Wall clock time and date at job start Tue Mar 31 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47169 * 2 1 4 4 C 1.50694 * 109.47345 * 239.99866 * 2 1 3 5 5 H 1.08001 * 120.00413 * 241.34894 * 4 2 1 6 6 C 1.37885 * 120.00104 * 61.34543 * 4 2 1 7 7 N 1.31509 * 119.99928 * 193.97511 * 6 4 2 8 8 Si 1.86794 * 119.99752 * 13.97833 * 6 4 2 9 9 H 1.48506 * 109.47193 * 84.54652 * 8 6 4 10 10 H 1.48495 * 109.47458 * 204.54662 * 8 6 4 11 11 H 1.48499 * 109.47359 * 324.54846 * 8 6 4 12 12 C 1.52995 * 109.47153 * 119.99759 * 2 1 3 13 13 N 1.46500 * 109.47280 * 300.00258 * 12 2 1 14 14 C 1.34775 * 120.00059 * 180.02562 * 13 12 2 15 15 O 1.21552 * 120.00617 * 359.97438 * 14 13 12 16 16 C 1.47863 * 119.99841 * 180.02562 * 14 13 12 17 17 C 1.39696 * 120.07467 * 359.97438 * 16 14 13 18 18 C 1.38064 * 120.14401 * 180.02562 * 17 16 14 19 19 C 1.38091 * 120.29938 * 359.75609 * 18 17 16 20 20 C 1.39667 * 120.14117 * 0.52309 * 19 18 17 21 21 C 1.47866 * 120.07338 * 179.74124 * 20 19 18 22 22 N 1.34774 * 119.99816 * 359.71712 * 21 20 19 23 23 O 1.21550 * 119.99767 * 179.72445 * 21 20 19 24 24 C 1.39303 * 120.07140 * 179.97438 * 16 14 13 25 25 H 1.09007 * 109.47444 * 309.37128 * 1 2 3 26 26 H 1.08998 * 109.47055 * 69.36717 * 1 2 3 27 27 H 1.09000 * 109.47169 * 189.36891 * 1 2 3 28 28 H 1.08995 * 109.47147 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.46920 * 299.99783 * 3 2 1 30 30 H 1.08998 * 109.47309 * 59.99866 * 3 2 1 31 31 H 0.97007 * 119.99918 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47786 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.47251 * 59.99763 * 12 2 1 34 34 H 0.96997 * 120.00348 * 359.97438 * 13 12 2 35 35 H 1.08002 * 119.93138 * 0.02562 * 17 16 14 36 36 H 1.08009 * 119.84557 * 180.02562 * 18 17 16 37 37 H 1.07999 * 119.93221 * 180.27793 * 19 18 17 38 38 H 0.97001 * 120.00423 * 0.02562 * 22 21 20 39 39 H 0.97000 * 119.99950 * 179.72690 * 22 21 20 40 40 H 1.08001 * 120.14619 * 0.02562 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6351 -1.6010 -1.1315 6 6 1.7223 -0.2234 -2.4826 7 7 1.9158 -0.9726 -3.5459 8 14 1.0275 1.5005 -2.6685 9 1 2.1417 2.4816 -2.7084 10 1 0.2470 1.5865 -3.9288 11 1 0.1417 1.8042 -1.5160 12 6 2.0399 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6695 15 8 2.5764 -1.4789 3.7812 16 6 1.3842 0.2060 4.8767 17 6 0.5805 1.3416 4.7503 18 6 0.1194 1.9936 5.8766 19 6 0.4446 1.5258 7.1345 20 6 1.2522 0.3950 7.2751 21 6 1.6042 -0.1012 8.6229 22 7 1.1503 0.5413 9.7172 23 8 2.3029 -1.0884 8.7436 24 6 1.7198 -0.2686 6.1427 25 1 -0.3634 0.6519 0.7945 26 1 -0.3633 0.3621 -0.9617 27 1 -0.3633 -1.0139 0.1673 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6974 -0.6301 -4.4268 32 1 3.1299 -0.7216 1.2491 33 1 1.6766 -1.7489 1.2493 34 1 0.9942 0.7583 2.3564 35 1 0.3192 1.7104 3.7694 36 1 -0.5020 2.8709 5.7733 37 1 0.0770 2.0378 8.0115 38 1 0.5925 1.3289 9.6209 39 1 1.3780 0.2135 10.6013 40 1 2.3412 -1.1458 6.2459 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:14 Heat of formation + Delta-G solvation = -36.847246 kcal Electronic energy + Delta-G solvation = -22525.474647 eV Core-core repulsion = 19112.606438 eV Total energy + Delta-G solvation = -3412.868210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60422 -39.52347 -38.01925 -36.71732 -34.23426 -33.50926 -31.81078 -31.34786 -31.04065 -26.48767 -26.26016 -25.03127 -24.56024 -23.24471 -21.46172 -20.07199 -19.36445 -18.64230 -17.31349 -16.75706 -16.42064 -16.08772 -15.52200 -15.23172 -15.16112 -14.86594 -14.64079 -14.36901 -14.05732 -13.51835 -13.39294 -12.96567 -12.67898 -12.59724 -12.34126 -12.24389 -12.09064 -11.62371 -11.35593 -10.48713 -10.43228 -10.36640 -10.21592 -10.11330 -10.10403 -9.72861 -9.38282 -9.33723 -9.16553 -8.73041 -8.60547 -8.48286 -6.17356 -4.14934 0.34726 0.81147 2.36019 3.05354 3.07923 3.20709 3.27387 3.35936 3.48217 3.74206 4.32420 4.33486 4.40177 4.50867 4.80128 4.88943 5.08058 5.13006 5.27179 5.56875 5.70993 5.87468 5.92192 5.99319 6.00643 6.01482 6.29263 6.33652 6.42038 6.45869 6.47138 6.58308 6.64606 6.70284 6.90253 6.91508 7.16786 7.38364 7.68256 7.81275 7.87863 8.40099 8.47987 8.88309 9.46091 10.95737 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036098 B = 0.003268 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.473587 B = 8566.036177 C = 9134.130954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.715 5.715 14 C 0.547 3.453 15 O -0.536 6.536 16 C -0.131 4.131 17 C -0.061 4.061 18 C -0.133 4.133 19 C -0.068 4.068 20 C -0.150 4.150 21 C 0.565 3.435 22 N -0.852 5.852 23 O -0.533 6.533 24 C -0.002 4.002 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.028 0.972 31 H 0.265 0.735 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.395 0.605 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.400 0.600 39 H 0.405 0.595 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 10.780 22.584 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.366 5.366 14 C 0.333 3.667 15 O -0.415 6.415 16 C -0.134 4.134 17 C -0.080 4.080 18 C -0.151 4.151 19 C -0.087 4.087 20 C -0.154 4.154 21 C 0.351 3.649 22 N -0.417 5.417 23 O -0.409 6.409 24 C -0.022 4.022 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.231 0.769 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.230 0.770 39 H 0.237 0.763 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.045 9.371 22.301 24.934 hybrid contribution -0.853 1.751 -0.055 1.948 sum -6.898 11.121 22.247 25.811 Atomic orbital electron populations 1.22309 0.97831 0.99913 0.99959 1.18724 0.92522 0.92261 0.93767 1.22374 1.01339 0.98292 0.98519 1.20709 1.34156 1.12386 0.87930 0.90463 1.24977 0.94669 0.97302 0.95780 1.69949 1.48048 1.35913 0.98748 0.87293 0.79327 0.85569 0.76000 1.21327 1.23379 1.17539 1.21587 0.98848 0.95941 0.81762 1.46241 1.52601 1.31741 1.06004 1.18148 0.80962 0.84337 0.83270 1.90792 1.37983 1.25973 1.86715 1.20145 1.01447 0.97595 0.94231 1.21633 0.93583 0.93089 0.99647 1.21049 1.01361 1.00883 0.91765 1.21420 0.94995 0.94217 0.98086 1.19813 1.03495 0.98745 0.93307 1.18228 0.79148 0.82782 0.84769 1.43730 1.55894 1.33239 1.08818 1.90860 1.37350 1.25711 1.87025 1.21428 0.93679 0.97606 0.89475 0.96071 0.92424 0.93281 0.92663 0.93946 0.95314 0.92515 0.91647 0.91546 0.76891 0.84870 0.84581 0.85296 0.77038 0.76343 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 7.53 37.15 0.28 -2.53 16 2 C 0.03 0.61 0.50 -155.67 -0.08 0.53 16 3 C -0.15 -2.91 7.52 37.16 0.28 -2.63 16 4 C -0.51 -13.62 8.62 -34.44 -0.30 -13.92 16 5 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 6 C 0.08 2.07 5.32 -17.82 -0.09 1.98 16 7 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 8 Si 0.89 20.67 22.79 -169.99 -3.87 16.80 16 9 H -0.29 -6.65 7.10 56.52 0.40 -6.25 16 10 H -0.31 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.25 -5.23 4.65 56.52 0.26 -4.96 16 12 C 0.14 2.78 4.49 -4.04 -0.02 2.76 16 13 N -0.71 -11.54 4.95 -61.25 -0.30 -11.85 16 14 C 0.55 9.16 7.77 -12.32 -0.10 9.07 16 15 O -0.54 -11.09 16.34 5.32 0.09 -11.01 16 16 C -0.13 -1.72 5.87 -105.02 -0.62 -2.33 16 17 C -0.06 -0.58 9.54 -39.10 -0.37 -0.96 16 18 C -0.13 -0.95 10.02 -39.70 -0.40 -1.35 16 19 C -0.07 -0.47 9.54 -39.10 -0.37 -0.85 16 20 C -0.15 -1.55 5.87 -105.02 -0.62 -2.17 16 21 C 0.56 6.01 8.05 -12.32 -0.10 5.91 16 22 N -0.85 -4.75 8.82 30.53 0.27 -4.49 16 23 O -0.53 -8.11 17.18 5.32 0.09 -8.02 16 24 C 0.00 -0.03 9.14 -38.78 -0.35 -0.38 16 25 H 0.02 0.34 7.13 -51.93 -0.37 -0.04 16 26 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 27 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 30 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.40 5.35 4.28 -40.82 -0.17 5.18 16 35 H 0.13 1.07 6.39 -52.49 -0.34 0.74 16 36 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.13 0.39 6.39 -52.49 -0.34 0.05 16 38 H 0.40 0.94 6.85 -40.82 -0.28 0.66 16 39 H 0.41 1.78 8.93 -40.82 -0.36 1.41 16 40 H 0.15 2.31 7.23 -52.49 -0.38 1.93 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -34.67 320.19 -5.73 -40.40 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.74 Total: 5.84 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.85 Total: -6.88 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.74 Total: -41.96 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.18 Total: -19.02 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -3.87 Total: 16.80 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.67 -5.73 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.551 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds