Wall clock time and date at job start Tue Mar 31 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47382 * 2 1 4 4 C 1.53004 * 109.46922 * 119.99792 * 2 1 3 5 5 N 1.46496 * 109.46980 * 174.99830 * 4 2 1 6 6 C 1.34787 * 119.99915 * 180.02562 * 5 4 2 7 7 O 1.21360 * 119.99648 * 0.02562 * 6 5 4 8 8 C 1.49357 * 119.99655 * 180.02562 * 6 5 4 9 9 O 1.21367 * 120.00130 * 0.02562 * 8 6 5 10 10 N 1.34780 * 119.99366 * 180.02562 * 8 6 5 11 11 C 1.39743 * 119.99714 * 185.11396 * 10 8 6 12 12 C 1.39344 * 119.95114 * 34.20000 * 11 10 8 13 13 C 1.38468 * 120.41849 * 179.97438 * 12 11 10 14 14 C 1.37693 * 120.33083 * 0.28100 * 13 12 11 15 15 C 1.40744 * 119.89527 * 359.49464 * 14 13 12 16 16 C 1.41413 * 120.20765 * 180.24943 * 15 14 13 17 17 H 1.07999 * 120.00217 * 205.30599 * 16 15 14 18 18 C 1.39933 * 119.99910 * 25.31228 * 16 15 14 19 19 N 1.30826 * 120.00058 * 16.69518 * 18 16 15 20 20 Si 1.86802 * 120.00125 * 196.69109 * 18 16 15 21 21 H 1.48501 * 109.47181 * 89.99670 * 20 18 16 22 22 H 1.48496 * 109.47457 * 210.00328 * 20 18 16 23 23 H 1.48510 * 109.46950 * 330.00156 * 20 18 16 24 24 C 1.38304 * 119.95238 * 214.22580 * 11 10 8 25 25 H 1.09006 * 109.46853 * 300.00170 * 1 2 3 26 26 H 1.08994 * 109.46947 * 59.99754 * 1 2 3 27 27 H 1.08996 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47500 * 239.99867 * 2 1 3 29 29 H 1.09008 * 109.47141 * 59.99554 * 3 2 1 30 30 H 1.08998 * 109.47127 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47083 * 300.00438 * 3 2 1 32 32 H 1.09000 * 109.47116 * 55.00011 * 4 2 1 33 33 H 1.08997 * 109.47111 * 295.00207 * 4 2 1 34 34 H 0.96993 * 120.00253 * 0.02562 * 5 4 2 35 35 H 0.96996 * 120.00056 * 5.11378 * 10 8 6 36 36 H 1.07990 * 119.79277 * 0.02562 * 12 11 10 37 37 H 1.08007 * 119.83639 * 179.97438 * 13 12 11 38 38 H 1.08009 * 120.05223 * 179.73911 * 14 13 12 39 39 H 0.97001 * 120.00187 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.15967 * 359.94905 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1909 7 8 3.5693 -1.8853 3.1398 8 6 5.6615 -1.5359 2.1313 9 8 6.2652 -1.0794 1.1824 10 7 6.3344 -2.1392 3.1312 11 6 7.7318 -2.1453 3.1289 12 6 8.4314 -1.0528 2.6204 13 6 9.8161 -1.0484 2.6139 14 6 10.5172 -2.1269 3.1050 15 6 9.8243 -3.2356 3.6262 16 6 10.5377 -4.3445 4.1371 17 1 10.0775 -5.3214 4.1542 18 6 11.8401 -4.1762 4.6205 19 7 12.2816 -2.9785 4.9074 20 14 12.9481 -5.6614 4.8564 21 1 13.7104 -5.9138 3.6072 22 1 13.8952 -5.4007 5.9701 23 1 12.1196 -6.8508 5.1795 24 6 8.4184 -3.2359 3.6309 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9824 -0.4623 0.4320 35 1 5.8487 -2.5691 3.8524 36 1 7.8904 -0.2038 2.2297 37 1 10.3489 -0.1968 2.2171 38 1 11.5972 -2.1205 3.0938 39 1 13.1845 -2.8618 5.2421 40 1 7.8771 -4.0831 4.0257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453558419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:48 Heat of formation + Delta-G solvation = -82.718237 kcal Electronic energy + Delta-G solvation = -21977.041147 eV Core-core repulsion = 18562.183822 eV Total energy + Delta-G solvation = -3414.857325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99874 -40.28096 -38.91694 -37.81659 -36.33957 -34.97438 -34.23583 -31.80875 -30.38401 -28.12605 -28.00184 -27.20941 -25.23062 -22.99824 -22.58377 -21.65275 -21.06115 -19.72948 -19.27655 -17.91603 -17.39843 -17.23327 -16.73659 -16.66798 -16.49193 -16.02954 -15.36238 -15.26772 -14.79586 -14.67712 -14.44244 -14.10235 -13.94628 -13.57902 -13.32183 -13.26472 -12.95157 -12.85742 -12.83819 -12.54675 -12.24288 -12.06525 -11.91010 -11.88401 -11.66296 -11.60706 -11.22069 -10.90862 -10.65879 -10.35964 -9.44948 -8.84238 -8.64286 -6.38062 0.10771 0.94370 1.01039 1.28754 1.40844 1.53860 1.54124 2.09170 2.22194 2.61295 2.73399 3.34397 3.69726 3.72182 3.92282 4.09842 4.38708 4.55336 4.59876 4.64753 4.70529 4.82529 4.88932 4.96642 4.99187 5.04153 5.04590 5.08231 5.11229 5.22601 5.30094 5.39751 5.43536 5.63501 5.70840 5.90405 6.05316 6.06976 6.22897 6.42811 6.62553 6.69350 6.85984 6.91485 7.00494 8.33297 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044165 B = 0.002711 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.829235 B =10324.659096 C =10722.236310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.153 4.153 4 C 0.117 3.883 5 N -0.685 5.685 6 C 0.518 3.482 7 O -0.540 6.540 8 C 0.499 3.501 9 O -0.525 6.525 10 N -0.631 5.631 11 C 0.154 3.846 12 C -0.233 4.233 13 C -0.094 4.094 14 C -0.189 4.189 15 C 0.094 3.906 16 C -0.495 4.495 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.823 5.823 20 Si 0.984 3.016 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.252 4.252 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.419 0.581 35 H 0.422 0.578 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.289 0.711 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.395 5.176 -7.592 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.210 4.210 4 C -0.005 4.005 5 N -0.338 5.338 6 C 0.298 3.702 7 O -0.417 6.417 8 C 0.281 3.719 9 O -0.401 6.401 10 N -0.277 5.277 11 C 0.062 3.938 12 C -0.253 4.253 13 C -0.113 4.113 14 C -0.208 4.208 15 C 0.091 3.909 16 C -0.524 4.524 17 H 0.097 0.903 18 C -0.180 4.180 19 N -0.448 5.448 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.182 1.182 24 C -0.274 4.274 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.257 0.743 35 H 0.260 0.740 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.287 5.342 -7.494 19.584 hybrid contribution 0.756 -0.517 0.338 0.976 sum -16.531 4.826 -7.156 18.648 Atomic orbital electron populations 1.21755 0.92619 1.02684 1.02973 1.21358 0.97666 0.96555 0.96553 1.21918 1.00874 0.95426 1.02828 1.21813 0.76907 1.01736 1.00051 1.45808 1.09043 1.56423 1.22506 1.19714 0.87054 0.79722 0.83734 1.90754 1.69639 1.47773 1.33573 1.20496 0.89051 0.79584 0.82775 1.90756 1.70153 1.46560 1.32619 1.43128 1.05234 1.54011 1.25356 1.17460 0.80743 0.94809 1.00801 1.20461 0.93928 0.98702 1.12256 1.20823 0.93610 0.97888 0.99014 1.21374 0.99493 0.95971 1.03996 1.17746 0.91046 0.93281 0.88786 1.19801 0.99262 0.95822 1.37546 0.90344 1.26764 0.99209 1.00041 0.91959 1.69866 1.18482 1.25267 1.31228 0.85168 0.77575 0.77909 0.78840 1.18745 1.19242 1.18198 1.20882 0.94241 0.98319 1.13921 0.92107 0.90992 0.91976 0.89666 0.92391 0.93192 0.91032 0.90717 0.90935 0.74317 0.73953 0.87239 0.86633 0.87480 0.89994 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.19 71.98 0.66 -0.55 16 2 C -0.10 -1.13 2.96 -10.79 -0.03 -1.16 16 3 C -0.15 -1.73 9.07 71.98 0.65 -1.08 16 4 C 0.12 1.90 5.06 86.38 0.44 2.34 16 5 N -0.68 -14.57 5.28 -464.50 -2.45 -17.02 16 6 C 0.52 14.88 7.89 87.24 0.69 15.57 16 7 O -0.54 -17.29 16.48 -3.28 -0.05 -17.35 16 8 C 0.50 17.36 7.62 87.24 0.66 18.02 16 9 O -0.52 -20.31 14.20 -3.30 -0.05 -20.35 16 10 N -0.63 -23.67 5.32 -304.98 -1.62 -25.29 16 11 C 0.15 7.04 6.25 38.16 0.24 7.28 16 12 C -0.23 -10.87 8.66 22.59 0.20 -10.68 16 13 C -0.09 -4.55 10.01 22.20 0.22 -4.33 16 14 C -0.19 -10.04 8.69 22.75 0.20 -9.84 16 15 C 0.09 5.12 5.57 -21.31 -0.12 5.00 16 16 C -0.50 -26.48 9.05 23.46 0.21 -26.27 16 17 H 0.08 4.03 7.90 -2.91 -0.02 4.01 16 18 C 0.04 1.77 5.16 85.25 0.44 2.21 16 19 N -0.82 -42.63 10.94 21.82 0.24 -42.39 16 20 Si 0.98 37.82 29.59 68.60 2.03 39.85 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 24 C -0.25 -12.42 9.70 22.86 0.22 -12.20 16 25 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.05 0.65 7.18 -2.39 -0.02 0.64 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.42 8.10 7.12 -92.71 -0.66 7.44 16 35 H 0.42 14.07 8.30 -92.71 -0.77 13.30 16 36 H 0.11 4.89 6.46 -2.92 -0.02 4.87 16 37 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 38 H 0.11 5.89 6.17 -2.91 -0.02 5.87 16 39 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 40 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -63.09 340.67 2.42 -60.67 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.36 Total: 37.57 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 4.68 Total: -15.69 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -3.83 Total: -84.70 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.10 Total: -37.70 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -63.09 2.42 -60.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453558419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.047 kcal (2) G-P(sol) polarization free energy of solvation -63.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds