Wall clock time and date at job start Tue Mar 31 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46716 * 2 1 4 4 C 1.50699 * 109.46753 * 119.99799 * 2 1 3 5 5 C 1.38112 * 120.04085 * 304.92201 * 4 2 1 6 6 C 1.38271 * 120.07655 * 179.70198 * 5 4 2 7 7 C 1.38319 * 120.15426 * 0.27763 * 6 5 4 8 8 C 1.38074 * 120.07033 * 0.02562 * 7 6 5 9 9 C 1.38910 * 120.03687 * 125.20126 * 4 2 1 10 10 N 1.39735 * 120.07633 * 359.97438 * 9 4 2 11 11 C 1.34774 * 119.99903 * 145.45532 * 10 9 4 12 12 O 1.21372 * 120.00027 * 4.56506 * 11 10 9 13 13 C 1.49353 * 120.00021 * 184.56697 * 11 10 9 14 14 O 1.21364 * 119.99703 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00002 * 180.02562 * 13 11 10 16 16 C 1.46498 * 119.99733 * 180.02562 * 15 13 11 17 17 C 1.50699 * 109.47065 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00304 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00227 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99761 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00254 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46822 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47332 * 119.99756 * 21 19 17 24 24 H 1.48498 * 109.47106 * 239.99949 * 21 19 17 25 25 H 1.08998 * 109.47425 * 299.99945 * 1 2 3 26 26 H 1.09005 * 109.47032 * 59.99982 * 1 2 3 27 27 H 1.09000 * 109.46878 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47425 * 240.00055 * 2 1 3 29 29 H 1.08988 * 109.47182 * 299.99616 * 3 2 1 30 30 H 1.08998 * 109.47128 * 59.99873 * 3 2 1 31 31 H 1.08999 * 109.46705 * 179.97438 * 3 2 1 32 32 H 1.08003 * 119.96170 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.92680 * 180.25681 * 6 5 4 34 34 H 1.07991 * 119.96586 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.03817 * 179.97438 * 8 7 6 36 36 H 0.96997 * 119.99788 * 325.45868 * 10 9 4 37 37 H 0.96992 * 120.00038 * 359.97438 * 15 13 11 38 38 H 1.08998 * 109.47218 * 299.99156 * 16 15 13 39 39 H 1.08998 * 109.47771 * 59.99597 * 16 15 13 40 40 H 0.97007 * 119.99798 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6174 -0.3014 2.4827 6 6 2.0729 -0.9565 3.6119 7 6 2.9497 -2.0196 3.4922 8 6 3.3734 -2.4298 2.2437 9 6 2.9176 -1.7736 1.1069 10 7 3.3436 -2.1868 -0.1582 11 6 4.5972 -2.6512 -0.3287 12 8 5.3290 -2.7887 0.6298 13 6 5.0860 -2.9966 -1.6971 14 8 4.3540 -2.8595 -2.6554 15 7 6.3394 -3.4615 -1.8675 16 6 6.8190 -3.7998 -3.2098 17 6 8.2409 -4.2917 -3.1261 18 1 8.7379 -4.3465 -2.1688 19 6 8.9075 -4.6719 -4.2716 20 7 8.3022 -4.6057 -5.4372 21 14 10.6704 -5.2810 -4.1679 22 1 11.1185 -5.2608 -2.7522 23 1 10.7462 -6.6688 -4.6908 24 1 11.5476 -4.3982 -4.9780 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 0.9329 0.5284 2.5798 33 1 1.7437 -0.6373 4.5897 34 1 3.3039 -2.5289 4.3762 35 1 4.0583 -3.2597 2.1509 36 1 2.7370 -2.1392 -0.9136 37 1 6.9242 -3.5715 -1.1016 38 1 6.1885 -4.5808 -3.6348 39 1 6.7780 -2.9144 -3.8442 40 1 8.7713 -4.8728 -6.2432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427863419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:34 Heat of formation + Delta-G solvation = -56.533850 kcal Electronic energy + Delta-G solvation = -22406.020105 eV Core-core repulsion = 18992.298220 eV Total energy + Delta-G solvation = -3413.721885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.98609 -39.38255 -37.91033 -35.58639 -35.15606 -34.17964 -32.39308 -30.18317 -29.56631 -27.72960 -27.34033 -24.89361 -23.85600 -22.78324 -21.47536 -20.17210 -19.90097 -18.75994 -17.53280 -16.62880 -16.10304 -15.78442 -15.48735 -15.26318 -14.93596 -14.37490 -14.26737 -14.13363 -13.86987 -13.71750 -13.50652 -13.14446 -12.65089 -12.32528 -12.27785 -12.09728 -12.04922 -11.93151 -11.36094 -11.21288 -11.03262 -10.98802 -10.96004 -10.84710 -10.39192 -10.31604 -9.48499 -9.16233 -8.85810 -8.84756 -8.22846 -8.12547 -6.24087 -4.31416 1.05555 1.28494 1.86274 2.64965 3.21502 3.29091 3.33114 3.53304 3.73949 4.04069 4.30701 4.43366 4.57089 4.92283 4.96643 4.98515 5.04047 5.11383 5.12861 5.25185 5.39246 5.42525 5.55313 5.61780 5.66436 5.77463 5.93770 5.98304 6.04966 6.18365 6.31745 6.39201 6.44566 6.89156 7.00381 7.05984 7.20671 7.33760 7.53521 7.83085 7.86290 8.35104 8.53582 8.80507 9.35042 10.86023 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.003181 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.125753 B = 8800.161324 C = 9519.008244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.099 4.099 5 C -0.099 4.099 6 C -0.134 4.134 7 C -0.107 4.107 8 C -0.118 4.118 9 C 0.148 3.852 10 N -0.650 5.650 11 C 0.508 3.492 12 O -0.504 6.504 13 C 0.491 3.509 14 O -0.536 6.536 15 N -0.670 5.670 16 C 0.246 3.754 17 C -0.546 4.546 18 H 0.067 0.933 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.141 0.859 36 H 0.421 0.579 37 H 0.405 0.595 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.905 8.865 15.085 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.101 4.101 5 C -0.118 4.118 6 C -0.153 4.153 7 C -0.126 4.126 8 C -0.138 4.138 9 C 0.054 3.946 10 N -0.298 5.298 11 C 0.291 3.709 12 O -0.378 6.378 13 C 0.270 3.730 14 O -0.415 6.415 15 N -0.319 5.319 16 C 0.126 3.874 17 C -0.584 4.584 18 H 0.085 0.915 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.260 0.740 37 H 0.239 0.761 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.779 8.791 14.779 22.675 hybrid contribution 0.969 -0.380 -0.053 1.042 sum -13.810 8.412 14.726 21.871 Atomic orbital electron populations 1.21866 0.94043 1.02121 1.02010 1.20085 0.96120 0.96400 0.95237 1.21816 1.01485 0.94651 1.01886 1.19677 0.99740 0.94993 0.95702 1.20744 1.00041 0.99798 0.91189 1.21108 0.98764 0.97032 0.98405 1.21040 0.97319 0.97188 0.97014 1.21343 1.00823 1.00505 0.91154 1.17625 0.97533 0.94675 0.84807 1.43267 1.13875 1.62439 1.10204 1.20903 0.81654 0.77374 0.90922 1.90720 1.55434 1.49851 1.41802 1.19679 0.84416 0.81173 0.87780 1.90735 1.55708 1.53986 1.41077 1.46421 1.11596 1.59891 1.13961 1.19360 0.94659 0.96812 0.76569 1.21240 0.97141 1.45720 0.94347 0.91483 1.24942 0.98908 0.95110 0.94937 1.69977 1.37397 1.46598 0.98246 0.86308 0.83476 0.78471 0.78399 1.19482 1.20719 1.20710 0.92378 0.92178 0.92455 0.90503 0.92162 0.92451 0.92455 0.85820 0.86111 0.85774 0.84150 0.73961 0.76064 0.94661 0.94691 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.95 37.16 0.33 -0.78 16 2 C -0.06 -0.57 3.02 -91.77 -0.28 -0.85 16 3 C -0.14 -1.27 9.05 37.16 0.34 -0.93 16 4 C -0.10 -1.09 4.80 -104.42 -0.50 -1.59 16 5 C -0.10 -0.95 8.74 -39.62 -0.35 -1.30 16 6 C -0.13 -1.27 10.04 -39.54 -0.40 -1.67 16 7 C -0.11 -1.15 10.04 -39.61 -0.40 -1.55 16 8 C -0.12 -1.56 8.70 -39.38 -0.34 -1.91 16 9 C 0.15 1.96 6.28 -83.74 -0.53 1.43 16 10 N -0.65 -9.23 4.90 -10.29 -0.05 -9.28 16 11 C 0.51 8.67 7.73 -11.63 -0.09 8.58 16 12 O -0.50 -9.14 13.89 5.48 0.08 -9.07 16 13 C 0.49 9.82 7.89 -11.63 -0.09 9.72 16 14 O -0.54 -11.77 16.48 5.48 0.09 -11.68 16 15 N -0.67 -14.39 5.54 -61.94 -0.34 -14.74 16 16 C 0.25 6.34 5.43 -5.20 -0.03 6.31 16 17 C -0.55 -14.66 9.28 -34.44 -0.32 -14.98 16 18 H 0.07 1.71 7.60 -52.49 -0.40 1.31 16 19 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.88 -25.46 13.29 55.43 0.74 -24.72 16 21 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H 0.06 0.40 7.13 -51.93 -0.37 0.02 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.80 6.04 -51.93 -0.31 0.48 16 29 H 0.06 0.48 8.14 -51.94 -0.42 0.06 16 30 H 0.06 0.45 7.69 -51.93 -0.40 0.05 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.12 0.92 7.10 -52.48 -0.37 0.54 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 2.04 6.21 -52.48 -0.33 1.71 16 36 H 0.42 5.46 6.64 -40.82 -0.27 5.18 16 37 H 0.40 8.07 7.79 -40.82 -0.32 7.75 16 38 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -30.30 339.85 -7.42 -37.73 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.29 Total: 8.80 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.75 Total: 2.18 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.34 Total: -48.74 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.17 Total: -20.75 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.30 -7.42 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427863419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.809 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds