Wall clock time and date at job start Tue Mar 31 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47169 * 2 1 4 4 C 1.50694 * 109.47345 * 239.99866 * 2 1 3 5 5 H 1.08001 * 120.00413 * 241.34894 * 4 2 1 6 6 C 1.37885 * 120.00104 * 61.34543 * 4 2 1 7 7 N 1.31509 * 119.99928 * 193.97511 * 6 4 2 8 8 Si 1.86794 * 119.99752 * 13.97833 * 6 4 2 9 9 H 1.48506 * 109.47193 * 84.54652 * 8 6 4 10 10 H 1.48495 * 109.47458 * 204.54662 * 8 6 4 11 11 H 1.48499 * 109.47359 * 324.54846 * 8 6 4 12 12 C 1.52995 * 109.47153 * 119.99759 * 2 1 3 13 13 N 1.46500 * 109.47280 * 300.00258 * 12 2 1 14 14 C 1.34775 * 120.00059 * 180.02562 * 13 12 2 15 15 O 1.21552 * 120.00617 * 359.97438 * 14 13 12 16 16 C 1.47863 * 119.99841 * 180.02562 * 14 13 12 17 17 C 1.39696 * 120.07467 * 359.97438 * 16 14 13 18 18 C 1.38064 * 120.14401 * 180.02562 * 17 16 14 19 19 C 1.38091 * 120.29938 * 359.75609 * 18 17 16 20 20 C 1.39667 * 120.14117 * 0.52309 * 19 18 17 21 21 C 1.47866 * 120.07338 * 179.74124 * 20 19 18 22 22 N 1.34774 * 119.99816 * 359.71712 * 21 20 19 23 23 O 1.21550 * 119.99767 * 179.72445 * 21 20 19 24 24 C 1.39303 * 120.07140 * 179.97438 * 16 14 13 25 25 H 1.09007 * 109.47444 * 309.37128 * 1 2 3 26 26 H 1.08998 * 109.47055 * 69.36717 * 1 2 3 27 27 H 1.09000 * 109.47169 * 189.36891 * 1 2 3 28 28 H 1.08995 * 109.47147 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.46920 * 299.99783 * 3 2 1 30 30 H 1.08998 * 109.47309 * 59.99866 * 3 2 1 31 31 H 0.97007 * 119.99918 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47786 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.47251 * 59.99763 * 12 2 1 34 34 H 0.96997 * 120.00348 * 359.97438 * 13 12 2 35 35 H 1.08002 * 119.93138 * 0.02562 * 17 16 14 36 36 H 1.08009 * 119.84557 * 180.02562 * 18 17 16 37 37 H 1.07999 * 119.93221 * 180.27793 * 19 18 17 38 38 H 0.97001 * 120.00423 * 0.02562 * 22 21 20 39 39 H 0.97000 * 119.99950 * 179.72690 * 22 21 20 40 40 H 1.08001 * 120.14619 * 0.02562 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6351 -1.6010 -1.1315 6 6 1.7223 -0.2234 -2.4826 7 7 1.9158 -0.9726 -3.5459 8 14 1.0275 1.5005 -2.6685 9 1 2.1417 2.4816 -2.7084 10 1 0.2470 1.5865 -3.9288 11 1 0.1417 1.8042 -1.5160 12 6 2.0399 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6695 15 8 2.5764 -1.4789 3.7812 16 6 1.3842 0.2060 4.8767 17 6 0.5805 1.3416 4.7503 18 6 0.1194 1.9936 5.8766 19 6 0.4446 1.5258 7.1345 20 6 1.2522 0.3950 7.2751 21 6 1.6042 -0.1012 8.6229 22 7 1.1503 0.5413 9.7172 23 8 2.3029 -1.0884 8.7436 24 6 1.7198 -0.2686 6.1427 25 1 -0.3634 0.6519 0.7945 26 1 -0.3633 0.3621 -0.9617 27 1 -0.3633 -1.0139 0.1673 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9564 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6974 -0.6301 -4.4268 32 1 3.1299 -0.7216 1.2491 33 1 1.6766 -1.7489 1.2493 34 1 0.9942 0.7583 2.3564 35 1 0.3192 1.7104 3.7694 36 1 -0.5020 2.8709 5.7733 37 1 0.0770 2.0378 8.0115 38 1 0.5925 1.3289 9.6209 39 1 1.3780 0.2135 10.6013 40 1 2.3412 -1.1458 6.2459 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:14 Heat of formation + Delta-G solvation = -66.075242 kcal Electronic energy + Delta-G solvation = -22526.742068 eV Core-core repulsion = 19112.606438 eV Total energy + Delta-G solvation = -3414.135631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.55426 -40.65392 -39.02090 -38.29017 -35.18372 -34.92367 -33.57624 -32.11635 -32.04518 -28.04250 -27.76217 -26.99087 -25.33431 -24.33958 -22.31384 -21.18274 -20.99744 -19.60294 -18.23020 -18.04751 -17.69913 -17.18941 -16.89407 -16.71384 -16.44211 -15.88360 -15.60200 -15.35770 -14.99803 -14.83266 -14.78236 -14.71823 -14.30186 -13.99729 -13.74217 -13.52328 -12.98409 -12.94554 -12.46584 -12.39239 -12.16980 -11.94802 -11.76889 -11.32729 -11.15546 -10.99192 -10.78597 -10.61951 -10.38605 -10.27776 -10.08736 -9.94547 -8.29618 -6.32249 -0.39983 -0.02243 1.37235 1.39816 1.53081 1.53634 2.04111 2.09798 2.36101 2.49624 2.85204 3.06427 3.60023 3.74685 3.82927 4.04424 4.05947 4.11541 4.30400 4.36552 4.40251 4.57115 4.76326 4.81237 4.85871 4.89390 4.93405 5.05513 5.13857 5.16312 5.22011 5.26207 5.37910 5.50854 5.70370 5.72739 5.80201 5.84739 6.29618 6.39117 6.54300 6.72430 7.18251 7.25754 7.32659 8.87855 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036098 B = 0.003268 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.473587 B = 8566.036177 C = 9134.130954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 C -0.149 4.149 4 C -0.521 4.521 5 H 0.024 0.976 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.281 1.281 10 H -0.316 1.316 11 H -0.197 1.197 12 C 0.155 3.845 13 N -0.699 5.699 14 C 0.545 3.455 15 O -0.591 6.591 16 C -0.153 4.153 17 C -0.054 4.054 18 C -0.117 4.117 19 C -0.042 4.042 20 C -0.160 4.160 21 C 0.560 3.440 22 N -0.822 5.822 23 O -0.594 6.594 24 C -0.029 4.029 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.265 0.735 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.413 0.587 35 H 0.157 0.843 36 H 0.185 0.815 37 H 0.180 0.820 38 H 0.420 0.580 39 H 0.414 0.586 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.505 16.208 25.517 32.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.560 4.560 5 H 0.042 0.958 6 C -0.183 4.183 7 N -0.588 5.588 8 Si 0.776 3.224 9 H -0.208 1.208 10 H -0.246 1.246 11 H -0.120 1.120 12 C 0.031 3.969 13 N -0.352 5.352 14 C 0.334 3.666 15 O -0.473 6.473 16 C -0.156 4.156 17 C -0.072 4.072 18 C -0.134 4.134 19 C -0.060 4.060 20 C -0.163 4.163 21 C 0.346 3.654 22 N -0.387 5.387 23 O -0.476 6.476 24 C -0.049 4.049 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.252 0.748 35 H 0.174 0.826 36 H 0.202 0.798 37 H 0.198 0.802 38 H 0.254 0.746 39 H 0.247 0.753 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.592 14.877 25.308 30.884 hybrid contribution 0.260 -0.010 -0.839 0.878 sum -9.332 14.867 24.469 30.114 Atomic orbital electron populations 1.22239 0.95748 1.00756 1.01220 1.18649 0.94023 0.93222 0.91357 1.22314 1.01039 0.96580 1.00592 1.21037 1.33078 1.11109 0.90736 0.95805 1.25934 0.95362 1.01972 0.95065 1.70126 1.50671 1.38480 0.99474 0.86297 0.79490 0.79421 0.77189 1.20823 1.24551 1.12030 1.21107 0.97466 0.95113 0.83197 1.45894 1.52685 1.31955 1.04640 1.18825 0.79790 0.83658 0.84365 1.90763 1.40467 1.28584 1.87494 1.19770 1.04374 0.99711 0.91771 1.21935 0.91983 0.91285 1.02039 1.21602 1.00144 1.01268 0.90410 1.21981 0.91883 0.91807 1.00361 1.19846 1.04527 1.00027 0.91942 1.18436 0.78674 0.82294 0.85992 1.43484 1.54442 1.32890 1.07918 1.90838 1.40348 1.28558 1.87815 1.21217 0.94914 0.97545 0.91255 0.91045 0.93335 0.94219 0.93603 0.94364 0.90347 0.92653 0.93924 0.94133 0.74769 0.82553 0.79779 0.80232 0.74637 0.75344 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 7.53 71.98 0.54 -4.63 16 2 C 0.03 1.20 0.50 -52.93 -0.03 1.17 16 3 C -0.15 -5.32 7.52 71.98 0.54 -4.77 16 4 C -0.52 -28.85 8.62 25.60 0.22 -28.63 16 5 H 0.02 1.51 7.99 -2.91 -0.02 1.49 16 6 C 0.01 0.78 5.32 84.66 0.45 1.23 16 7 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 8 Si 0.95 41.64 22.79 68.60 1.56 43.20 16 9 H -0.28 -12.10 7.10 99.48 0.71 -11.39 16 10 H -0.32 -14.40 7.11 99.48 0.71 -13.70 16 11 H -0.20 -7.04 4.65 99.48 0.46 -6.58 16 12 C 0.15 6.29 4.49 86.38 0.39 6.68 16 13 N -0.70 -21.68 4.95 -465.96 -2.31 -23.99 16 14 C 0.55 18.59 7.77 86.79 0.67 19.27 16 15 O -0.59 -26.41 16.34 -3.88 -0.06 -26.47 16 16 C -0.15 -3.85 5.87 -20.12 -0.12 -3.96 16 17 C -0.05 -0.77 9.54 22.58 0.22 -0.55 16 18 C -0.12 -0.85 10.02 22.19 0.22 -0.63 16 19 C -0.04 -0.33 9.54 22.58 0.22 -0.12 16 20 C -0.16 -2.98 5.87 -20.12 -0.12 -3.10 16 21 C 0.56 11.30 8.05 86.79 0.70 12.00 16 22 N -0.82 -6.49 8.82 -175.59 -1.55 -8.04 16 23 O -0.59 -18.98 17.18 -3.87 -0.07 -19.04 16 24 C -0.03 -0.79 9.14 22.79 0.21 -0.58 16 25 H 0.07 1.88 7.13 -2.38 -0.02 1.86 16 26 H 0.05 1.86 4.30 -2.39 -0.01 1.84 16 27 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 28 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.42 2.25 -2.38 -0.01 1.41 16 30 H 0.08 2.03 6.86 -2.39 -0.02 2.01 16 31 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.41 9.40 4.28 -92.71 -0.40 9.01 16 35 H 0.16 1.46 6.39 -2.91 -0.02 1.44 16 36 H 0.18 -0.22 8.06 -2.91 -0.02 -0.25 16 37 H 0.18 -0.41 6.39 -2.91 -0.02 -0.43 16 38 H 0.42 -0.28 6.85 -92.71 -0.64 -0.91 16 39 H 0.41 2.50 8.93 -92.71 -0.83 1.67 16 40 H 0.11 3.78 7.23 -2.91 -0.02 3.76 16 Total: -1.00 -87.89 320.19 1.00 -86.89 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -0.99 Total: 12.81 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 4.11 Total: -6.64 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -3.56 Total: -90.75 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -0.13 Total: -45.51 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.56 Total: 43.20 kcal Total: -87.89 1.00 -86.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.817 kcal (2) G-P(sol) polarization free energy of solvation -87.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds