Wall clock time and date at job start Tue Mar 31 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47297 * 2 1 4 4 C 1.52997 * 109.47028 * 239.99918 * 2 1 3 5 5 N 1.46496 * 109.47332 * 120.00062 * 2 1 3 6 6 C 1.34787 * 119.99915 * 59.99760 * 5 2 1 7 7 O 1.21360 * 119.99648 * 0.02562 * 6 5 2 8 8 C 1.49357 * 119.99655 * 180.02562 * 6 5 2 9 9 O 1.21367 * 120.00130 * 0.02562 * 8 6 5 10 10 N 1.34780 * 119.99366 * 180.02562 * 8 6 5 11 11 C 1.39743 * 119.99714 * 185.11396 * 10 8 6 12 12 C 1.39344 * 119.95114 * 34.20000 * 11 10 8 13 13 C 1.38468 * 120.41849 * 179.97438 * 12 11 10 14 14 C 1.37693 * 120.33083 * 0.28100 * 13 12 11 15 15 C 1.40744 * 119.89527 * 359.49464 * 14 13 12 16 16 C 1.41413 * 120.20765 * 180.24943 * 15 14 13 17 17 H 1.07999 * 120.00217 * 205.30599 * 16 15 14 18 18 C 1.39933 * 119.99910 * 25.31228 * 16 15 14 19 19 N 1.30826 * 120.00058 * 16.69518 * 18 16 15 20 20 Si 1.86802 * 120.00125 * 196.69109 * 18 16 15 21 21 H 1.48501 * 109.47181 * 89.99670 * 20 18 16 22 22 H 1.48496 * 109.47457 * 210.00328 * 20 18 16 23 23 H 1.48510 * 109.46950 * 330.00156 * 20 18 16 24 24 C 1.38304 * 119.95238 * 214.22580 * 11 10 8 25 25 H 1.09000 * 109.46959 * 300.00000 * 1 2 3 26 26 H 1.09001 * 109.47415 * 60.00012 * 1 2 3 27 27 H 1.09004 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47111 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46878 * 300.00317 * 3 2 1 30 30 H 1.08999 * 109.46598 * 59.99531 * 3 2 1 31 31 H 1.09002 * 109.47740 * 300.00104 * 4 2 1 32 32 H 1.09000 * 109.47353 * 60.00166 * 4 2 1 33 33 H 1.09004 * 109.47381 * 179.97438 * 4 2 1 34 34 H 0.96993 * 120.00253 * 240.00117 * 5 2 1 35 35 H 0.96996 * 120.00056 * 5.11378 * 10 8 6 36 36 H 1.07990 * 119.79277 * 0.02562 * 12 11 10 37 37 H 1.08007 * 119.83639 * 179.97438 * 13 12 11 38 38 H 1.08009 * 120.05223 * 179.73911 * 14 13 12 39 39 H 0.97001 * 120.00187 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.15967 * 359.94905 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1961 6 6 1.6927 -1.9810 1.4094 7 8 0.9953 -2.5709 0.6103 8 6 2.1902 -2.6849 2.6292 9 8 2.8872 -2.0948 3.4285 10 7 1.8649 -3.9754 2.8422 11 6 2.2397 -4.6030 4.0332 12 6 2.2752 -3.8759 5.2214 13 6 2.6446 -4.4881 6.4071 14 6 2.9867 -5.8217 6.4240 15 6 2.9509 -6.5702 5.2326 16 6 3.2958 -7.9416 5.2433 17 1 3.6642 -8.4128 4.3440 18 6 3.1597 -8.6882 6.4190 19 7 2.4247 -8.2335 7.4011 20 14 4.0273 -10.3340 6.5860 21 1 5.3768 -10.1253 7.1694 22 1 3.2360 -11.2228 7.4743 23 1 4.1587 -10.9625 5.2469 24 6 2.5753 -5.9447 4.0308 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7490 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 2.5760 -0.2192 1.8346 35 1 1.3708 -4.4685 2.1688 36 1 2.0122 -2.8285 5.2176 37 1 2.6693 -3.9155 7.3226 38 1 3.2782 -6.2937 7.3507 39 1 2.3307 -8.7508 8.2163 40 1 2.5477 -6.5093 3.1105 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453694849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:52 Heat of formation + Delta-G solvation = -74.318578 kcal Electronic energy + Delta-G solvation = -22452.661710 eV Core-core repulsion = 19038.168622 eV Total energy + Delta-G solvation = -3414.493088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.08295 -40.51381 -38.96140 -37.71465 -36.28736 -34.90594 -33.07199 -31.80844 -30.31374 -28.27407 -28.21894 -27.24929 -26.20328 -23.16973 -22.80435 -21.46870 -20.68159 -19.81246 -19.27614 -17.71413 -17.36625 -17.04159 -16.75250 -16.62699 -16.37262 -15.56760 -15.38417 -15.09112 -14.71484 -14.67464 -14.56656 -14.10452 -13.58505 -13.46257 -13.24460 -13.02309 -13.02102 -12.84338 -12.75667 -12.55957 -12.54163 -12.24837 -12.17082 -11.99279 -11.75099 -11.60475 -11.20526 -10.87987 -10.50389 -10.31288 -9.45059 -8.83965 -8.64413 -6.38331 0.14366 0.94315 1.02389 1.31502 1.40690 1.53729 1.54127 2.12798 2.22122 2.61483 2.73356 3.33930 3.69613 3.83711 3.95242 4.08515 4.38466 4.59586 4.65152 4.69714 4.72699 4.85669 4.89835 4.92882 4.97914 4.98844 5.04486 5.09466 5.21242 5.26922 5.30117 5.38153 5.43098 5.64198 5.72590 5.95528 6.05533 6.08693 6.27254 6.45076 6.63066 6.74584 6.89398 6.91673 7.01151 8.33182 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039207 B = 0.002993 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.979754 B = 9352.098559 C = 9712.192263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.159 3.841 3 C -0.150 4.150 4 C -0.164 4.164 5 N -0.682 5.682 6 C 0.521 3.479 7 O -0.529 6.529 8 C 0.496 3.504 9 O -0.527 6.527 10 N -0.632 5.632 11 C 0.154 3.846 12 C -0.233 4.233 13 C -0.095 4.095 14 C -0.189 4.189 15 C 0.095 3.905 16 C -0.496 4.496 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.823 5.823 20 Si 0.984 3.016 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.252 4.252 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.417 0.583 35 H 0.422 0.578 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.289 0.711 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 14.485 -12.441 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 C -0.207 4.207 4 C -0.222 4.222 5 N -0.336 5.336 6 C 0.301 3.699 7 O -0.406 6.406 8 C 0.278 3.722 9 O -0.403 6.403 10 N -0.278 5.278 11 C 0.061 3.939 12 C -0.254 4.254 13 C -0.114 4.114 14 C -0.209 4.209 15 C 0.093 3.907 16 C -0.525 4.525 17 H 0.096 0.904 18 C -0.179 4.179 19 N -0.449 5.449 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.182 1.182 24 C -0.274 4.274 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.255 0.745 35 H 0.260 0.740 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.691 14.497 -12.272 19.069 hybrid contribution 0.233 -0.959 0.437 1.080 sum -1.458 13.538 -11.835 18.041 Atomic orbital electron populations 1.22227 0.93881 1.02832 1.03244 1.20782 0.94802 0.93399 0.83517 1.22084 1.02235 0.91876 1.04515 1.22228 1.01286 1.01546 0.97135 1.46047 1.51622 1.09987 1.25914 1.19658 0.81206 0.83757 0.85289 1.90700 1.37366 1.66619 1.45898 1.20659 0.81129 0.82877 0.87495 1.90751 1.36397 1.66031 1.47151 1.43130 1.54475 1.11362 1.18790 1.17473 0.99691 0.91969 0.84722 1.20455 1.14131 0.99243 0.91549 1.20822 0.98973 0.94670 0.96891 1.21373 1.07238 0.93202 0.99051 1.17734 0.88240 0.93642 0.91128 1.19806 1.40413 0.94544 0.97750 0.90357 1.26758 0.93166 1.03810 0.94173 1.69866 1.28920 1.40032 1.06039 0.85170 0.78762 0.76153 0.79420 1.18749 1.19224 1.18194 1.20877 1.13694 0.93868 0.98929 0.92307 0.89305 0.92888 0.91136 0.88589 0.91134 0.92860 0.89306 0.92303 0.74542 0.73989 0.87315 0.86663 0.87481 0.89991 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 8.40 71.98 0.60 -2.18 16 2 C 0.16 2.60 1.06 3.60 0.00 2.60 16 3 C -0.15 -1.47 8.59 71.98 0.62 -0.85 16 4 C -0.16 -2.78 8.40 71.98 0.60 -2.18 16 5 N -0.68 -14.61 5.10 -424.33 -2.16 -16.77 16 6 C 0.52 14.82 7.31 87.24 0.64 15.45 16 7 O -0.53 -16.21 12.69 -3.28 -0.04 -16.25 16 8 C 0.50 17.33 7.62 87.24 0.66 17.99 16 9 O -0.53 -20.60 14.20 -3.30 -0.05 -20.65 16 10 N -0.63 -23.73 5.32 -304.98 -1.62 -25.36 16 11 C 0.15 7.06 6.25 38.16 0.24 7.30 16 12 C -0.23 -10.96 8.66 22.59 0.20 -10.76 16 13 C -0.09 -4.59 10.01 22.20 0.22 -4.36 16 14 C -0.19 -10.09 8.69 22.75 0.20 -9.89 16 15 C 0.10 5.19 5.57 -21.31 -0.12 5.08 16 16 C -0.50 -26.59 9.05 23.46 0.21 -26.37 16 17 H 0.08 4.04 7.90 -2.91 -0.02 4.01 16 18 C 0.04 1.81 5.16 85.25 0.44 2.25 16 19 N -0.82 -42.70 10.94 21.82 0.24 -42.47 16 20 Si 0.98 37.87 29.59 68.60 2.03 39.90 16 21 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 24 C -0.25 -12.47 9.70 22.86 0.22 -12.25 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.21 6.17 -2.38 -0.01 1.20 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 1.21 6.17 -2.39 -0.01 1.20 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.42 8.11 7.94 -92.71 -0.74 7.38 16 35 H 0.42 14.07 8.30 -92.71 -0.77 13.30 16 36 H 0.11 4.90 6.46 -2.92 -0.02 4.88 16 37 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 38 H 0.11 5.90 6.17 -2.91 -0.02 5.89 16 39 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 40 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -63.35 334.12 2.71 -60.64 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -0.43 Total: 39.14 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 4.74 Total: -18.18 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -3.55 Total: -84.60 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -0.09 Total: -36.90 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -63.35 2.71 -60.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453694849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.681 kcal (2) G-P(sol) polarization free energy of solvation -63.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds