Wall clock time and date at job start Tue Mar 31 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47297 * 2 1 4 4 C 1.52997 * 109.47028 * 239.99918 * 2 1 3 5 5 N 1.46496 * 109.47332 * 120.00062 * 2 1 3 6 6 C 1.34787 * 119.99915 * 59.99760 * 5 2 1 7 7 O 1.21360 * 119.99648 * 0.02562 * 6 5 2 8 8 C 1.49357 * 119.99655 * 180.02562 * 6 5 2 9 9 O 1.21367 * 120.00130 * 0.02562 * 8 6 5 10 10 N 1.34780 * 119.99366 * 180.02562 * 8 6 5 11 11 C 1.39743 * 119.99714 * 185.11396 * 10 8 6 12 12 C 1.39344 * 119.95114 * 34.20000 * 11 10 8 13 13 C 1.38468 * 120.41849 * 179.97438 * 12 11 10 14 14 C 1.37693 * 120.33083 * 0.28100 * 13 12 11 15 15 C 1.40744 * 119.89527 * 359.49464 * 14 13 12 16 16 C 1.41413 * 120.20765 * 180.24943 * 15 14 13 17 17 H 1.07999 * 120.00217 * 205.30599 * 16 15 14 18 18 C 1.39933 * 119.99910 * 25.31228 * 16 15 14 19 19 N 1.30826 * 120.00058 * 16.69518 * 18 16 15 20 20 Si 1.86802 * 120.00125 * 196.69109 * 18 16 15 21 21 H 1.48501 * 109.47181 * 89.99670 * 20 18 16 22 22 H 1.48496 * 109.47457 * 210.00328 * 20 18 16 23 23 H 1.48510 * 109.46950 * 330.00156 * 20 18 16 24 24 C 1.38304 * 119.95238 * 214.22580 * 11 10 8 25 25 H 1.09000 * 109.46959 * 300.00000 * 1 2 3 26 26 H 1.09001 * 109.47415 * 60.00012 * 1 2 3 27 27 H 1.09004 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47111 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46878 * 300.00317 * 3 2 1 30 30 H 1.08999 * 109.46598 * 59.99531 * 3 2 1 31 31 H 1.09002 * 109.47740 * 300.00104 * 4 2 1 32 32 H 1.09000 * 109.47353 * 60.00166 * 4 2 1 33 33 H 1.09004 * 109.47381 * 179.97438 * 4 2 1 34 34 H 0.96993 * 120.00253 * 240.00117 * 5 2 1 35 35 H 0.96996 * 120.00056 * 5.11378 * 10 8 6 36 36 H 1.07990 * 119.79277 * 0.02562 * 12 11 10 37 37 H 1.08007 * 119.83639 * 179.97438 * 13 12 11 38 38 H 1.08009 * 120.05223 * 179.73911 * 14 13 12 39 39 H 0.97001 * 120.00187 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.15967 * 359.94905 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1961 6 6 1.6927 -1.9810 1.4094 7 8 0.9953 -2.5709 0.6103 8 6 2.1902 -2.6849 2.6292 9 8 2.8872 -2.0948 3.4285 10 7 1.8649 -3.9754 2.8422 11 6 2.2397 -4.6030 4.0332 12 6 2.2752 -3.8759 5.2214 13 6 2.6446 -4.4881 6.4071 14 6 2.9867 -5.8217 6.4240 15 6 2.9509 -6.5702 5.2326 16 6 3.2958 -7.9416 5.2433 17 1 3.6642 -8.4128 4.3440 18 6 3.1597 -8.6882 6.4190 19 7 2.4247 -8.2335 7.4011 20 14 4.0273 -10.3340 6.5860 21 1 5.3768 -10.1253 7.1694 22 1 3.2360 -11.2228 7.4743 23 1 4.1587 -10.9625 5.2469 24 6 2.5753 -5.9447 4.0308 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7490 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 2.5760 -0.2192 1.8346 35 1 1.3708 -4.4685 2.1688 36 1 2.0122 -2.8285 5.2176 37 1 2.6693 -3.9155 7.3226 38 1 3.2782 -6.2937 7.3507 39 1 2.3307 -8.7508 8.2163 40 1 2.5477 -6.5093 3.1105 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453694849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:52 Heat of formation + Delta-G solvation = -55.953391 kcal Electronic energy + Delta-G solvation = -22451.865336 eV Core-core repulsion = 19038.168622 eV Total energy + Delta-G solvation = -3413.696714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79500 -39.13933 -37.21953 -36.70968 -34.59478 -33.11036 -32.08308 -29.88777 -28.54409 -27.67112 -27.47447 -25.34631 -24.80797 -21.60185 -21.01402 -20.01935 -19.66335 -18.38873 -17.56245 -16.37933 -15.77787 -15.70592 -15.51129 -14.99008 -14.69717 -14.45826 -14.07740 -13.80993 -13.77544 -13.04047 -12.94734 -12.74553 -12.38632 -12.34064 -12.27045 -11.85604 -11.71898 -11.64116 -11.41303 -11.39069 -11.16765 -11.01232 -10.65918 -10.52602 -10.10272 -9.80160 -9.42283 -9.34316 -9.15976 -8.97576 -7.51727 -6.99638 -6.77666 -4.40365 1.51498 2.48347 2.77500 2.86442 3.07069 3.10448 3.20022 3.54279 3.83135 3.92952 4.47051 4.61077 4.64047 4.72352 4.78400 5.24713 5.35454 5.45841 5.50839 5.57409 5.64458 5.70967 5.74804 6.03882 6.13547 6.22139 6.30836 6.44325 6.59521 6.84419 6.87909 6.99050 7.16537 7.20633 7.48138 7.55406 7.76852 7.95552 7.98798 8.06456 8.21966 8.38686 8.60538 8.85730 8.91190 10.17506 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039207 B = 0.002993 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.979754 B = 9352.098559 C = 9712.192263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.166 3.834 3 C -0.155 4.155 4 C -0.166 4.166 5 N -0.697 5.697 6 C 0.514 3.486 7 O -0.519 6.519 8 C 0.495 3.505 9 O -0.507 6.507 10 N -0.631 5.631 11 C 0.145 3.855 12 C -0.224 4.224 13 C -0.095 4.095 14 C -0.162 4.162 15 C 0.122 3.878 16 C -0.463 4.463 17 H 0.078 0.922 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.910 3.090 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.238 4.238 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.412 0.588 35 H 0.412 0.588 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.281 0.719 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 13.333 -11.264 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.081 3.919 3 C -0.213 4.213 4 C -0.224 4.224 5 N -0.352 5.352 6 C 0.295 3.705 7 O -0.394 6.394 8 C 0.276 3.724 9 O -0.382 6.382 10 N -0.276 5.276 11 C 0.054 3.946 12 C -0.245 4.245 13 C -0.115 4.115 14 C -0.182 4.182 15 C 0.119 3.881 16 C -0.493 4.493 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.420 5.420 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.260 4.260 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.248 0.752 35 H 0.248 0.752 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.818 13.295 -11.065 17.392 hybrid contribution 0.320 -0.737 0.134 0.815 sum -1.498 12.558 -10.931 16.716 Atomic orbital electron populations 1.22245 0.93900 1.04263 1.01963 1.20464 0.94718 0.91960 0.84775 1.22094 1.01871 0.94137 1.03203 1.22245 1.01198 1.02844 0.96085 1.45954 1.52675 1.11289 1.25240 1.20260 0.80874 0.82819 0.86536 1.90682 1.36654 1.66123 1.45991 1.20046 0.82047 0.83529 0.86745 1.90770 1.35642 1.65722 1.46072 1.43189 1.54136 1.10666 1.19635 1.17447 1.01400 0.92320 0.83463 1.20285 1.13926 0.98840 0.91409 1.20576 1.00038 0.95172 0.95668 1.21419 1.05029 0.92268 0.99483 1.17371 0.87672 0.92922 0.90174 1.19537 1.38943 0.94081 0.96724 0.90362 1.25894 0.93102 1.00098 0.95052 1.69817 1.28375 1.38346 1.05438 0.86290 0.80038 0.80975 0.79274 1.19272 1.20330 1.18634 1.20735 1.13232 0.92967 0.99050 0.92478 0.91634 0.90185 0.91685 0.90627 0.91693 0.90183 0.91634 0.92474 0.75186 0.75164 0.88113 0.88844 0.86160 0.90831 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 8.40 37.16 0.31 -1.27 16 2 C 0.17 1.55 1.06 -131.82 -0.14 1.41 16 3 C -0.16 -1.03 8.59 37.16 0.32 -0.71 16 4 C -0.17 -1.58 8.40 37.16 0.31 -1.27 16 5 N -0.70 -8.04 5.10 -48.06 -0.25 -8.28 16 6 C 0.51 7.54 7.31 -11.62 -0.08 7.45 16 7 O -0.52 -8.10 12.69 5.49 0.07 -8.03 16 8 C 0.50 8.79 7.62 -11.63 -0.09 8.70 16 9 O -0.51 -10.07 14.20 5.48 0.08 -9.99 16 10 N -0.63 -11.92 5.32 -10.34 -0.05 -11.97 16 11 C 0.14 3.30 6.25 -83.82 -0.52 2.78 16 12 C -0.22 -5.25 8.66 -39.09 -0.34 -5.59 16 13 C -0.10 -2.29 10.01 -39.70 -0.40 -2.68 16 14 C -0.16 -4.21 8.69 -38.83 -0.34 -4.55 16 15 C 0.12 3.22 5.57 -106.85 -0.59 2.62 16 16 C -0.46 -12.13 9.05 -37.74 -0.34 -12.47 16 17 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 18 C 0.08 1.89 5.16 -17.35 -0.09 1.80 16 19 N -0.79 -20.29 10.94 55.55 0.61 -19.68 16 20 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.24 -5.78 9.70 -38.67 -0.38 -6.15 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.96 6.17 -51.93 -0.32 0.64 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.95 6.17 -51.93 -0.32 0.63 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.41 4.38 7.94 -40.82 -0.32 4.06 16 35 H 0.41 6.90 8.30 -40.82 -0.34 6.56 16 36 H 0.10 2.29 6.46 -52.49 -0.34 1.96 16 37 H 0.09 2.00 8.06 -52.48 -0.42 1.58 16 38 H 0.12 3.19 6.17 -52.48 -0.32 2.87 16 39 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 40 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -29.03 334.12 -7.23 -36.26 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -5.32 Total: 13.12 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.37 Total: -9.93 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.31 Total: -39.94 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.15 Total: -18.02 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.03 -7.23 -36.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453694849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.694 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds