Wall clock time and date at job start Tue Mar 31 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47012 * 2 1 4 4 C 1.38312 * 119.92529 * 265.00119 * 3 2 1 5 5 C 1.38068 * 120.07548 * 179.97438 * 4 3 2 6 6 C 1.38950 * 119.92791 * 0.02562 * 5 4 3 7 7 N 1.39725 * 120.07980 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00538 * 213.32986 * 7 6 5 9 9 O 1.21380 * 119.99707 * 5.28156 * 8 7 6 10 10 C 1.49346 * 120.00443 * 185.28034 * 8 7 6 11 11 O 1.21357 * 119.99754 * 359.97438 * 10 8 7 12 12 N 1.34778 * 120.00231 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00022 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47139 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00316 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99821 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00258 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99838 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47022 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47101 * 120.00163 * 18 16 14 21 21 H 1.48497 * 109.47276 * 240.00496 * 18 16 14 22 22 C 1.38909 * 119.84370 * 0.02562 * 6 5 4 23 23 C 1.38121 * 119.92428 * 359.71843 * 22 6 5 24 24 C 1.50703 * 119.96311 * 180.29852 * 23 22 6 25 25 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46997 * 299.99465 * 1 2 3 27 27 H 1.08989 * 109.47541 * 59.99765 * 1 2 3 28 28 H 1.09002 * 109.47321 * 120.00440 * 2 1 3 29 29 H 1.09002 * 109.47079 * 239.99773 * 2 1 3 30 30 H 1.08002 * 119.96192 * 359.97438 * 4 3 2 31 31 H 1.08013 * 120.03645 * 180.02562 * 5 4 3 32 32 H 0.97008 * 119.99472 * 33.33487 * 7 6 5 33 33 H 0.96997 * 120.00120 * 0.02562 * 12 10 8 34 34 H 1.08997 * 109.47871 * 300.00150 * 13 12 10 35 35 H 1.08999 * 109.46881 * 60.00623 * 13 12 10 36 36 H 0.97001 * 120.00247 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.03553 * 180.02562 * 22 6 5 38 38 H 1.08995 * 109.47244 * 270.23709 * 24 23 22 39 39 H 1.09002 * 109.46843 * 30.23388 * 24 23 22 40 40 H 1.08997 * 109.47340 * 150.23537 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0366 -1.1942 5 6 2.8208 3.3383 -1.1978 6 6 2.9541 4.0298 0.0000 7 7 3.4188 5.3475 0.0000 8 6 4.1657 5.7988 1.0270 9 8 4.5153 5.0362 1.9041 10 6 4.5633 7.2372 1.0858 11 8 4.2141 7.9996 0.2086 12 7 5.3107 7.6883 2.1127 13 6 5.7011 9.0991 2.1701 14 6 6.5256 9.3422 3.4079 15 1 6.7380 8.5273 4.0839 16 6 7.0098 10.6049 3.6767 17 7 6.7517 11.5972 2.8532 18 14 8.0325 10.9061 5.2106 19 1 8.1788 9.6356 5.9653 20 1 9.3749 11.4067 4.8202 21 1 7.3572 11.9151 6.0656 22 6 2.6243 3.4080 1.1976 23 6 2.1597 2.1073 1.1935 24 6 1.7953 1.4341 2.4916 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.2573 1.4984 -2.1248 31 1 3.0767 3.8187 -2.1308 32 1 3.2037 5.9376 -0.7394 33 1 5.5907 7.0787 2.8133 34 1 6.2885 9.3499 1.2868 35 1 4.8074 9.7224 2.2012 36 1 7.0920 12.4856 3.0425 37 1 2.7264 3.9427 2.1304 38 1 2.6722 0.9308 2.8986 39 1 1.4431 2.1818 3.2022 40 1 1.0070 0.7029 2.3129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427870423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:29 Heat of formation + Delta-G solvation = -62.065734 kcal Electronic energy + Delta-G solvation = -21943.609071 eV Core-core repulsion = 18529.647306 eV Total energy + Delta-G solvation = -3413.961765 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.87012 -39.47396 -38.01062 -35.82822 -34.43891 -33.16119 -32.58140 -32.36310 -29.09122 -27.71417 -27.18372 -25.10776 -23.52685 -22.37606 -22.00068 -20.55577 -19.91836 -18.57954 -17.20186 -16.55883 -16.08074 -15.86833 -15.54139 -15.31321 -14.99706 -14.30149 -14.26783 -14.00580 -13.93608 -13.51679 -13.30299 -13.11840 -13.00875 -12.56516 -12.32125 -12.14347 -12.08886 -11.91160 -11.58426 -11.39675 -11.04629 -11.01108 -10.95988 -10.92411 -10.35184 -10.24365 -9.48401 -9.16772 -8.85654 -8.81659 -8.15783 -8.08072 -6.23931 -4.31276 1.02507 1.28422 1.86976 2.65332 3.21524 3.29082 3.33114 3.49345 3.73519 4.04564 4.30759 4.56330 4.61587 4.80493 4.87069 5.04162 5.08241 5.12951 5.14951 5.20360 5.29957 5.39491 5.48715 5.58070 5.63127 5.73719 5.75766 5.89797 6.00549 6.19696 6.22408 6.37739 6.54945 6.89307 7.01117 7.06398 7.21799 7.33993 7.53877 7.83547 7.86991 8.35443 8.53975 8.80744 9.35148 10.86180 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034922 B = 0.002721 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.595437 B =10288.466616 C =10891.709866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.103 4.103 4 C -0.095 4.095 5 C -0.147 4.147 6 C 0.149 3.851 7 N -0.652 5.652 8 C 0.508 3.492 9 O -0.504 6.504 10 C 0.491 3.509 11 O -0.536 6.536 12 N -0.670 5.670 13 C 0.246 3.754 14 C -0.546 4.546 15 H 0.067 0.933 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.119 4.119 23 C -0.064 4.064 24 C -0.118 4.118 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.423 0.577 33 H 0.404 0.596 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.267 0.733 37 H 0.136 0.864 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.265 -21.602 -6.187 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.103 4.103 4 C -0.114 4.114 5 C -0.167 4.167 6 C 0.055 3.945 7 N -0.298 5.298 8 C 0.291 3.709 9 O -0.377 6.377 10 C 0.269 3.731 11 O -0.415 6.415 12 N -0.319 5.319 13 C 0.126 3.874 14 C -0.584 4.584 15 H 0.085 0.915 16 C -0.139 4.139 17 N -0.522 5.522 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.139 4.139 23 C -0.065 4.065 24 C -0.174 4.174 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.261 0.739 33 H 0.239 0.761 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.154 0.846 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.179 -21.284 -6.148 24.815 hybrid contribution 0.680 0.441 0.629 1.026 sum -10.499 -20.843 -5.518 23.982 Atomic orbital electron populations 1.21777 0.94909 1.01525 1.02338 1.20499 0.96017 0.92725 1.02729 1.19710 1.01585 0.96422 0.92618 1.20757 0.99040 0.94073 0.97510 1.20882 1.04105 0.95014 0.96717 1.17742 0.97675 0.84549 0.94524 1.43248 1.50811 1.11374 1.24398 1.20900 0.78149 0.90006 0.81841 1.90744 1.52201 1.57388 1.37376 1.19683 0.81900 0.87000 0.84468 1.90735 1.55374 1.57005 1.38372 1.46425 1.48154 1.14528 1.22814 1.19360 0.96135 0.73749 0.98167 1.21237 1.34010 0.95602 1.07570 0.91487 1.24945 0.96089 0.95615 0.97273 1.69972 1.44616 1.01162 1.36468 0.86306 0.79704 0.78451 0.82182 1.19495 1.20718 1.20711 1.21057 0.99699 0.95321 0.97834 1.19601 0.98255 0.93560 0.95059 1.20868 1.01796 1.00627 0.94111 0.92550 0.92388 0.92547 0.90939 0.91240 0.85753 0.85528 0.73936 0.76067 0.94678 0.94682 0.92362 0.84644 0.90980 0.91434 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.70 37.16 0.36 -0.59 16 2 C -0.08 -0.60 5.36 -27.88 -0.15 -0.75 16 3 C -0.10 -1.02 5.14 -104.58 -0.54 -1.55 16 4 C -0.10 -0.92 9.67 -39.62 -0.38 -1.31 16 5 C -0.15 -1.60 9.96 -39.38 -0.39 -2.00 16 6 C 0.15 1.98 6.28 -83.75 -0.53 1.46 16 7 N -0.65 -9.22 5.32 -10.30 -0.05 -9.28 16 8 C 0.51 8.71 7.62 -11.64 -0.09 8.62 16 9 O -0.50 -9.24 14.16 5.47 0.08 -9.16 16 10 C 0.49 9.85 7.89 -11.63 -0.09 9.76 16 11 O -0.54 -11.84 16.48 5.49 0.09 -11.75 16 12 N -0.67 -14.46 5.54 -61.95 -0.34 -14.80 16 13 C 0.25 6.36 5.43 -5.20 -0.03 6.33 16 14 C -0.55 -14.68 9.28 -34.44 -0.32 -15.00 16 15 H 0.07 1.72 7.60 -52.49 -0.40 1.32 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.88 -25.51 13.29 55.43 0.74 -24.77 16 18 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.12 -1.61 8.31 -39.38 -0.33 -1.94 16 23 C -0.06 -0.72 5.88 -104.65 -0.62 -1.34 16 24 C -0.12 -1.05 9.21 36.01 0.33 -0.71 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.39 6.88 -51.93 -0.36 0.04 16 27 H 0.06 0.37 8.14 -51.94 -0.42 -0.05 16 28 H 0.07 0.50 6.99 -51.93 -0.36 0.13 16 29 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.42 5.29 8.30 -40.82 -0.34 4.95 16 33 H 0.40 8.09 7.79 -40.82 -0.32 7.78 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.14 2.01 6.42 -52.49 -0.34 1.67 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 40 H 0.07 0.51 5.39 -51.93 -0.28 0.23 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -30.80 341.46 -7.56 -38.36 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.32 Total: 7.90 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.86 Total: 2.66 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.34 Total: -48.85 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.17 Total: -20.91 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.80 -7.56 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427870423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.711 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds