Wall clock time and date at job start Tue Mar 31 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46716 * 2 1 4 4 C 1.50699 * 109.46753 * 119.99799 * 2 1 3 5 5 C 1.38112 * 120.04085 * 304.92201 * 4 2 1 6 6 C 1.38271 * 120.07655 * 179.70198 * 5 4 2 7 7 C 1.38319 * 120.15426 * 0.27763 * 6 5 4 8 8 C 1.38074 * 120.07033 * 0.02562 * 7 6 5 9 9 C 1.38910 * 120.03687 * 125.20126 * 4 2 1 10 10 N 1.39735 * 120.07633 * 359.97438 * 9 4 2 11 11 C 1.34774 * 119.99903 * 145.45532 * 10 9 4 12 12 O 1.21372 * 120.00027 * 4.56506 * 11 10 9 13 13 C 1.49353 * 120.00021 * 184.56697 * 11 10 9 14 14 O 1.21364 * 119.99703 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00002 * 180.02562 * 13 11 10 16 16 C 1.46498 * 119.99733 * 180.02562 * 15 13 11 17 17 C 1.50699 * 109.47065 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00304 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00227 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99761 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00254 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46822 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47332 * 119.99756 * 21 19 17 24 24 H 1.48498 * 109.47106 * 239.99949 * 21 19 17 25 25 H 1.08998 * 109.47425 * 299.99945 * 1 2 3 26 26 H 1.09005 * 109.47032 * 59.99982 * 1 2 3 27 27 H 1.09000 * 109.46878 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47425 * 240.00055 * 2 1 3 29 29 H 1.08988 * 109.47182 * 299.99616 * 3 2 1 30 30 H 1.08998 * 109.47128 * 59.99873 * 3 2 1 31 31 H 1.08999 * 109.46705 * 179.97438 * 3 2 1 32 32 H 1.08003 * 119.96170 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.92680 * 180.25681 * 6 5 4 34 34 H 1.07991 * 119.96586 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.03817 * 179.97438 * 8 7 6 36 36 H 0.96997 * 119.99788 * 325.45868 * 10 9 4 37 37 H 0.96992 * 120.00038 * 359.97438 * 15 13 11 38 38 H 1.08998 * 109.47218 * 299.99156 * 16 15 13 39 39 H 1.08998 * 109.47771 * 59.99597 * 16 15 13 40 40 H 0.97007 * 119.99798 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6174 -0.3014 2.4827 6 6 2.0729 -0.9565 3.6119 7 6 2.9497 -2.0196 3.4922 8 6 3.3734 -2.4298 2.2437 9 6 2.9176 -1.7736 1.1069 10 7 3.3436 -2.1868 -0.1582 11 6 4.5972 -2.6512 -0.3287 12 8 5.3290 -2.7887 0.6298 13 6 5.0860 -2.9966 -1.6971 14 8 4.3540 -2.8595 -2.6554 15 7 6.3394 -3.4615 -1.8675 16 6 6.8190 -3.7998 -3.2098 17 6 8.2409 -4.2917 -3.1261 18 1 8.7379 -4.3465 -2.1688 19 6 8.9075 -4.6719 -4.2716 20 7 8.3022 -4.6057 -5.4372 21 14 10.6704 -5.2810 -4.1679 22 1 11.1185 -5.2608 -2.7522 23 1 10.7462 -6.6688 -4.6908 24 1 11.5476 -4.3982 -4.9780 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 0.9329 0.5284 2.5798 33 1 1.7437 -0.6373 4.5897 34 1 3.3039 -2.5289 4.3762 35 1 4.0583 -3.2597 2.1509 36 1 2.7370 -2.1392 -0.9136 37 1 6.9242 -3.5715 -1.1016 38 1 6.1885 -4.5808 -3.6348 39 1 6.7780 -2.9144 -3.8442 40 1 8.7713 -4.8728 -6.2432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427863419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:33 Heat of formation + Delta-G solvation = -76.115440 kcal Electronic energy + Delta-G solvation = -22406.869226 eV Core-core repulsion = 18992.298220 eV Total energy + Delta-G solvation = -3414.571006 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.23676 -40.64678 -39.35415 -36.70918 -36.31700 -35.76066 -34.38623 -31.09082 -30.51445 -29.66493 -27.98833 -26.47310 -24.77619 -24.34368 -22.78448 -21.42118 -20.97960 -20.20590 -18.71939 -18.31623 -17.56030 -17.22721 -16.95073 -16.55689 -16.26883 -15.91931 -15.44577 -15.16863 -14.85853 -14.72533 -14.64273 -14.46354 -14.10897 -13.94341 -13.41210 -13.19577 -13.03962 -12.96967 -12.85864 -12.77458 -12.47137 -12.22199 -12.07670 -11.88595 -11.59844 -11.52272 -11.35792 -10.87643 -10.71281 -10.09913 -9.70371 -9.18538 -8.33374 -6.49610 -0.06854 0.43129 0.58916 1.25360 1.43368 1.43901 1.57861 2.04115 2.34606 2.65231 2.82651 3.02119 3.38548 3.65091 3.81173 4.14619 4.26719 4.28069 4.31488 4.48550 4.53319 4.63265 4.82216 4.92199 4.94756 4.99255 5.05559 5.14335 5.16960 5.20624 5.24172 5.28022 5.37526 5.42546 5.48265 5.57147 5.60991 5.75370 5.93468 6.05366 6.42501 6.55229 6.69720 6.94931 7.23394 8.78549 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.003181 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.125753 B = 8800.161324 C = 9519.008244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.097 4.097 5 C -0.098 4.098 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.138 4.138 9 C 0.115 3.885 10 N -0.634 5.634 11 C 0.518 3.482 12 O -0.517 6.517 13 C 0.493 3.507 14 O -0.557 6.557 15 N -0.671 5.671 16 C 0.263 3.737 17 C -0.562 4.562 18 H 0.079 0.921 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.983 3.017 22 H -0.258 1.258 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.120 0.880 36 H 0.425 0.575 37 H 0.413 0.587 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.556 9.967 17.410 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.196 4.196 4 C -0.099 4.099 5 C -0.116 4.116 6 C -0.141 4.141 7 C -0.131 4.131 8 C -0.158 4.158 9 C 0.022 3.978 10 N -0.281 5.281 11 C 0.300 3.700 12 O -0.392 6.392 13 C 0.273 3.727 14 O -0.437 6.437 15 N -0.321 5.321 16 C 0.141 3.859 17 C -0.600 4.600 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.563 5.563 21 Si 0.806 3.194 22 H -0.182 1.182 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.161 0.839 35 H 0.138 0.862 36 H 0.265 0.735 37 H 0.249 0.751 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.474 9.913 17.145 25.133 hybrid contribution 1.020 -0.651 -0.708 1.402 sum -14.455 9.262 16.437 23.767 Atomic orbital electron populations 1.21841 0.92286 1.02240 1.03227 1.20140 0.97540 0.96429 0.94037 1.21811 1.00207 0.94418 1.03208 1.19901 0.98742 0.94118 0.97115 1.21129 0.99869 1.00235 0.90362 1.21527 0.97060 0.95596 0.99949 1.21308 0.97484 0.97784 0.96545 1.21338 1.01399 1.00634 0.92458 1.17864 0.99546 0.96529 0.83885 1.43102 1.12589 1.61164 1.11259 1.20114 0.82674 0.78236 0.88980 1.90721 1.56067 1.50996 1.41392 1.20186 0.83566 0.79827 0.89086 1.90713 1.56141 1.54449 1.42426 1.46153 1.12563 1.60729 1.12672 1.18853 0.94429 0.94512 0.78092 1.21590 0.97497 1.45773 0.95118 0.90251 1.25967 1.03689 0.94971 0.94373 1.70105 1.39524 1.47495 0.99174 0.85129 0.77454 0.77819 0.78964 1.18185 1.20189 1.20184 0.90754 0.91395 0.92894 0.92060 0.91281 0.90743 0.94422 0.82869 0.82773 0.83905 0.86231 0.73457 0.75053 0.97598 0.97660 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.95 71.98 0.64 -1.18 16 2 C -0.06 -1.11 3.02 -11.54 -0.03 -1.15 16 3 C -0.14 -2.26 9.05 71.98 0.65 -1.60 16 4 C -0.10 -1.98 4.80 -19.73 -0.09 -2.07 16 5 C -0.10 -1.54 8.74 22.25 0.19 -1.34 16 6 C -0.12 -1.88 10.04 22.30 0.22 -1.66 16 7 C -0.11 -2.21 10.04 22.25 0.22 -1.98 16 8 C -0.14 -3.63 8.70 22.40 0.19 -3.43 16 9 C 0.11 3.01 6.28 38.21 0.24 3.25 16 10 N -0.63 -18.43 4.90 -304.84 -1.49 -19.92 16 11 C 0.52 18.21 7.73 87.24 0.67 18.89 16 12 O -0.52 -19.18 13.89 -3.32 -0.05 -19.23 16 13 C 0.49 20.53 7.89 87.24 0.69 21.21 16 14 O -0.56 -25.56 16.48 -3.29 -0.05 -25.62 16 15 N -0.67 -29.98 5.54 -468.25 -2.59 -32.57 16 16 C 0.26 14.18 5.43 85.63 0.46 14.65 16 17 C -0.56 -30.68 9.28 25.60 0.24 -30.44 16 18 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 19 C 0.01 0.57 5.46 84.66 0.46 1.03 16 20 N -0.92 -54.42 13.29 21.45 0.28 -54.13 16 21 Si 0.98 42.35 29.54 68.60 2.03 44.38 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 23 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 25 H 0.07 0.74 7.13 -2.39 -0.02 0.72 16 26 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 1.26 6.04 -2.39 -0.01 1.25 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.94 7.69 -2.39 -0.02 0.92 16 31 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.15 1.52 7.10 -2.91 -0.02 1.50 16 33 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.14 2.17 8.06 -2.92 -0.02 2.14 16 35 H 0.12 3.59 6.21 -2.91 -0.02 3.57 16 36 H 0.43 11.40 6.64 -92.71 -0.62 10.78 16 37 H 0.41 16.92 7.79 -92.71 -0.72 16.20 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -66.89 339.85 2.63 -64.26 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.26 Total: 28.66 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 4.77 Total: 14.17 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -3.80 Total: -106.63 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.10 Total: -44.84 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -66.89 2.63 -64.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427863419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.855 kcal (2) G-P(sol) polarization free energy of solvation -66.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds