Wall clock time and date at job start Tue Mar 31 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 N 1.46497 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.46508 * 119.99760 * 270.00319 * 4 3 2 6 6 C 1.34769 * 120.00256 * 89.99545 * 4 3 2 7 7 O 1.21358 * 119.99922 * 355.26849 * 6 4 3 8 8 C 1.49362 * 120.00352 * 175.26245 * 6 4 3 9 9 O 1.21379 * 119.99566 * 354.32825 * 8 6 4 10 10 N 1.34768 * 120.00174 * 174.32443 * 8 6 4 11 11 C 1.39741 * 119.99908 * 184.93866 * 10 8 6 12 12 C 1.39343 * 119.95617 * 323.92149 * 11 10 8 13 13 C 1.38472 * 120.42471 * 179.97438 * 12 11 10 14 14 C 1.37685 * 120.32720 * 0.28263 * 13 12 11 15 15 C 1.40746 * 119.89913 * 359.48666 * 14 13 12 16 16 C 1.41412 * 120.21207 * 180.25450 * 15 14 13 17 17 H 1.08006 * 120.00183 * 329.67763 * 16 15 14 18 18 C 1.39931 * 120.00126 * 149.66513 * 16 15 14 19 19 N 1.30834 * 119.99971 * 169.57043 * 18 16 15 20 20 Si 1.86794 * 120.00032 * 349.57786 * 18 16 15 21 21 H 1.48494 * 109.47538 * 91.40945 * 20 18 16 22 22 H 1.48501 * 109.47034 * 211.40888 * 20 18 16 23 23 H 1.48499 * 109.47109 * 331.40738 * 20 18 16 24 24 C 1.38303 * 119.95133 * 143.94487 * 11 10 8 25 25 H 1.09002 * 109.46729 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47250 * 59.99551 * 1 2 3 27 27 H 1.08998 * 109.47244 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46729 * 240.00036 * 2 1 3 29 29 H 1.09004 * 109.47250 * 120.00449 * 2 1 3 30 30 H 1.09002 * 109.47166 * 60.00303 * 3 2 1 31 31 H 1.09004 * 109.47302 * 300.00417 * 3 2 1 32 32 H 1.09001 * 109.46433 * 242.02948 * 5 4 3 33 33 H 1.09002 * 109.46920 * 2.03248 * 5 4 3 34 34 H 1.08999 * 109.47096 * 122.03057 * 5 4 3 35 35 H 0.97004 * 120.00167 * 4.94458 * 10 8 6 36 36 H 1.07998 * 119.78319 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.83367 * 179.97438 * 13 12 11 38 38 H 1.08004 * 120.04929 * 179.74874 * 14 13 12 39 39 H 0.96996 * 120.00237 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.16604 * 359.95765 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4422 1.2679 6 6 4.1784 1.4426 -1.1680 7 8 3.5743 1.3560 -2.2170 8 6 5.6682 1.5494 -1.1709 9 8 6.2650 1.7395 -0.1311 10 7 6.3498 1.4347 -2.3278 11 6 7.7472 1.4312 -2.3180 12 6 8.4387 2.2316 -1.4109 13 6 9.8233 2.2352 -1.3924 14 6 10.5324 1.4517 -2.2750 15 6 9.8479 0.6343 -3.1938 16 6 10.5696 -0.1771 -4.0996 17 1 11.5410 0.1381 -4.4512 18 6 10.0254 -1.3886 -4.5403 19 7 10.5893 -2.0392 -5.5253 20 14 8.4936 -2.0769 -3.7222 21 1 7.2882 -1.5938 -4.4423 22 1 8.5340 -3.5607 -3.7646 23 1 8.4409 -1.6233 -2.3091 24 6 8.4419 0.6337 -3.2092 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 4.8371 2.3499 1.3414 33 1 3.5306 1.4056 2.0963 34 1 4.8918 0.5710 1.3096 35 1 5.8705 1.3547 -3.1673 36 1 7.8912 2.8524 -0.7172 37 1 10.3496 2.8596 -0.6855 38 1 11.6123 1.4611 -2.2593 39 1 10.2119 -2.8788 -5.8311 40 1 7.9072 0.0127 -3.9125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453618748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:02 Heat of formation + Delta-G solvation = -43.981746 kcal Electronic energy + Delta-G solvation = -22836.166245 eV Core-core repulsion = 19422.988660 eV Total energy + Delta-G solvation = -3413.177585 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86654 -39.04316 -37.44543 -36.51036 -34.56509 -33.44930 -33.25989 -30.43281 -29.05239 -27.70303 -26.75103 -25.21211 -23.92620 -21.97100 -21.72141 -20.44792 -19.57643 -17.92128 -17.60201 -16.89340 -16.25064 -15.99773 -15.52950 -15.33428 -14.85684 -14.58503 -14.37632 -14.07119 -13.58318 -13.24451 -13.08295 -13.06129 -12.70330 -12.61527 -12.34912 -12.17715 -12.05740 -11.63625 -11.62011 -11.34545 -10.98185 -10.93050 -10.81013 -10.56286 -10.15843 -9.91288 -9.47388 -9.19322 -9.11447 -8.93741 -7.67423 -7.31130 -6.93731 -4.54367 1.39995 2.29561 2.53480 2.61062 3.07233 3.17347 3.29978 3.37190 3.56148 3.95543 4.44489 4.49936 4.66123 4.67081 4.88305 5.07350 5.11336 5.34323 5.35815 5.41073 5.56319 5.71793 5.77899 5.81893 5.93173 5.94976 6.20209 6.23659 6.36549 6.46072 6.58341 6.66537 6.88284 7.05118 7.23825 7.32147 7.56124 7.63978 7.75358 7.89281 8.02346 8.21119 8.34602 8.58811 8.76622 10.08945 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.004357 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.783035 B = 6424.925802 C = 7397.128147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.114 3.886 4 N -0.592 5.592 5 C 0.085 3.915 6 C 0.508 3.492 7 O -0.521 6.521 8 C 0.500 3.500 9 O -0.499 6.499 10 N -0.637 5.637 11 C 0.162 3.838 12 C -0.225 4.225 13 C -0.076 4.076 14 C -0.206 4.206 15 C 0.104 3.896 16 C -0.445 4.445 17 H 0.093 0.907 18 C 0.083 3.917 19 N -0.814 5.814 20 Si 0.912 3.088 21 H -0.272 1.272 22 H -0.293 1.293 23 H -0.243 1.243 24 C -0.254 4.254 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.414 0.586 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.285 0.715 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.128 4.241 10.943 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C -0.008 4.008 4 N -0.326 5.326 5 C -0.057 4.057 6 C 0.291 3.709 7 O -0.396 6.396 8 C 0.281 3.719 9 O -0.374 6.374 10 N -0.282 5.282 11 C 0.071 3.929 12 C -0.246 4.246 13 C -0.095 4.095 14 C -0.226 4.226 15 C 0.100 3.900 16 C -0.474 4.474 17 H 0.111 0.889 18 C -0.135 4.135 19 N -0.439 5.439 20 Si 0.740 3.260 21 H -0.199 1.199 22 H -0.221 1.221 23 H -0.167 1.167 24 C -0.275 4.275 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.250 0.750 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.989 4.108 10.954 19.812 hybrid contribution -0.894 -0.584 -0.205 1.088 sum -16.883 3.524 10.748 20.322 Atomic orbital electron populations 1.21683 0.94901 1.02077 1.01929 1.21911 0.96334 0.96916 1.02933 1.21694 0.78041 0.97541 1.03548 1.47720 1.06947 1.71352 1.06566 1.22050 0.96184 1.04321 0.83140 1.20287 0.88586 0.77906 0.84152 1.90747 1.69870 1.48031 1.30984 1.19978 0.87907 0.79343 0.84688 1.90749 1.69659 1.45866 1.31087 1.43210 1.06450 1.69318 1.09268 1.17465 0.79213 0.97492 0.98775 1.20466 0.93894 1.05737 1.04486 1.20568 0.93345 0.97830 0.97767 1.21114 0.98435 1.03964 0.99055 1.17519 0.90271 0.91649 0.90560 1.19482 1.05075 1.02377 1.20420 0.88879 1.26120 0.97749 0.96778 0.92888 1.69636 1.38853 1.14750 1.20671 0.86347 0.80670 0.76315 0.82702 1.19875 1.22088 1.16657 1.20816 0.94928 1.06199 1.05607 0.92620 0.92391 0.92366 0.91267 0.91682 0.89965 0.89624 0.90180 0.91286 0.91185 0.74951 0.86929 0.88154 0.87824 0.90440 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.14 -1.27 6.26 -26.73 -0.17 -1.44 16 3 C 0.11 1.07 5.33 -4.04 -0.02 1.05 16 4 N -0.59 -7.18 2.87 -182.11 -0.52 -7.70 16 5 C 0.09 0.89 9.07 59.85 0.54 1.44 16 6 C 0.51 7.84 7.72 -11.63 -0.09 7.75 16 7 O -0.52 -8.82 16.11 5.49 0.09 -8.73 16 8 C 0.50 8.81 7.62 -11.63 -0.09 8.72 16 9 O -0.50 -9.24 10.80 5.47 0.06 -9.18 16 10 N -0.64 -12.11 5.31 -10.34 -0.05 -12.17 16 11 C 0.16 3.57 6.27 -83.82 -0.53 3.05 16 12 C -0.22 -4.85 8.70 -39.08 -0.34 -5.19 16 13 C -0.08 -1.61 10.01 -39.70 -0.40 -2.00 16 14 C -0.21 -4.73 9.79 -38.84 -0.38 -5.11 16 15 C 0.10 2.61 5.17 -106.85 -0.55 2.05 16 16 C -0.44 -11.93 9.62 -37.74 -0.36 -12.30 16 17 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 18 C 0.08 2.18 5.48 -17.34 -0.10 2.08 16 19 N -0.81 -21.80 13.93 55.55 0.77 -21.03 16 20 Si 0.91 21.27 24.36 -169.99 -4.14 17.13 16 21 H -0.27 -6.14 6.65 56.52 0.38 -5.77 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.24 -5.89 6.58 56.52 0.37 -5.52 16 24 C -0.25 -6.10 6.86 -38.67 -0.27 -6.36 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.56 7.94 -51.93 -0.41 0.15 16 31 H 0.09 0.88 7.49 -51.93 -0.39 0.49 16 32 H 0.08 0.92 6.94 -51.93 -0.36 0.56 16 33 H 0.07 0.50 7.81 -51.93 -0.41 0.09 16 34 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 35 H 0.41 7.18 8.30 -40.82 -0.34 6.84 16 36 H 0.11 2.33 6.27 -52.49 -0.33 2.00 16 37 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 38 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 39 H 0.29 6.95 8.30 -40.82 -0.34 6.61 16 40 H 0.10 2.49 4.16 -52.49 -0.22 2.27 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -29.39 331.19 -6.60 -35.99 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.42 Total: 7.63 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.38 Total: -6.93 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.20 Total: -40.90 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.15 Total: -17.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.14 Total: 17.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.39 -6.60 -35.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453618748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.997 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds