Wall clock time and date at job start Tue Mar 31 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46989 * 2 1 4 4 N 1.46497 * 109.47506 * 120.00188 * 2 1 3 5 5 C 1.34771 * 120.00545 * 154.99992 * 4 2 1 6 6 O 1.21533 * 119.99599 * 0.02562 * 5 4 2 7 7 C 1.48033 * 120.00528 * 180.02562 * 5 4 2 8 8 C 1.39558 * 119.99845 * 0.24612 * 7 5 4 9 9 C 1.37813 * 120.00086 * 180.21501 * 8 7 5 10 10 C 1.39562 * 119.99751 * 359.51254 * 9 8 7 11 11 C 1.48039 * 119.99779 * 180.27306 * 10 9 8 12 12 O 1.21523 * 119.99780 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99844 * 180.02562 * 11 10 9 14 14 C 1.46490 * 120.00008 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47073 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00145 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99767 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99653 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00187 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47195 * 89.99935 * 19 17 15 21 21 H 1.48498 * 109.47267 * 209.99956 * 19 17 15 22 22 H 1.48499 * 109.47159 * 330.00025 * 19 17 15 23 23 C 1.39555 * 120.00187 * 0.25991 * 10 9 8 24 24 C 1.37826 * 119.99828 * 359.97438 * 23 10 9 25 25 H 1.09004 * 109.47194 * 299.99556 * 1 2 3 26 26 H 1.08997 * 109.47141 * 59.99763 * 1 2 3 27 27 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47026 * 240.00199 * 2 1 3 29 29 H 1.08999 * 109.46948 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47373 * 300.00096 * 3 2 1 31 31 H 1.09004 * 109.46790 * 60.00196 * 3 2 1 32 32 H 0.97000 * 119.99446 * 334.99986 * 4 2 1 33 33 H 1.07998 * 119.99726 * 359.97438 * 8 7 5 34 34 H 1.08002 * 120.00410 * 179.79864 * 9 8 7 35 35 H 0.97000 * 119.99732 * 0.02562 * 13 11 10 36 36 H 1.08999 * 109.47700 * 300.00371 * 14 13 11 37 37 H 1.09003 * 109.47432 * 60.00150 * 14 13 11 38 38 H 0.97003 * 119.99577 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.00375 * 180.02562 * 23 10 9 40 40 H 1.07991 * 119.99690 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2404 -1.2592 1.1943 6 8 3.9373 -1.1985 0.2005 7 6 3.7337 -1.9575 2.4028 8 6 2.9313 -2.0316 3.5422 9 6 3.3923 -2.6779 4.6688 10 6 4.6574 -3.2671 4.6667 11 6 5.1501 -3.9665 5.8748 12 8 4.4528 -4.0280 6.8681 13 7 6.3721 -4.5351 5.8729 14 6 6.8595 -5.2277 7.0682 15 6 8.2415 -5.7689 6.8067 16 1 8.7100 -5.6122 5.8464 17 6 8.9081 -6.4633 7.7939 18 7 10.1139 -6.9360 7.5655 19 14 8.0980 -6.7338 9.4552 20 1 7.3268 -8.0026 9.4292 21 1 9.1420 -6.8106 10.5085 22 1 7.1810 -5.6032 9.7488 23 6 5.4579 -3.1971 3.5257 24 6 4.9988 -2.5466 2.4007 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.4623 -0.7387 1.9894 33 1 1.9507 -1.5791 3.5425 34 1 2.7727 -2.7324 5.5517 35 1 6.9288 -4.4856 5.0801 36 1 6.8955 -4.5289 7.9039 37 1 6.1868 -6.0503 7.3112 38 1 10.5831 -7.4242 8.2602 39 1 6.4367 -3.6534 3.5239 40 1 5.6180 -2.4928 1.5176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427648816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:48 Heat of formation + Delta-G solvation = -81.229966 kcal Electronic energy + Delta-G solvation = -21701.944394 eV Core-core repulsion = 18287.151605 eV Total energy + Delta-G solvation = -3414.792789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56975 -40.76084 -38.97027 -37.01202 -36.29197 -34.54162 -33.45995 -32.10920 -31.68673 -29.81397 -28.08270 -26.19898 -24.20218 -23.64530 -22.55894 -21.86091 -21.25311 -19.71927 -19.00172 -18.15773 -17.48952 -17.03462 -16.40171 -16.33000 -16.17267 -15.99720 -15.53766 -15.37688 -15.03575 -14.84677 -14.59511 -14.35723 -14.18932 -13.91201 -13.62283 -13.41213 -13.16198 -13.07847 -13.03679 -12.71005 -12.29445 -12.21034 -11.93264 -11.89467 -11.67620 -11.18871 -11.01273 -10.92955 -10.36946 -10.13569 -10.12090 -9.89668 -8.40625 -6.48461 -0.64573 0.26307 1.33204 1.35586 1.37516 1.47996 2.05962 2.09731 2.26522 2.29984 2.82384 2.94923 3.50352 3.68232 3.76355 3.86078 3.97363 4.15460 4.19322 4.30279 4.34139 4.53831 4.74040 4.74882 4.77037 4.90964 4.94856 4.99353 5.01205 5.07540 5.15749 5.21291 5.27859 5.29055 5.34449 5.39585 5.49315 5.66918 6.05523 6.46487 6.51157 6.71705 7.10458 7.12534 7.25918 8.73967 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042079 B = 0.002602 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.257450 B =10759.552927 C =11277.612029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 C -0.162 4.162 4 N -0.707 5.707 5 C 0.559 3.441 6 O -0.573 6.573 7 C -0.121 4.121 8 C -0.075 4.075 9 C -0.072 4.072 10 C -0.115 4.115 11 C 0.540 3.460 12 O -0.585 6.585 13 N -0.698 5.698 14 C 0.230 3.770 15 C -0.549 4.549 16 H 0.059 0.941 17 C 0.025 3.975 18 N -0.930 5.930 19 Si 0.939 3.061 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.092 4.092 24 C -0.071 4.071 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.415 0.585 33 H 0.173 0.827 34 H 0.146 0.854 35 H 0.408 0.592 36 H 0.018 0.982 37 H 0.017 0.983 38 H 0.273 0.727 39 H 0.144 0.856 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.455 15.590 -14.055 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.027 3.973 3 C -0.220 4.220 4 N -0.360 5.360 5 C 0.347 3.653 6 O -0.453 6.453 7 C -0.124 4.124 8 C -0.093 4.093 9 C -0.091 4.091 10 C -0.118 4.118 11 C 0.328 3.672 12 O -0.468 6.468 13 N -0.347 5.347 14 C 0.107 3.893 15 C -0.587 4.587 16 H 0.077 0.923 17 C -0.175 4.175 18 N -0.569 5.569 19 Si 0.762 3.238 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.110 4.110 24 C -0.090 4.090 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.253 0.747 33 H 0.190 0.810 34 H 0.164 0.836 35 H 0.245 0.755 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.161 0.839 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.295 15.486 -13.991 29.816 hybrid contribution 0.583 -0.555 0.821 1.150 sum -20.711 14.930 -13.170 28.728 Atomic orbital electron populations 1.22048 0.91414 1.03307 1.04377 1.21099 0.95931 0.92767 0.87485 1.22170 1.00522 0.95759 1.03523 1.45995 1.16653 1.55395 1.17954 1.18399 0.81952 0.78073 0.86861 1.90760 1.57472 1.61381 1.35717 1.20186 0.96209 1.01405 0.94593 1.21489 1.00386 0.97137 0.90324 1.21350 0.93794 0.94559 0.99433 1.20167 0.97176 1.01104 0.93353 1.18886 0.81412 0.78842 0.88036 1.90690 1.57576 1.62216 1.36284 1.46015 1.16740 1.54167 1.17770 1.19188 0.93503 0.91820 0.84801 1.21267 0.99782 1.36242 1.01421 0.92290 1.25628 0.95119 0.94266 1.02486 1.69988 1.13660 1.37323 1.35902 0.85831 0.78825 0.79853 0.79246 1.18898 1.19855 1.18221 1.21447 1.00067 0.97917 0.91604 1.21275 0.95035 0.94497 0.98210 0.90466 0.89686 0.91720 0.91284 0.94645 0.90094 0.91167 0.74682 0.80975 0.83605 0.75503 0.96404 0.96497 0.91807 0.83860 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.38 71.98 0.68 -0.14 16 2 C 0.13 1.53 3.18 44.99 0.14 1.67 16 3 C -0.16 -1.85 9.48 71.98 0.68 -1.17 16 4 N -0.71 -9.08 5.03 -445.24 -2.24 -11.32 16 5 C 0.56 11.57 7.74 86.84 0.67 12.24 16 6 O -0.57 -16.32 16.00 -3.82 -0.06 -16.38 16 7 C -0.12 -2.43 5.88 -20.04 -0.12 -2.55 16 8 C -0.08 -1.22 9.53 22.49 0.21 -1.00 16 9 C -0.07 -1.65 9.58 22.49 0.22 -1.43 16 10 C -0.11 -3.28 5.88 -20.04 -0.12 -3.40 16 11 C 0.54 20.56 7.78 86.84 0.68 21.24 16 12 O -0.59 -26.02 16.33 -3.79 -0.06 -26.08 16 13 N -0.70 -28.28 5.50 -469.54 -2.58 -30.87 16 14 C 0.23 11.25 4.50 85.64 0.38 11.63 16 15 C -0.55 -30.25 9.83 25.60 0.25 -30.00 16 16 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 17 C 0.03 1.44 5.47 84.65 0.46 1.90 16 18 N -0.93 -55.45 13.96 21.45 0.30 -55.15 16 19 Si 0.94 43.66 27.47 68.60 1.88 45.54 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.26 -11.81 6.54 99.48 0.65 -11.16 16 23 C -0.09 -2.28 9.53 22.49 0.21 -2.06 16 24 C -0.07 -1.63 9.58 22.49 0.22 -1.41 16 25 H 0.08 0.21 8.14 -2.38 -0.02 0.19 16 26 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 1.12 7.58 -2.39 -0.02 1.10 16 29 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.41 2.71 6.63 -92.71 -0.61 2.10 16 33 H 0.17 1.22 6.39 -2.91 -0.02 1.20 16 34 H 0.15 3.24 7.64 -2.91 -0.02 3.21 16 35 H 0.41 14.57 6.34 -92.71 -0.59 13.99 16 36 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 37 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.14 3.30 6.39 -2.91 -0.02 3.28 16 40 H 0.14 3.20 7.64 -2.92 -0.02 3.18 16 Total: -1.00 -73.95 340.74 1.63 -72.32 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -0.18 Total: 16.41 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 4.57 Total: 5.52 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -4.52 Total: -97.33 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.12 Total: -42.46 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -73.95 1.63 -72.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427648816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.910 kcal (2) G-P(sol) polarization free energy of solvation -73.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds