Wall clock time and date at job start Tue Mar 31 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47225 * 2 1 4 4 C 1.50707 * 109.47001 * 239.99799 * 2 1 3 5 5 H 1.07997 * 119.99832 * 240.00246 * 4 2 1 6 6 C 1.37873 * 119.99689 * 60.00113 * 4 2 1 7 7 N 1.31513 * 120.00421 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00019 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46929 * 59.99688 * 8 6 4 10 10 H 1.48494 * 109.47501 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46871 * 300.00104 * 8 6 4 12 12 C 1.53004 * 109.47158 * 119.99865 * 2 1 3 13 13 N 1.46496 * 109.47258 * 300.00174 * 12 2 1 14 14 C 1.34773 * 119.99894 * 180.02562 * 13 12 2 15 15 O 1.21358 * 120.00137 * 359.97438 * 14 13 12 16 16 C 1.49359 * 119.99889 * 179.97438 * 14 13 12 17 17 O 1.21372 * 119.99795 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99889 * 179.97438 * 16 14 13 19 19 C 1.39729 * 119.99927 * 184.62357 * 18 16 14 20 20 C 1.38926 * 120.07591 * 144.90102 * 19 18 16 21 21 C 1.38097 * 119.92215 * 179.97438 * 20 19 18 22 22 C 1.38284 * 120.07831 * 0.02562 * 21 20 19 23 23 C 1.38299 * 120.15416 * 359.97438 * 22 21 20 24 24 C 1.38105 * 120.07290 * 0.02562 * 23 22 21 25 25 H 1.09000 * 109.46870 * 299.99953 * 1 2 3 26 26 H 1.08997 * 109.46657 * 60.00217 * 1 2 3 27 27 H 1.09003 * 109.46808 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47364 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46902 * 300.00233 * 3 2 1 30 30 H 1.08995 * 109.47420 * 59.99831 * 3 2 1 31 31 H 0.96997 * 120.00401 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47122 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.46905 * 60.00311 * 12 2 1 34 34 H 0.97004 * 119.99951 * 359.97438 * 13 12 2 35 35 H 0.96996 * 120.00261 * 4.62428 * 18 16 14 36 36 H 1.08004 * 120.03995 * 359.71022 * 20 19 18 37 37 H 1.08007 * 119.96128 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.93031 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.96789 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.03549 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8280 -2.5198 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4908 3.6695 15 8 2.5755 -1.4775 3.7808 16 6 1.3804 0.2136 4.8890 17 8 0.6822 1.2001 4.7776 18 7 1.7060 -0.2469 6.1131 19 6 1.1631 0.3529 7.2523 20 6 0.8541 -0.4190 8.3653 21 6 0.3181 0.1771 9.4898 22 6 0.0884 1.5406 9.5086 23 6 0.3948 2.3121 8.4024 24 6 0.9311 1.7225 7.2745 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 0.7090 1.1614 -3.4844 32 1 3.1301 -0.7216 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 0.9943 0.7582 2.3564 35 1 2.3172 -0.9946 6.2032 36 1 1.0288 -1.4847 8.3497 37 1 0.0772 -0.4224 10.3553 38 1 -0.3312 2.0043 10.3891 39 1 0.2146 3.3767 8.4205 40 1 1.1697 2.3254 6.4109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457987315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:54 Heat of formation + Delta-G solvation = -44.678523 kcal Electronic energy + Delta-G solvation = -22438.596093 eV Core-core repulsion = 19025.388294 eV Total energy + Delta-G solvation = -3413.207799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01070 -39.36037 -38.11380 -36.56078 -35.09409 -33.35468 -31.13340 -30.93495 -29.92549 -26.45417 -25.75863 -25.34783 -24.08513 -23.00417 -21.92249 -20.20127 -19.09962 -18.56670 -17.54733 -16.74790 -16.21918 -15.89960 -15.71027 -15.07993 -14.80319 -14.69325 -14.27427 -14.06846 -13.61672 -13.53438 -13.05053 -12.96800 -12.72516 -12.26760 -12.09217 -11.54734 -11.43698 -11.34524 -11.19183 -10.89082 -10.76482 -10.56792 -10.43362 -10.22752 -9.69055 -9.62547 -9.32371 -9.12295 -8.84730 -8.69014 -8.41115 -8.38988 -6.05195 -4.16351 0.91669 1.19403 1.63606 2.40883 3.28048 3.28939 3.32920 3.35758 3.62715 3.77775 4.36441 4.62663 4.71894 4.74233 4.94945 5.18941 5.21430 5.30337 5.37121 5.79477 6.04186 6.06994 6.09884 6.18274 6.25106 6.33702 6.42224 6.54749 6.74946 6.80417 6.81016 6.88696 6.96491 6.97246 7.29255 7.51544 7.55042 7.66001 7.83074 7.96757 8.07747 8.23148 8.35497 8.83618 9.49757 10.96216 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043458 B = 0.002897 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.150885 B = 9661.877061 C =10041.085619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.057 3.943 3 C -0.134 4.134 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.127 3.873 13 N -0.677 5.677 14 C 0.498 3.502 15 O -0.532 6.532 16 C 0.508 3.492 17 O -0.500 6.500 18 N -0.650 5.650 19 C 0.143 3.857 20 C -0.142 4.142 21 C -0.103 4.103 22 C -0.136 4.136 23 C -0.102 4.102 24 C -0.121 4.121 25 H 0.008 0.992 26 H 0.088 0.912 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.088 0.912 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.412 0.588 35 H 0.423 0.577 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 0.981 20.423 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.056 3.944 3 C -0.192 4.192 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.328 5.328 14 C 0.277 3.723 15 O -0.410 6.410 16 C 0.291 3.709 17 O -0.373 6.373 18 N -0.297 5.297 19 C 0.049 3.951 20 C -0.162 4.162 21 C -0.122 4.122 22 C -0.155 4.155 23 C -0.121 4.121 24 C -0.141 4.141 25 H 0.027 0.973 26 H 0.106 0.894 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.106 0.894 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.249 0.751 35 H 0.261 0.739 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.914 1.084 20.139 20.188 hybrid contribution 0.326 -0.505 -0.831 1.026 sum -0.589 0.578 19.307 19.325 Atomic orbital electron populations 1.21867 0.97575 0.99326 1.00419 1.18380 0.92980 0.92859 0.90195 1.21863 0.98653 0.98242 1.00420 1.20905 1.31843 1.12240 0.89765 0.92373 1.24879 0.94789 0.94895 0.98882 1.69791 1.36398 1.22608 1.23465 0.86608 0.79219 0.79760 0.82115 1.20264 1.21301 1.20256 1.21991 0.98648 0.96103 0.82703 1.46230 1.50215 1.31332 1.05051 1.19722 0.82578 0.85289 0.84697 1.90745 1.37829 1.25813 1.86619 1.20691 0.80662 0.84714 0.84833 1.90757 1.35634 1.24369 1.86534 1.43181 1.46714 1.36085 1.03719 1.17808 0.98461 0.92158 0.86667 1.20961 1.02084 0.99642 0.93545 1.20938 0.98665 0.95002 0.97567 1.21172 1.01477 0.94134 0.98674 1.21094 0.98182 1.00122 0.92670 1.21376 1.00246 0.93098 0.99336 0.97296 0.89384 0.95307 0.95302 0.89381 0.97302 0.92839 0.91832 0.91854 0.75091 0.73919 0.85466 0.85624 0.85973 0.85594 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 2 C 0.06 1.29 0.50 -155.65 -0.08 1.21 16 3 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 4 C -0.51 -13.05 8.01 -34.44 -0.28 -13.33 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.40 9.35 55.43 0.52 -22.88 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 C 0.13 2.60 4.50 -4.04 -0.02 2.58 16 13 N -0.68 -12.22 4.95 -60.76 -0.30 -12.52 16 14 C 0.50 8.47 7.89 -11.63 -0.09 8.38 16 15 O -0.53 -9.85 16.48 5.49 0.09 -9.76 16 16 C 0.51 7.66 7.73 -11.63 -0.09 7.57 16 17 O -0.50 -8.30 13.91 5.48 0.08 -8.23 16 18 N -0.65 -7.99 5.32 -10.30 -0.05 -8.05 16 19 C 0.14 1.69 6.30 -83.75 -0.53 1.16 16 20 C -0.14 -1.36 9.97 -39.38 -0.39 -1.75 16 21 C -0.10 -0.86 10.04 -39.62 -0.40 -1.26 16 22 C -0.14 -1.16 10.04 -39.54 -0.40 -1.55 16 23 C -0.10 -1.00 10.04 -39.61 -0.40 -1.40 16 24 C -0.12 -1.46 8.70 -39.37 -0.34 -1.80 16 25 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 26 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 30 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.41 7.29 5.63 -40.82 -0.23 7.06 16 35 H 0.42 4.45 8.30 -40.82 -0.34 4.11 16 36 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.14 1.87 6.22 -52.49 -0.33 1.54 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -28.12 332.76 -7.34 -35.46 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.16 Total: 9.53 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.50 Total: -3.99 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.16 Total: -43.45 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.17 Total: -17.99 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.12 -7.34 -35.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.215 kcal (2) G-P(sol) polarization free energy of solvation -28.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds