Wall clock time and date at job start Tue Mar 31 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47382 * 2 1 4 4 C 1.53004 * 109.46922 * 119.99792 * 2 1 3 5 5 N 1.46496 * 109.46980 * 174.99830 * 4 2 1 6 6 C 1.34787 * 119.99915 * 180.02562 * 5 4 2 7 7 O 1.21360 * 119.99648 * 0.02562 * 6 5 4 8 8 C 1.49357 * 119.99655 * 180.02562 * 6 5 4 9 9 O 1.21367 * 120.00130 * 0.02562 * 8 6 5 10 10 N 1.34780 * 119.99366 * 180.02562 * 8 6 5 11 11 C 1.39743 * 119.99714 * 185.11396 * 10 8 6 12 12 C 1.39344 * 119.95114 * 34.20000 * 11 10 8 13 13 C 1.38468 * 120.41849 * 179.97438 * 12 11 10 14 14 C 1.37693 * 120.33083 * 0.28100 * 13 12 11 15 15 C 1.40744 * 119.89527 * 359.49464 * 14 13 12 16 16 C 1.41413 * 120.20765 * 180.24943 * 15 14 13 17 17 H 1.07999 * 120.00217 * 205.30599 * 16 15 14 18 18 C 1.39933 * 119.99910 * 25.31228 * 16 15 14 19 19 N 1.30826 * 120.00058 * 16.69518 * 18 16 15 20 20 Si 1.86802 * 120.00125 * 196.69109 * 18 16 15 21 21 H 1.48501 * 109.47181 * 89.99670 * 20 18 16 22 22 H 1.48496 * 109.47457 * 210.00328 * 20 18 16 23 23 H 1.48510 * 109.46950 * 330.00156 * 20 18 16 24 24 C 1.38304 * 119.95238 * 214.22580 * 11 10 8 25 25 H 1.09006 * 109.46853 * 300.00170 * 1 2 3 26 26 H 1.08994 * 109.46947 * 59.99754 * 1 2 3 27 27 H 1.08996 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47500 * 239.99867 * 2 1 3 29 29 H 1.09008 * 109.47141 * 59.99554 * 3 2 1 30 30 H 1.08998 * 109.47127 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47083 * 300.00438 * 3 2 1 32 32 H 1.09000 * 109.47116 * 55.00011 * 4 2 1 33 33 H 1.08997 * 109.47111 * 295.00207 * 4 2 1 34 34 H 0.96993 * 120.00253 * 0.02562 * 5 4 2 35 35 H 0.96996 * 120.00056 * 5.11378 * 10 8 6 36 36 H 1.07990 * 119.79277 * 0.02562 * 12 11 10 37 37 H 1.08007 * 119.83639 * 179.97438 * 13 12 11 38 38 H 1.08009 * 120.05223 * 179.73911 * 14 13 12 39 39 H 0.97001 * 120.00187 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.15967 * 359.94905 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1909 7 8 3.5693 -1.8853 3.1398 8 6 5.6615 -1.5359 2.1313 9 8 6.2652 -1.0794 1.1824 10 7 6.3344 -2.1392 3.1312 11 6 7.7318 -2.1453 3.1289 12 6 8.4314 -1.0528 2.6204 13 6 9.8161 -1.0484 2.6139 14 6 10.5172 -2.1269 3.1050 15 6 9.8243 -3.2356 3.6262 16 6 10.5377 -4.3445 4.1371 17 1 10.0775 -5.3214 4.1542 18 6 11.8401 -4.1762 4.6205 19 7 12.2816 -2.9785 4.9074 20 14 12.9481 -5.6614 4.8564 21 1 13.7104 -5.9138 3.6072 22 1 13.8952 -5.4007 5.9701 23 1 12.1196 -6.8508 5.1795 24 6 8.4184 -3.2359 3.6309 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9824 -0.4623 0.4320 35 1 5.8487 -2.5691 3.8524 36 1 7.8904 -0.2038 2.2297 37 1 10.3489 -0.1968 2.2171 38 1 11.5972 -2.1205 3.0938 39 1 13.1845 -2.8618 5.2421 40 1 7.8771 -4.0831 4.0257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453558419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:48 Heat of formation + Delta-G solvation = -64.387740 kcal Electronic energy + Delta-G solvation = -21976.246277 eV Core-core repulsion = 18562.183822 eV Total energy + Delta-G solvation = -3414.062455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62139 -38.88649 -37.19686 -36.96073 -34.69492 -33.45595 -32.99513 -29.89134 -28.65308 -27.56664 -27.06766 -25.29982 -23.94098 -21.23872 -20.94592 -20.81914 -19.71255 -18.32633 -17.61275 -16.61364 -16.13256 -15.63728 -15.52248 -15.17361 -14.98364 -14.58098 -14.19777 -13.97879 -13.70012 -13.28023 -13.01317 -12.92777 -12.68852 -12.42617 -12.27802 -11.72828 -11.62158 -11.51965 -11.34190 -11.31973 -11.16803 -11.12454 -10.66541 -10.55144 -10.15371 -9.81037 -9.45480 -9.36614 -9.21080 -8.99440 -7.51979 -7.00104 -6.77786 -4.40466 1.49651 2.47800 2.77326 2.85916 3.07034 3.10441 3.19834 3.52998 3.85890 3.93195 4.33296 4.48095 4.60700 4.63600 4.70062 5.13237 5.21680 5.28982 5.38958 5.47594 5.56289 5.64212 5.70349 5.85476 5.91368 6.11563 6.21753 6.43778 6.58498 6.82140 6.87707 6.98843 7.09661 7.20303 7.47296 7.53872 7.74437 7.93326 7.98594 8.05479 8.21432 8.37624 8.60278 8.85566 8.90936 10.17389 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044165 B = 0.002711 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.829235 B =10324.659096 C =10722.236310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.152 4.152 4 C 0.121 3.879 5 N -0.703 5.703 6 C 0.510 3.490 7 O -0.523 6.523 8 C 0.497 3.503 9 O -0.506 6.506 10 N -0.631 5.631 11 C 0.145 3.855 12 C -0.224 4.224 13 C -0.095 4.095 14 C -0.162 4.162 15 C 0.121 3.879 16 C -0.463 4.463 17 H 0.078 0.922 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.910 3.090 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.238 4.238 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.413 0.587 35 H 0.412 0.588 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.281 0.719 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.198 5.213 -6.992 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.210 4.210 4 C -0.002 4.002 5 N -0.358 5.358 6 C 0.291 3.709 7 O -0.398 6.398 8 C 0.278 3.722 9 O -0.381 6.381 10 N -0.276 5.276 11 C 0.054 3.946 12 C -0.245 4.245 13 C -0.114 4.114 14 C -0.182 4.182 15 C 0.118 3.882 16 C -0.492 4.492 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.420 5.420 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.260 4.260 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.249 0.751 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.092 0.908 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.041 5.352 -6.869 18.252 hybrid contribution 0.501 -0.626 0.209 0.829 sum -15.540 4.726 -6.660 17.555 Atomic orbital electron populations 1.21760 0.93827 1.02267 1.02361 1.21380 0.96817 0.96904 0.97762 1.21903 1.01475 0.95333 1.02244 1.21566 0.78857 1.01181 0.98639 1.45774 1.07932 1.58393 1.23661 1.20313 0.88676 0.78937 0.83008 1.90749 1.69966 1.46439 1.32682 1.19964 0.87648 0.80895 0.83702 1.90771 1.69266 1.46095 1.32018 1.43190 1.06595 1.53406 1.24405 1.17443 0.78938 0.95727 1.02512 1.20287 0.93963 0.98195 1.12015 1.20576 0.93136 0.97832 0.99902 1.21421 0.99979 0.94835 1.01944 1.17377 0.89843 0.92711 0.88258 1.19535 0.97798 0.95768 1.36137 0.90355 1.25898 0.98379 0.97007 0.92892 1.69816 1.17713 1.23271 1.31164 0.86287 0.79744 0.81896 0.78637 1.19269 1.20331 1.18636 1.20739 0.94627 0.97362 1.13252 0.92246 0.92031 0.92263 0.90224 0.92297 0.92271 0.92206 0.90937 0.90912 0.75040 0.75134 0.88096 0.88828 0.86148 0.90829 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.19 37.16 0.34 -0.45 16 2 C -0.11 -0.73 2.96 -90.62 -0.27 -1.00 16 3 C -0.15 -1.02 9.07 37.16 0.34 -0.68 16 4 C 0.12 1.10 5.06 -4.04 -0.02 1.08 16 5 N -0.70 -8.09 5.28 -60.76 -0.32 -8.42 16 6 C 0.51 7.67 7.89 -11.62 -0.09 7.58 16 7 O -0.52 -8.72 16.48 5.49 0.09 -8.63 16 8 C 0.50 8.88 7.62 -11.63 -0.09 8.80 16 9 O -0.51 -10.03 14.20 5.48 0.08 -9.96 16 10 N -0.63 -12.01 5.32 -10.34 -0.05 -12.06 16 11 C 0.15 3.31 6.25 -83.82 -0.52 2.78 16 12 C -0.22 -5.25 8.66 -39.09 -0.34 -5.59 16 13 C -0.10 -2.28 10.01 -39.70 -0.40 -2.68 16 14 C -0.16 -4.21 8.69 -38.83 -0.34 -4.55 16 15 C 0.12 3.21 5.57 -106.85 -0.59 2.61 16 16 C -0.46 -12.12 9.05 -37.74 -0.34 -12.46 16 17 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 18 C 0.08 1.88 5.16 -17.35 -0.09 1.79 16 19 N -0.79 -20.28 10.94 55.55 0.61 -19.68 16 20 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.24 -5.79 9.70 -38.67 -0.38 -6.16 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 30 H 0.06 0.44 7.18 -51.93 -0.37 0.07 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.41 4.36 7.12 -40.82 -0.29 4.07 16 35 H 0.41 6.99 8.30 -40.82 -0.34 6.65 16 36 H 0.10 2.29 6.46 -52.49 -0.34 1.95 16 37 H 0.09 2.00 8.06 -52.48 -0.42 1.58 16 38 H 0.12 3.19 6.17 -52.48 -0.32 2.87 16 39 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 40 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -29.44 340.67 -7.73 -37.17 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.44 Total: 11.88 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.79 Total: -8.92 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.23 Total: -40.15 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.58 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.44 -7.73 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453558419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.218 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds