 6 5.1501 -3.9665 5.8748 12 8 4.4528 -4.0280 6.8681 13 7 6.3721 -4.5351 5.8729 14 6 6.8595 -5.2277 7.0682 15 6 8.2415 -5.7689 6.8067 16 1 8.7100 -5.6122 5.8464 17 6 8.9081 -6.4633 7.7939 18 7 10.1139 -6.9360 7.5655 19 14 8.0980 -6.7338 9.4552 20 1 7.3268 -8.0026 9.4292 21 1 9.1420 -6.8106 10.5085 22 1 7.1810 -5.6032 9.7488 23 6 5.4579 -3.1971 3.5257 24 6 4.9988 -2.5466 2.4007 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.4623 -0.7387 1.9894 33 1 1.9507 -1.5791 3.5425 34 1 2.7727 -2.7324 5.5517 35 1 6.9288 -4.4856 5.0801 36 1 6.8955 -4.5289 7.9039 37 1 6.1868 -6.0503 7.3112 38 1 10.5831 -7.4242 8.2602 39 1 6.4367 -3.6534 3.5239 40 1 5.6180 -2.4928 1.5176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427648816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = -57.321332 kcal Electronic energy + Delta-G solvation = -21700.907638 eV Core-core repulsion = 18287.151605 eV Total energy + Delta-G solvation = -3413.756033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58953 -39.51008 -37.82052 -36.28202 -34.49748 -32.80562 -32.29887 -31.12881 -30.73328 -28.00056 -27.65485 -25.01449 -22.86596 -22.44195 -21.46987 -20.94633 -19.97191 -18.48410 -17.74241 -16.68603 -16.34349 -15.63074 -15.34255 -15.20386 -14.74304 -14.69961 -14.50532 -14.32883 -14.00667 -13.73469 -13.38629 -13.12855 -12.77680 -12.75609 -12.58956 -12.50811 -12.35071 -12.09115 -11.80922 -11.41097 -11.23981 -11.06849 -10.81332 -10.21311 -10.01645 -9.55645 -9.51550 -9.47084 -9.21121 -9.09517 -8.82240 -8.25310 -6.24894 -4.27908 0.38460 1.19148 2.43362 2.78075 3.23850 3.28044 3.31088 3.38777 3.76313 3.92901 4.29735 4.30739 4.48506 4.56611 4.63175 4.76255 4.81261 5.02090 5.10213 5.13394 5.14901 5.23575 5.31051 5.34678 5.48462 5.50416 5.67569 5.83063 5.84670 6.01508 6.10731 6.14727 6.23456 6.60288 6.74335 6.99822 7.08978 7.15031 7.31271 7.90288 8.04441 8.40963 8.66892 8.78709 9.34175 10.86876 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042079 B = 0.002602 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.257450 B =10759.552927 C =11277.612029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 C -0.165 4.165 4 N -0.725 5.725 5 C 0.561 3.439 6 O -0.534 6.534 7 C -0.125 4.125 8 C -0.096 4.096 9 C -0.073 4.073 10 C -0.093 4.093 11 C 0.538 3.462 12 O -0.550 6.550 13 N -0.695 5.695 14 C 0.219 3.781 15 C -0.546 4.546 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.890 5.890 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.261 1.261 23 C -0.095 4.095 24 C -0.065 4.065 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.400 0.600 33 H 0.129 0.871 34 H 0.142 0.858 35 H 0.397 0.603 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.268 0.732 39 H 0.139 0.861 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.666 14.278 -13.888 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 C -0.223 4.223 4 N -0.377 5.377 5 C 0.349 3.651 6 O -0.412 6.412 7 C -0.128 4.128 8 C -0.115 4.115 9 C -0.092 4.092 10 C -0.097 4.097 11 C 0.323 3.677 12 O -0.430 6.430 13 N -0.343 5.343 14 C 0.097 3.903 15 C -0.584 4.584 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.527 5.527 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.185 1.185 23 C -0.113 4.113 24 C -0.084 4.084 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.236 0.764 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.232 0.768 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.157 0.843 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.468 14.150 -13.807 27.054 hybrid contribution -0.235 -0.235 0.919 0.977 sum -18.703 13.915 -12.888 26.637 Atomic orbital electron populations 1.22089 0.93982 1.02789 1.03050 1.20967 0.94038 0.93118 0.88729 1.22198 1.02327 0.95642 1.02138 1.46048 1.17814 1.56876 1.17008 1.18369 0.81235 0.77981 0.87494 1.90768 1.56169 1.59764 1.34468 1.20013 0.96439 1.02269 0.94095 1.21184 0.99138 0.98848 0.92300 1.21216 0.94771 0.94829 0.98376 1.20465 0.95508 0.99090 0.94630 1.18310 0.82504 0.79784 0.87113 1.90723 1.56852 1.60921 1.34554 1.46176 1.15769 1.53863 1.18471 1.19572 0.95156 0.92103 0.83448 1.21063 0.98603 1.36515 1.02210 0.90167 1.24797 0.94625 0.94442 0.98734 1.69881 1.12208 1.36195 1.34437 0.86811 0.79568 0.79736 0.83550 1.19798 1.20843 1.18489 1.21454 0.99999 0.97923 0.91961 1.21201 0.94316 0.94376 0.98485 0.91972 0.90793 0.91839 0.89262 0.91923 0.91559 0.92401 0.76439 0.85358 0.83983 0.76752 0.95365 0.95816 0.92191 0.84336 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 9.38 37.16 0.35 -0.35 16 2 C 0.14 0.94 3.18 -67.93 -0.22 0.72 16 3 C -0.16 -1.10 9.48 37.16 0.35 -0.75 16 4 N -0.72 -5.65 5.03 -54.69 -0.27 -5.93 16 5 C 0.56 6.30 7.74 -12.25 -0.09 6.21 16 6 O -0.53 -7.74 16.00 5.34 0.09 -7.65 16 7 C -0.12 -1.39 5.88 -104.90 -0.62 -2.01 16 8 C -0.10 -0.94 9.53 -39.24 -0.37 -1.31 16 9 C -0.07 -0.91 9.58 -39.24 -0.38 -1.28 16 10 C -0.09 -1.38 5.88 -104.89 -0.62 -1.99 16 11 C 0.54 10.24 7.78 -12.24 -0.10 10.15 16 12 O -0.55 -12.24 16.33 5.35 0.09 -12.16 16 13 N -0.69 -13.93 5.50 -62.38 -0.34 -14.27 16 14 C 0.22 5.30 4.50 -5.20 -0.02 5.28 16 15 C -0.55 -14.76 9.83 -34.44 -0.34 -15.10 16 16 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 19 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 23 C -0.09 -1.20 9.53 -39.24 -0.37 -1.58 16 24 C -0.06 -0.77 9.58 -39.24 -0.38 -1.15 16 25 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.77 7.58 -51.93 -0.39 0.37 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.40 2.14 6.63 -40.82 -0.27 1.87 16 33 H 0.13 0.78 6.39 -52.49 -0.34 0.45 16 34 H 0.14 1.73 7.64 -52.49 -0.40 1.33 16 35 H 0.40 6.97 6.34 -40.82 -0.26 6.71 16 36 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 37 H 0.02 0.60 7.57 -51.93 -0.39 0.20 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.14 1.59 6.39 -52.49 -0.34 1.26 16 40 H 0.14 1.60 7.64 -52.49 -0.40 1.20 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -33.63 340.74 -7.38 -41.01 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.28 Total: 3.86 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.90 Total: -1.08 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.16 Total: -45.59 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.17 Total: -19.81 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.63 -7.38 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427648816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.309 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds