Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47565 * 76.21737 * 3 2 1 5 5 C 1.37103 * 119.99775 * 263.10249 * 4 3 2 6 6 H 1.08001 * 120.00003 * 193.73924 * 5 4 3 7 7 C 1.38950 * 119.99765 * 13.74202 * 5 4 3 8 8 N 1.31406 * 120.00683 * 15.88740 * 7 5 4 9 9 Si 1.86808 * 119.99629 * 195.89046 * 7 5 4 10 10 H 1.48495 * 109.47048 * 60.00027 * 9 7 5 11 11 H 1.48495 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47201 * 299.99909 * 9 7 5 13 13 C 1.34779 * 120.00453 * 83.09361 * 4 3 2 14 14 O 1.21288 * 119.99499 * 355.08894 * 13 4 3 15 15 C 1.50700 * 120.00140 * 175.08682 * 13 4 3 16 16 H 1.08999 * 109.46793 * 314.78139 * 15 13 4 17 17 C 1.52998 * 109.47094 * 74.77885 * 15 13 4 18 18 C 1.53003 * 109.46980 * 184.47491 * 17 15 13 19 19 C 1.50700 * 109.46783 * 194.78017 * 15 13 4 20 20 C 1.41381 * 128.00296 * 121.90121 * 19 15 13 21 21 C 1.50702 * 126.80600 * 359.97438 * 20 19 15 22 22 N 1.30179 * 106.39544 * 179.97438 * 20 19 15 23 23 O 1.20925 * 111.59917 * 0.02562 * 22 20 19 24 24 C 1.34041 * 111.57051 * 359.75965 * 23 22 20 25 25 C 1.50697 * 126.77502 * 180.29071 * 24 23 22 26 26 H 4.40643 * 5.51335 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.47514 * 316.21178 * 3 2 1 28 28 H 1.09004 * 109.47172 * 196.21556 * 3 2 1 29 29 H 0.97000 * 120.00440 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47422 * 304.47867 * 17 15 13 31 31 H 1.09004 * 109.46897 * 64.47415 * 17 15 13 32 32 H 1.08995 * 109.47236 * 299.99876 * 18 17 15 33 33 H 1.08993 * 109.46924 * 60.00324 * 18 17 15 34 34 H 1.08994 * 109.46733 * 180.02562 * 18 17 15 35 35 H 1.08997 * 109.47175 * 89.99578 * 21 20 19 36 36 H 1.08997 * 109.47222 * 209.99879 * 21 20 19 37 37 H 1.09002 * 109.47073 * 329.99628 * 21 20 19 38 38 H 1.08998 * 109.47306 * 275.84328 * 25 24 23 39 39 H 1.08998 * 109.47093 * 35.84800 * 25 24 23 40 40 H 1.09009 * 109.47046 * 155.84675 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.3282 -1.3414 5 6 3.4981 -1.6155 -1.6420 6 1 4.0600 -1.8220 -2.5409 7 6 3.1436 -2.6544 -0.7902 8 7 2.2136 -2.4700 0.1197 9 14 3.9892 -4.3135 -0.9384 10 1 5.4477 -4.1475 -0.7141 11 1 3.4354 -5.2439 0.0779 12 1 3.7571 -4.8679 -2.2963 13 6 3.2265 0.6347 -2.2800 14 8 2.8219 1.7532 -2.0429 15 6 3.8320 0.3215 -3.6240 16 1 4.7475 -0.2536 -3.4848 17 6 2.8384 -0.4943 -4.4534 18 6 3.4937 -0.9073 -5.7729 19 6 4.1506 1.6069 -4.3432 20 6 5.4041 2.0454 -4.8283 21 6 6.7169 1.3119 -4.7303 22 7 5.1996 3.2083 -5.3764 23 8 4.0387 3.5382 -5.3005 24 6 3.3015 2.6074 -4.6788 25 6 1.8206 2.6636 -4.4056 26 1 -1.0500 0.0002 -0.0001 27 1 3.0097 -0.7411 0.7111 28 1 3.0089 0.9876 0.2870 29 1 1.9664 -3.1952 0.7146 30 1 2.5469 -1.3856 -3.8979 31 1 1.9551 0.1101 -4.6599 32 1 3.7850 -0.0160 -6.3285 33 1 4.3769 -1.5117 -5.5664 34 1 2.7856 -1.4881 -6.3640 35 1 6.8449 0.6774 -5.6072 36 1 7.5331 2.0327 -4.6810 37 1 6.7223 0.6950 -3.8316 38 1 1.6413 3.2254 -3.4889 39 1 1.3161 3.1551 -5.2375 40 1 1.4331 1.6510 -4.2928 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490961619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = 83.970786 kcal Electronic energy + Delta-G solvation = -24280.172883 eV Core-core repulsion = 20872.543736 eV Total energy + Delta-G solvation = -3407.629147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.44385 -39.09884 -35.92611 -34.89989 -33.64239 -32.20080 -31.94967 -31.19536 -28.49314 -28.21674 -27.07561 -25.99056 -24.47485 -22.31849 -20.90145 -19.90804 -18.92391 -17.85588 -17.22489 -16.73959 -16.52277 -15.91535 -14.61322 -14.44979 -14.31823 -14.11265 -13.55773 -13.32706 -13.24338 -13.11136 -12.62996 -12.60462 -12.33141 -12.18958 -12.11630 -11.93266 -11.71452 -11.50490 -11.21979 -11.12109 -10.96852 -10.60892 -10.54561 -10.28972 -10.12429 -9.47223 -9.43662 -9.36303 -8.74758 -8.66062 -8.29411 -7.96667 -6.43838 -4.02222 1.97374 2.66117 3.04118 3.14504 3.14777 3.58225 3.66446 3.90169 4.06693 4.23262 4.57800 4.80737 4.91496 4.97282 5.29626 5.44493 5.52822 5.56172 5.65068 5.66164 5.70587 5.75625 5.88699 5.94668 6.06125 6.06943 6.19192 6.25714 6.35204 6.35994 6.50113 6.54124 6.67538 6.72046 6.88272 6.98735 7.16818 7.28445 7.59807 8.24473 8.72029 8.91861 8.95889 9.37050 9.77091 10.54019 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.006449 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.397936 B = 4340.391481 C = 5211.591003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.095 4.095 3 C 0.235 3.765 4 N -0.437 5.437 5 C -0.339 4.339 6 H 0.104 0.896 7 C 0.037 3.963 8 N -0.858 5.858 9 Si 0.918 3.082 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.464 3.536 14 O -0.593 6.593 15 C -0.009 4.009 16 H 0.095 0.905 17 C -0.116 4.116 18 C -0.145 4.145 19 C -0.172 4.172 20 C 0.022 3.978 21 C -0.074 4.074 22 N -0.382 5.382 23 O 0.082 5.918 24 C 0.001 3.999 25 C -0.062 4.062 26 H 0.197 0.803 27 H 0.123 0.877 28 H 0.059 0.941 29 H 0.271 0.729 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 1.502 -6.562 7.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.096 4.096 3 C 0.113 3.887 4 N -0.154 5.154 5 C -0.466 4.466 6 H 0.121 0.879 7 C -0.169 4.169 8 N -0.496 5.496 9 Si 0.745 3.255 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.253 3.747 14 O -0.479 6.479 15 C -0.031 4.031 16 H 0.113 0.887 17 C -0.154 4.154 18 C -0.202 4.202 19 C -0.177 4.177 20 C -0.137 4.137 21 C -0.131 4.131 22 N -0.090 5.090 23 O 0.020 5.980 24 C -0.062 4.062 25 C -0.119 4.119 26 H 0.214 0.786 27 H 0.141 0.859 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.729 2.805 -6.874 7.910 hybrid contribution -0.161 -1.743 0.456 1.809 sum 2.568 1.061 -6.417 6.993 Atomic orbital electron populations 1.24217 0.95364 1.07441 1.02945 1.23268 0.94397 0.94359 0.97613 1.18357 0.84065 0.99561 0.86697 1.43670 1.55315 1.07915 1.08521 1.19643 1.34648 0.81966 1.10356 0.87888 1.25243 0.95404 0.99672 0.96548 1.70057 1.25881 1.33406 1.20251 0.86128 0.79633 0.81417 0.78363 1.19795 1.20864 1.19758 1.19920 0.83935 0.85450 0.85442 1.90531 1.53915 1.22953 1.80469 1.19335 1.00257 0.91041 0.92478 0.88694 1.21583 0.97391 1.00863 0.95569 1.21739 1.00587 1.00628 0.97255 1.20472 0.91634 0.99557 1.06012 1.23339 0.97635 0.93016 0.99723 1.20128 0.90618 0.99105 1.03258 1.73745 0.96950 1.15860 1.22480 1.84700 1.13810 1.40408 1.59117 1.24111 0.96928 0.88596 0.96574 1.20377 0.84496 1.04741 1.02317 0.78587 0.85948 0.92278 0.91819 0.88866 0.91991 0.93464 0.92731 0.92998 0.90517 0.90999 0.89977 0.88614 0.91672 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.15 19.25 29.55 0.57 -5.58 16 2 C -0.09 -2.26 11.88 -37.13 -0.44 -2.70 16 3 C 0.24 5.51 5.03 -6.83 -0.03 5.48 16 4 N -0.44 -10.18 2.61 -117.93 -0.31 -10.49 16 5 C -0.34 -7.76 7.99 -14.93 -0.12 -7.88 16 6 H 0.10 2.20 5.59 -52.49 -0.29 1.90 16 7 C 0.04 0.84 5.07 -17.47 -0.09 0.76 16 8 N -0.86 -20.92 9.13 55.50 0.51 -20.41 16 9 Si 0.92 18.12 29.58 -169.99 -5.03 13.09 16 10 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 13 C 0.46 10.33 6.61 -10.98 -0.07 10.26 16 14 O -0.59 -14.26 13.00 5.55 0.07 -14.18 16 15 C -0.01 -0.17 1.58 -92.92 -0.15 -0.32 16 16 H 0.10 1.71 6.29 -51.93 -0.33 1.38 16 17 C -0.12 -1.98 5.01 -26.73 -0.13 -2.11 16 18 C -0.14 -2.05 9.72 37.16 0.36 -1.69 16 19 C -0.17 -3.13 3.68 -104.42 -0.38 -3.51 16 20 C 0.02 0.37 7.33 -82.10 -0.60 -0.23 16 21 C -0.07 -0.99 10.26 36.01 0.37 -0.62 16 22 N -0.38 -6.97 12.07 33.42 0.40 -6.57 16 23 O 0.08 1.48 11.20 17.17 0.19 1.67 16 24 C 0.00 0.02 6.85 -35.31 -0.24 -0.22 16 25 C -0.06 -0.99 8.67 36.00 0.31 -0.67 16 26 H 0.20 3.50 7.80 -54.09 -0.42 3.08 16 27 H 0.12 2.93 5.88 -51.93 -0.31 2.63 16 28 H 0.06 1.35 7.71 -51.93 -0.40 0.95 16 29 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 30 H 0.09 1.75 6.32 -51.93 -0.33 1.42 16 31 H 0.06 1.05 5.39 -51.93 -0.28 0.77 16 32 H 0.05 0.67 7.36 -51.93 -0.38 0.29 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.07 7.52 -51.93 -0.39 0.68 16 38 H 0.10 1.65 7.40 -51.93 -0.38 1.26 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.49 5.27 -51.92 -0.27 1.22 16 LS Contribution 329.39 15.07 4.96 4.96 Total: -1.00 -27.75 329.39 -4.89 -32.64 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.04 Total: 8.34 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.65 Total: -9.05 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.60 Total: -37.47 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.26 Total: -12.51 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.75 -4.89 -32.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.609 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds