Wall clock time and date at job start Tue Mar 31 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47225 * 2 1 4 4 C 1.50707 * 109.47001 * 239.99799 * 2 1 3 5 5 H 1.07997 * 119.99832 * 240.00246 * 4 2 1 6 6 C 1.37873 * 119.99689 * 60.00113 * 4 2 1 7 7 N 1.31513 * 120.00421 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00019 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46929 * 59.99688 * 8 6 4 10 10 H 1.48494 * 109.47501 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46871 * 300.00104 * 8 6 4 12 12 C 1.53004 * 109.47158 * 119.99865 * 2 1 3 13 13 N 1.46496 * 109.47258 * 300.00174 * 12 2 1 14 14 C 1.34773 * 119.99894 * 180.02562 * 13 12 2 15 15 O 1.21358 * 120.00137 * 359.97438 * 14 13 12 16 16 C 1.49359 * 119.99889 * 179.97438 * 14 13 12 17 17 O 1.21372 * 119.99795 * 0.02562 * 16 14 13 18 18 N 1.34773 * 119.99889 * 179.97438 * 16 14 13 19 19 C 1.39729 * 119.99927 * 184.62357 * 18 16 14 20 20 C 1.38926 * 120.07591 * 144.90102 * 19 18 16 21 21 C 1.38097 * 119.92215 * 179.97438 * 20 19 18 22 22 C 1.38284 * 120.07831 * 0.02562 * 21 20 19 23 23 C 1.38299 * 120.15416 * 359.97438 * 22 21 20 24 24 C 1.38105 * 120.07290 * 0.02562 * 23 22 21 25 25 H 1.09000 * 109.46870 * 299.99953 * 1 2 3 26 26 H 1.08997 * 109.46657 * 60.00217 * 1 2 3 27 27 H 1.09003 * 109.46808 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47364 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46902 * 300.00233 * 3 2 1 30 30 H 1.08995 * 109.47420 * 59.99831 * 3 2 1 31 31 H 0.96997 * 120.00401 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47122 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.46905 * 60.00311 * 12 2 1 34 34 H 0.97004 * 119.99951 * 359.97438 * 13 12 2 35 35 H 0.96996 * 120.00261 * 4.62428 * 18 16 14 36 36 H 1.08004 * 120.03995 * 359.71022 * 20 19 18 37 37 H 1.08007 * 119.96128 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.93031 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.96789 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.03549 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8280 -2.5198 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4908 3.6695 15 8 2.5755 -1.4775 3.7808 16 6 1.3804 0.2136 4.8890 17 8 0.6822 1.2001 4.7776 18 7 1.7060 -0.2469 6.1131 19 6 1.1631 0.3529 7.2523 20 6 0.8541 -0.4190 8.3653 21 6 0.3181 0.1771 9.4898 22 6 0.0884 1.5406 9.5086 23 6 0.3948 2.3121 8.4024 24 6 0.9311 1.7225 7.2745 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 0.7090 1.1614 -3.4844 32 1 3.1301 -0.7216 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 0.9943 0.7582 2.3564 35 1 2.3172 -0.9946 6.2032 36 1 1.0288 -1.4847 8.3497 37 1 0.0772 -0.4224 10.3553 38 1 -0.3312 2.0043 10.3891 39 1 0.2146 3.3767 8.4205 40 1 1.1697 2.3254 6.4109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457987315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:53 Heat of formation + Delta-G solvation = -61.632086 kcal Electronic energy + Delta-G solvation = -22439.331255 eV Core-core repulsion = 19025.388294 eV Total energy + Delta-G solvation = -3413.942961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16087 -40.51468 -39.20803 -38.24181 -36.16603 -34.98785 -32.77940 -31.85127 -30.79514 -27.97033 -27.60160 -27.23556 -25.40633 -23.80211 -22.90980 -21.42508 -20.73704 -19.91051 -18.54678 -18.04246 -17.59270 -17.26143 -16.90109 -16.65179 -16.30945 -15.89515 -15.35657 -15.19392 -14.85281 -14.77078 -14.46716 -14.26170 -14.06637 -13.77403 -13.22584 -13.16470 -13.02886 -12.69410 -12.63315 -12.40557 -12.28692 -12.21861 -12.12247 -11.52084 -11.48038 -11.30688 -10.79521 -10.67851 -10.41829 -10.18035 -9.87624 -9.24545 -8.02072 -6.18819 -0.07144 0.45838 0.57633 1.22129 1.45985 1.47342 1.53717 2.02378 2.43980 2.59822 2.86754 3.21932 3.32273 3.99006 4.06343 4.31005 4.32329 4.45450 4.48054 4.53469 4.57804 4.66130 4.90093 5.02242 5.03002 5.10821 5.15713 5.16895 5.25114 5.28830 5.46167 5.51284 5.61251 5.63473 5.66791 5.87246 6.05732 6.10092 6.17406 6.30200 6.40088 6.63094 6.82241 6.88446 7.49364 8.97048 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043458 B = 0.002897 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.150885 B = 9661.877061 C =10041.085619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.051 3.949 3 C -0.125 4.125 4 C -0.528 4.528 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.948 3.052 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.142 3.858 13 N -0.678 5.678 14 C 0.503 3.497 15 O -0.546 6.546 16 C 0.514 3.486 17 O -0.519 6.519 18 N -0.634 5.634 19 C 0.115 3.885 20 C -0.141 4.141 21 C -0.102 4.102 22 C -0.130 4.130 23 C -0.111 4.111 24 C -0.143 4.143 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.414 0.586 35 H 0.430 0.570 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 0.520 22.765 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 C -0.183 4.183 4 C -0.566 4.566 5 H 0.071 0.929 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.020 3.980 13 N -0.330 5.330 14 C 0.283 3.717 15 O -0.425 6.425 16 C 0.296 3.704 17 O -0.394 6.394 18 N -0.281 5.281 19 C 0.022 3.978 20 C -0.161 4.161 21 C -0.120 4.120 22 C -0.149 4.149 23 C -0.129 4.129 24 C -0.163 4.163 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.252 0.748 35 H 0.270 0.730 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.192 0.613 22.522 22.562 hybrid contribution 0.402 -0.354 -1.411 1.509 sum -0.790 0.259 21.111 21.127 Atomic orbital electron populations 1.21719 0.97387 0.98933 1.00219 1.18373 0.93107 0.92996 0.90472 1.21715 0.98275 0.98033 1.00236 1.21221 1.31895 1.12351 0.91142 0.92939 1.25494 0.95096 0.95554 1.01166 1.69914 1.36979 1.23375 1.23728 0.85769 0.78664 0.78770 0.79319 1.20085 1.21155 1.20068 1.21596 0.98094 0.95567 0.82782 1.46062 1.50605 1.31417 1.04901 1.20010 0.81833 0.84914 0.84955 1.90733 1.38358 1.26486 1.86931 1.20202 0.80779 0.84483 0.84968 1.90758 1.36816 1.25121 1.86724 1.43044 1.46155 1.35783 1.03108 1.18040 1.00278 0.92467 0.87059 1.21248 1.01324 1.00555 0.92964 1.21372 0.97293 0.95339 0.97980 1.21572 1.00055 0.94313 0.98928 1.21339 0.97890 1.01216 0.92462 1.21372 1.01810 0.93420 0.99737 0.95193 0.91775 0.95721 0.95692 0.91778 0.95162 0.93031 0.92452 0.92502 0.74807 0.73001 0.83556 0.82487 0.83075 0.84125 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 2 C 0.05 2.35 0.50 -52.92 -0.03 2.32 16 3 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 4 C -0.53 -27.25 8.01 25.60 0.21 -27.04 16 5 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 6 C 0.03 1.39 5.15 84.65 0.44 1.83 16 7 N -0.90 -48.20 9.35 21.45 0.20 -48.00 16 8 Si 0.95 42.02 29.54 68.60 2.03 44.05 16 9 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 C 0.14 5.81 4.50 86.38 0.39 6.20 16 13 N -0.68 -24.22 4.95 -464.51 -2.30 -26.52 16 14 C 0.50 16.88 7.89 87.24 0.69 17.57 16 15 O -0.55 -19.93 16.48 -3.27 -0.05 -19.98 16 16 C 0.51 15.31 7.73 87.24 0.67 15.99 16 17 O -0.52 -17.27 13.91 -3.31 -0.05 -17.32 16 18 N -0.63 -15.11 5.32 -304.84 -1.62 -16.74 16 19 C 0.11 2.58 6.30 38.21 0.24 2.82 16 20 C -0.14 -2.35 9.97 22.40 0.22 -2.12 16 21 C -0.10 -1.34 10.04 22.25 0.22 -1.12 16 22 C -0.13 -1.79 10.04 22.30 0.22 -1.57 16 23 C -0.11 -1.99 10.04 22.25 0.22 -1.77 16 24 C -0.14 -3.40 8.70 22.40 0.19 -3.21 16 25 H 0.03 1.18 6.86 -2.39 -0.02 1.17 16 26 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 30 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 31 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.41 14.43 5.63 -92.71 -0.52 13.91 16 35 H 0.43 8.62 8.30 -92.71 -0.77 7.85 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.12 3.28 6.22 -2.91 -0.02 3.26 16 Total: -1.00 -60.07 332.76 2.85 -57.22 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -0.22 Total: 27.50 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 4.86 Total: -0.22 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -3.72 Total: -91.26 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.10 Total: -37.30 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -60.07 2.85 -57.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.409 kcal (2) G-P(sol) polarization free energy of solvation -60.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds