Wall clock time and date at job start Tue Mar 31 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 N 1.46497 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.46508 * 119.99760 * 270.00319 * 4 3 2 6 6 C 1.34769 * 120.00256 * 89.99545 * 4 3 2 7 7 O 1.21358 * 119.99922 * 355.26849 * 6 4 3 8 8 C 1.49362 * 120.00352 * 175.26245 * 6 4 3 9 9 O 1.21379 * 119.99566 * 354.32825 * 8 6 4 10 10 N 1.34768 * 120.00174 * 174.32443 * 8 6 4 11 11 C 1.39741 * 119.99908 * 184.93866 * 10 8 6 12 12 C 1.39343 * 119.95617 * 323.92149 * 11 10 8 13 13 C 1.38472 * 120.42471 * 179.97438 * 12 11 10 14 14 C 1.37685 * 120.32720 * 0.28263 * 13 12 11 15 15 C 1.40746 * 119.89913 * 359.48666 * 14 13 12 16 16 C 1.41412 * 120.21207 * 180.25450 * 15 14 13 17 17 H 1.08006 * 120.00183 * 329.67763 * 16 15 14 18 18 C 1.39931 * 120.00126 * 149.66513 * 16 15 14 19 19 N 1.30834 * 119.99971 * 169.57043 * 18 16 15 20 20 Si 1.86794 * 120.00032 * 349.57786 * 18 16 15 21 21 H 1.48494 * 109.47538 * 91.40945 * 20 18 16 22 22 H 1.48501 * 109.47034 * 211.40888 * 20 18 16 23 23 H 1.48499 * 109.47109 * 331.40738 * 20 18 16 24 24 C 1.38303 * 119.95133 * 143.94487 * 11 10 8 25 25 H 1.09002 * 109.46729 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47250 * 59.99551 * 1 2 3 27 27 H 1.08998 * 109.47244 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46729 * 240.00036 * 2 1 3 29 29 H 1.09004 * 109.47250 * 120.00449 * 2 1 3 30 30 H 1.09002 * 109.47166 * 60.00303 * 3 2 1 31 31 H 1.09004 * 109.47302 * 300.00417 * 3 2 1 32 32 H 1.09001 * 109.46433 * 242.02948 * 5 4 3 33 33 H 1.09002 * 109.46920 * 2.03248 * 5 4 3 34 34 H 1.08999 * 109.47096 * 122.03057 * 5 4 3 35 35 H 0.97004 * 120.00167 * 4.94458 * 10 8 6 36 36 H 1.07998 * 119.78319 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.83367 * 179.97438 * 13 12 11 38 38 H 1.08004 * 120.04929 * 179.74874 * 14 13 12 39 39 H 0.96996 * 120.00237 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.16604 * 359.95765 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4422 1.2679 6 6 4.1784 1.4426 -1.1680 7 8 3.5743 1.3560 -2.2170 8 6 5.6682 1.5494 -1.1709 9 8 6.2650 1.7395 -0.1311 10 7 6.3498 1.4347 -2.3278 11 6 7.7472 1.4312 -2.3180 12 6 8.4387 2.2316 -1.4109 13 6 9.8233 2.2352 -1.3924 14 6 10.5324 1.4517 -2.2750 15 6 9.8479 0.6343 -3.1938 16 6 10.5696 -0.1771 -4.0996 17 1 11.5410 0.1381 -4.4512 18 6 10.0254 -1.3886 -4.5403 19 7 10.5893 -2.0392 -5.5253 20 14 8.4936 -2.0769 -3.7222 21 1 7.2882 -1.5938 -4.4423 22 1 8.5340 -3.5607 -3.7646 23 1 8.4409 -1.6233 -2.3091 24 6 8.4419 0.6337 -3.2092 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 4.8371 2.3499 1.3414 33 1 3.5306 1.4056 2.0963 34 1 4.8918 0.5710 1.3096 35 1 5.8705 1.3547 -3.1673 36 1 7.8912 2.8524 -0.7172 37 1 10.3496 2.8596 -0.6855 38 1 11.6123 1.4611 -2.2593 39 1 10.2119 -2.8788 -5.8311 40 1 7.9072 0.0127 -3.9125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453618748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:01 Heat of formation + Delta-G solvation = -62.558078 kcal Electronic energy + Delta-G solvation = -22836.971775 eV Core-core repulsion = 19422.988660 eV Total energy + Delta-G solvation = -3413.983115 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.18497 -40.44660 -39.07504 -37.57146 -36.11930 -35.20231 -34.17002 -32.30501 -30.72251 -28.48503 -27.84196 -27.11887 -25.10819 -23.50926 -22.90266 -21.87613 -21.00227 -19.41960 -19.16886 -18.16346 -17.85940 -17.26970 -17.00192 -16.60595 -16.40274 -15.81394 -15.75926 -15.25839 -15.05392 -14.86252 -14.43969 -14.25450 -14.02876 -13.92224 -13.57492 -13.37980 -13.04296 -12.89821 -12.73882 -12.70298 -12.52195 -12.34253 -12.25346 -11.97252 -11.77127 -11.65319 -11.15665 -11.05852 -10.52827 -9.92731 -9.52742 -9.04969 -8.90568 -6.56268 0.03760 0.74429 0.77870 1.16346 1.20899 1.33683 1.41684 1.99904 2.05213 2.36032 2.59433 3.14030 3.45732 3.93858 3.98310 4.17133 4.20001 4.40499 4.47458 4.49776 4.63321 4.63824 4.66452 4.70558 4.84713 4.87513 4.89580 5.00510 5.12970 5.15481 5.24532 5.25879 5.41371 5.50682 5.56938 5.79126 5.84238 5.86526 6.11838 6.20446 6.36445 6.53370 6.66737 6.78390 6.83063 8.17621 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.004357 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.783035 B = 6424.925802 C = 7397.128147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.109 3.891 4 N -0.580 5.580 5 C 0.082 3.918 6 C 0.508 3.492 7 O -0.542 6.542 8 C 0.499 3.501 9 O -0.507 6.507 10 N -0.642 5.642 11 C 0.162 3.838 12 C -0.217 4.217 13 C -0.069 4.069 14 C -0.216 4.216 15 C 0.086 3.914 16 C -0.476 4.476 17 H 0.065 0.935 18 C 0.050 3.950 19 N -0.852 5.852 20 Si 0.961 3.039 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.257 1.257 24 C -0.265 4.265 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.421 0.579 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.293 0.707 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.688 5.184 13.672 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C -0.011 4.011 4 N -0.312 5.312 5 C -0.059 4.059 6 C 0.290 3.710 7 O -0.420 6.420 8 C 0.282 3.718 9 O -0.382 6.382 10 N -0.288 5.288 11 C 0.070 3.930 12 C -0.238 4.238 13 C -0.087 4.087 14 C -0.236 4.236 15 C 0.082 3.918 16 C -0.506 4.506 17 H 0.083 0.917 18 C -0.164 4.164 19 N -0.479 5.479 20 Si 0.787 3.213 21 H -0.188 1.188 22 H -0.207 1.207 23 H -0.182 1.182 24 C -0.287 4.287 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.074 0.926 35 H 0.258 0.742 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.579 5.058 13.711 23.638 hybrid contribution -0.164 -0.702 -0.862 1.124 sum -18.743 4.356 12.849 23.138 Atomic orbital electron populations 1.21659 0.93245 1.02540 1.02744 1.21872 0.97730 0.96255 1.01901 1.21985 0.76015 0.98181 1.04953 1.47892 1.08200 1.69102 1.05992 1.22164 0.97078 1.03220 0.83439 1.19890 0.87365 0.78699 0.85075 1.90746 1.69706 1.49661 1.31896 1.20438 0.89068 0.78355 0.83950 1.90734 1.70304 1.45924 1.31208 1.43215 1.05370 1.69882 1.10350 1.17535 0.80795 0.96637 0.98073 1.20798 0.94323 1.04801 1.03866 1.20949 0.93313 0.97100 0.97345 1.21325 0.99189 1.03973 0.99125 1.17676 0.91044 0.92103 0.90930 1.19476 1.04668 1.03860 1.22592 0.91691 1.26668 0.99844 0.96713 0.93185 1.69662 1.40499 1.15744 1.22035 0.85586 0.78438 0.76381 0.80913 1.18800 1.20729 1.18169 1.20847 0.94631 1.06870 1.06310 0.90639 0.92736 0.92144 0.94189 0.90834 0.86214 0.90551 0.90941 0.87155 0.92563 0.74193 0.85524 0.84328 0.86981 0.89640 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.91 71.98 0.71 -0.89 16 2 C -0.14 -2.14 6.26 30.59 0.19 -1.95 16 3 C 0.11 1.71 5.33 86.38 0.46 2.17 16 4 N -0.58 -12.50 2.87 -848.44 -2.44 -14.94 16 5 C 0.08 1.46 9.07 127.77 1.16 2.62 16 6 C 0.51 14.85 7.72 87.24 0.67 15.52 16 7 O -0.54 -17.82 16.11 -3.27 -0.05 -17.88 16 8 C 0.50 16.79 7.62 87.24 0.66 17.45 16 9 O -0.51 -17.66 10.80 -3.34 -0.04 -17.70 16 10 N -0.64 -23.64 5.31 -304.98 -1.62 -25.26 16 11 C 0.16 6.95 6.27 38.16 0.24 7.19 16 12 C -0.22 -8.84 8.70 22.59 0.20 -8.64 16 13 C -0.07 -2.72 10.01 22.19 0.22 -2.50 16 14 C -0.22 -9.81 9.79 22.75 0.22 -9.59 16 15 C 0.09 4.36 5.17 -21.31 -0.11 4.25 16 16 C -0.48 -26.60 9.62 23.46 0.23 -26.38 16 17 H 0.06 3.86 8.06 -2.91 -0.02 3.83 16 18 C 0.05 2.71 5.48 85.25 0.47 3.17 16 19 N -0.85 -47.18 13.93 21.82 0.30 -46.87 16 20 Si 0.96 44.42 24.36 68.60 1.67 46.09 16 21 H -0.26 -11.53 6.65 99.48 0.66 -10.87 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.26 -12.36 6.58 99.48 0.66 -11.70 16 24 C -0.27 -12.69 6.86 22.86 0.16 -12.53 16 25 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.12 1.03 7.94 -2.39 -0.02 1.01 16 31 H 0.08 1.39 7.49 -2.39 -0.02 1.37 16 32 H 0.07 1.44 6.94 -2.39 -0.02 1.42 16 33 H 0.11 1.06 7.81 -2.39 -0.02 1.05 16 34 H 0.06 1.19 7.56 -2.39 -0.02 1.17 16 35 H 0.42 14.29 8.30 -92.71 -0.77 13.52 16 36 H 0.13 4.84 6.27 -2.91 -0.02 4.82 16 37 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 40 H 0.10 4.82 4.16 -2.91 -0.01 4.81 16 Total: -1.00 -64.54 331.19 3.51 -61.03 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.20 Total: 25.63 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 5.48 Total: -10.11 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -3.75 Total: -87.07 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.09 Total: -35.58 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.67 Total: 46.09 kcal Total: -64.54 3.51 -61.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453618748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.524 kcal (2) G-P(sol) polarization free energy of solvation -64.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds