Wall clock time and date at job start Tue Mar 31 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47012 * 2 1 4 4 C 1.38312 * 119.92529 * 265.00119 * 3 2 1 5 5 C 1.38068 * 120.07548 * 179.97438 * 4 3 2 6 6 C 1.38950 * 119.92791 * 0.02562 * 5 4 3 7 7 N 1.39725 * 120.07980 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00538 * 213.32986 * 7 6 5 9 9 O 1.21380 * 119.99707 * 5.28156 * 8 7 6 10 10 C 1.49346 * 120.00443 * 185.28034 * 8 7 6 11 11 O 1.21357 * 119.99754 * 359.97438 * 10 8 7 12 12 N 1.34778 * 120.00231 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00022 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47139 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00316 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99821 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00258 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99838 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47022 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47101 * 120.00163 * 18 16 14 21 21 H 1.48497 * 109.47276 * 240.00496 * 18 16 14 22 22 C 1.38909 * 119.84370 * 0.02562 * 6 5 4 23 23 C 1.38121 * 119.92428 * 359.71843 * 22 6 5 24 24 C 1.50703 * 119.96311 * 180.29852 * 23 22 6 25 25 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46997 * 299.99465 * 1 2 3 27 27 H 1.08989 * 109.47541 * 59.99765 * 1 2 3 28 28 H 1.09002 * 109.47321 * 120.00440 * 2 1 3 29 29 H 1.09002 * 109.47079 * 239.99773 * 2 1 3 30 30 H 1.08002 * 119.96192 * 359.97438 * 4 3 2 31 31 H 1.08013 * 120.03645 * 180.02562 * 5 4 3 32 32 H 0.97008 * 119.99472 * 33.33487 * 7 6 5 33 33 H 0.96997 * 120.00120 * 0.02562 * 12 10 8 34 34 H 1.08997 * 109.47871 * 300.00150 * 13 12 10 35 35 H 1.08999 * 109.46881 * 60.00623 * 13 12 10 36 36 H 0.97001 * 120.00247 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.03553 * 180.02562 * 22 6 5 38 38 H 1.08995 * 109.47244 * 270.23709 * 24 23 22 39 39 H 1.09002 * 109.46843 * 30.23388 * 24 23 22 40 40 H 1.08997 * 109.47340 * 150.23537 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0366 -1.1942 5 6 2.8208 3.3383 -1.1978 6 6 2.9541 4.0298 0.0000 7 7 3.4188 5.3475 0.0000 8 6 4.1657 5.7988 1.0270 9 8 4.5153 5.0362 1.9041 10 6 4.5633 7.2372 1.0858 11 8 4.2141 7.9996 0.2086 12 7 5.3107 7.6883 2.1127 13 6 5.7011 9.0991 2.1701 14 6 6.5256 9.3422 3.4079 15 1 6.7380 8.5273 4.0839 16 6 7.0098 10.6049 3.6767 17 7 6.7517 11.5972 2.8532 18 14 8.0325 10.9061 5.2106 19 1 8.1788 9.6356 5.9653 20 1 9.3749 11.4067 4.8202 21 1 7.3572 11.9151 6.0656 22 6 2.6243 3.4080 1.1976 23 6 2.1597 2.1073 1.1935 24 6 1.7953 1.4341 2.4916 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.2573 1.4984 -2.1248 31 1 3.0767 3.8187 -2.1308 32 1 3.2037 5.9376 -0.7394 33 1 5.5907 7.0787 2.8133 34 1 6.2885 9.3499 1.2868 35 1 4.8074 9.7224 2.2012 36 1 7.0920 12.4856 3.0425 37 1 2.7264 3.9427 2.1304 38 1 2.6722 0.9308 2.8986 39 1 1.4431 2.1818 3.2022 40 1 1.0070 0.7029 2.3129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427870423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:28 Heat of formation + Delta-G solvation = -82.319666 kcal Electronic energy + Delta-G solvation = -21944.487348 eV Core-core repulsion = 18529.647306 eV Total energy + Delta-G solvation = -3414.840042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.15411 -40.64997 -39.46737 -37.02763 -36.19810 -34.45698 -33.97249 -33.36193 -30.15198 -29.51089 -27.98309 -26.53334 -24.84029 -23.55711 -23.13719 -21.62604 -21.31936 -20.10085 -18.38293 -18.32358 -17.42307 -17.17886 -16.93064 -16.56508 -16.46005 -15.92666 -15.38048 -15.09668 -14.94433 -14.66289 -14.41446 -14.11130 -14.07844 -13.94212 -13.72385 -13.26736 -13.09647 -13.00963 -12.87905 -12.77553 -12.76642 -12.26250 -12.20237 -11.74278 -11.63282 -11.52325 -11.27128 -10.87688 -10.72785 -10.09628 -9.70168 -9.04927 -8.33407 -6.49613 -0.09691 0.41499 0.58607 1.25048 1.43253 1.43766 1.57722 2.03996 2.34581 2.67069 2.76292 3.02013 3.39089 3.84614 3.89034 4.02612 4.22099 4.30822 4.41245 4.58559 4.59344 4.69266 4.80159 4.81418 4.94697 4.95408 5.11575 5.13562 5.14426 5.17736 5.22336 5.26552 5.32775 5.46474 5.50747 5.51411 5.73650 5.75455 5.93858 6.05362 6.44390 6.55574 6.70802 6.95345 7.23361 8.78498 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034922 B = 0.002721 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.595437 B =10288.466616 C =10891.709866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.098 4.098 4 C -0.094 4.094 5 C -0.143 4.143 6 C 0.119 3.881 7 N -0.634 5.634 8 C 0.518 3.482 9 O -0.518 6.518 10 C 0.494 3.506 11 O -0.557 6.557 12 N -0.672 5.672 13 C 0.263 3.737 14 C -0.561 4.561 15 H 0.079 0.921 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.983 3.017 19 H -0.258 1.258 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.140 4.140 23 C -0.075 4.075 24 C -0.117 4.117 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.430 0.570 33 H 0.413 0.587 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.271 0.729 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.569 -24.186 -6.273 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.113 4.113 5 C -0.163 4.163 6 C 0.026 3.974 7 N -0.281 5.281 8 C 0.300 3.700 9 O -0.393 6.393 10 C 0.274 3.726 11 O -0.437 6.437 12 N -0.322 5.322 13 C 0.141 3.859 14 C -0.599 4.599 15 H 0.097 0.903 16 C -0.191 4.191 17 N -0.563 5.563 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.161 4.161 23 C -0.075 4.075 24 C -0.173 4.173 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.173 0.827 31 H 0.165 0.835 32 H 0.269 0.731 33 H 0.249 0.751 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.516 -23.918 -6.259 27.274 hybrid contribution 0.667 1.134 0.543 1.424 sum -10.849 -22.784 -5.716 25.874 Atomic orbital electron populations 1.21766 0.94159 1.02482 1.01993 1.20581 0.96526 0.90908 1.03880 1.20113 0.99987 0.97642 0.92092 1.21170 0.97727 0.93596 0.98777 1.21154 1.03205 0.95479 0.96465 1.17969 0.99745 0.84082 0.95628 1.43075 1.49475 1.12209 1.23340 1.20111 0.78974 0.88131 0.82768 1.90744 1.53265 1.57067 1.38193 1.20178 0.80656 0.88433 0.83335 1.90713 1.55828 1.58200 1.38962 1.46161 1.49038 1.13100 1.23903 1.18853 0.94357 0.75661 0.97034 1.21585 1.34116 0.96314 1.07902 0.90263 1.25973 0.97177 0.95229 1.00680 1.70101 1.45801 1.01802 1.38599 0.85128 0.77714 0.78711 0.77805 1.18200 1.20192 1.20174 1.21058 1.01325 0.96505 0.97167 1.19877 0.98027 0.92886 0.96738 1.20908 1.02550 1.00796 0.93034 0.90972 0.92980 0.92699 0.90300 0.89670 0.82663 0.83526 0.73114 0.75057 0.97608 0.97649 0.92003 0.86843 0.90589 0.91936 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.70 71.98 0.70 -0.74 16 2 C -0.08 -0.92 5.36 29.85 0.16 -0.76 16 3 C -0.10 -1.69 5.14 -19.84 -0.10 -1.79 16 4 C -0.09 -1.55 9.67 22.25 0.22 -1.34 16 5 C -0.14 -2.84 9.96 22.40 0.22 -2.62 16 6 C 0.12 3.10 6.28 38.21 0.24 3.34 16 7 N -0.63 -18.00 5.32 -304.85 -1.62 -19.62 16 8 C 0.52 18.11 7.62 87.24 0.66 18.77 16 9 O -0.52 -19.35 14.16 -3.34 -0.05 -19.40 16 10 C 0.49 20.45 7.89 87.24 0.69 21.14 16 11 O -0.56 -25.44 16.48 -3.27 -0.05 -25.49 16 12 N -0.67 -29.98 5.54 -468.26 -2.59 -32.57 16 13 C 0.26 14.17 5.43 85.63 0.46 14.63 16 14 C -0.56 -30.65 9.28 25.60 0.24 -30.41 16 15 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 16 C 0.01 0.54 5.46 84.66 0.46 1.00 16 17 N -0.92 -54.45 13.29 21.45 0.28 -54.16 16 18 Si 0.98 42.38 29.54 68.60 2.03 44.40 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 22 C -0.14 -3.81 8.31 22.40 0.19 -3.63 16 23 C -0.07 -1.60 5.88 -19.88 -0.12 -1.72 16 24 C -0.12 -1.94 9.21 71.24 0.66 -1.28 16 25 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.58 6.88 -2.38 -0.02 0.56 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.82 6.99 -2.39 -0.02 0.80 16 29 H 0.08 0.73 8.05 -2.39 -0.02 0.71 16 30 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.15 2.24 8.06 -2.90 -0.02 2.22 16 32 H 0.43 10.71 8.30 -92.70 -0.77 9.94 16 33 H 0.41 16.91 7.79 -92.71 -0.72 16.18 16 34 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.11 3.52 6.42 -2.91 -0.02 3.50 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 40 H 0.09 1.11 5.39 -2.39 -0.01 1.10 16 Total: -1.00 -67.60 341.46 2.26 -65.34 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.41 Total: 26.90 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 4.68 Total: 14.60 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.93 Total: -106.36 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.10 Total: -44.89 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -67.60 2.26 -65.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427870423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.978 kcal (2) G-P(sol) polarization free energy of solvation -67.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds