Wall clock time and date at job start Tue Mar 31 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47565 * 76.21737 * 3 2 1 5 5 C 1.37103 * 119.99775 * 263.10249 * 4 3 2 6 6 H 1.08001 * 120.00003 * 193.73924 * 5 4 3 7 7 C 1.38950 * 119.99765 * 13.74202 * 5 4 3 8 8 N 1.31406 * 120.00683 * 15.88740 * 7 5 4 9 9 Si 1.86808 * 119.99629 * 195.89046 * 7 5 4 10 10 H 1.48495 * 109.47048 * 60.00027 * 9 7 5 11 11 H 1.48495 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47201 * 299.99909 * 9 7 5 13 13 C 1.34779 * 120.00453 * 83.09361 * 4 3 2 14 14 O 1.21288 * 119.99499 * 355.08894 * 13 4 3 15 15 C 1.50700 * 120.00140 * 175.08682 * 13 4 3 16 16 H 1.08999 * 109.46793 * 314.78139 * 15 13 4 17 17 C 1.52998 * 109.47094 * 74.77885 * 15 13 4 18 18 C 1.53003 * 109.46980 * 184.47491 * 17 15 13 19 19 C 1.50700 * 109.46783 * 194.78017 * 15 13 4 20 20 C 1.41381 * 128.00296 * 121.90121 * 19 15 13 21 21 C 1.50702 * 126.80600 * 359.97438 * 20 19 15 22 22 N 1.30179 * 106.39544 * 179.97438 * 20 19 15 23 23 O 1.20925 * 111.59917 * 0.02562 * 22 20 19 24 24 C 1.34041 * 111.57051 * 359.75965 * 23 22 20 25 25 C 1.50697 * 126.77502 * 180.29071 * 24 23 22 26 26 H 4.40643 * 5.51335 * 180.02562 * 4 1 2 27 27 H 1.09004 * 109.47514 * 316.21178 * 3 2 1 28 28 H 1.09004 * 109.47172 * 196.21556 * 3 2 1 29 29 H 0.97000 * 120.00440 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47422 * 304.47867 * 17 15 13 31 31 H 1.09004 * 109.46897 * 64.47415 * 17 15 13 32 32 H 1.08995 * 109.47236 * 299.99876 * 18 17 15 33 33 H 1.08993 * 109.46924 * 60.00324 * 18 17 15 34 34 H 1.08994 * 109.46733 * 180.02562 * 18 17 15 35 35 H 1.08997 * 109.47175 * 89.99578 * 21 20 19 36 36 H 1.08997 * 109.47222 * 209.99879 * 21 20 19 37 37 H 1.09002 * 109.47073 * 329.99628 * 21 20 19 38 38 H 1.08998 * 109.47306 * 275.84328 * 25 24 23 39 39 H 1.08998 * 109.47093 * 35.84800 * 25 24 23 40 40 H 1.09009 * 109.47046 * 155.84675 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.3282 -1.3414 5 6 3.4981 -1.6155 -1.6420 6 1 4.0600 -1.8220 -2.5409 7 6 3.1436 -2.6544 -0.7902 8 7 2.2136 -2.4700 0.1197 9 14 3.9892 -4.3135 -0.9384 10 1 5.4477 -4.1475 -0.7141 11 1 3.4354 -5.2439 0.0779 12 1 3.7571 -4.8679 -2.2963 13 6 3.2265 0.6347 -2.2800 14 8 2.8219 1.7532 -2.0429 15 6 3.8320 0.3215 -3.6240 16 1 4.7475 -0.2536 -3.4848 17 6 2.8384 -0.4943 -4.4534 18 6 3.4937 -0.9073 -5.7729 19 6 4.1506 1.6069 -4.3432 20 6 5.4041 2.0454 -4.8283 21 6 6.7169 1.3119 -4.7303 22 7 5.1996 3.2083 -5.3764 23 8 4.0387 3.5382 -5.3005 24 6 3.3015 2.6074 -4.6788 25 6 1.8206 2.6636 -4.4056 26 1 -1.0500 0.0002 -0.0001 27 1 3.0097 -0.7411 0.7111 28 1 3.0089 0.9876 0.2870 29 1 1.9664 -3.1952 0.7146 30 1 2.5469 -1.3856 -3.8979 31 1 1.9551 0.1101 -4.6599 32 1 3.7850 -0.0160 -6.3285 33 1 4.3769 -1.5117 -5.5664 34 1 2.7856 -1.4881 -6.3640 35 1 6.8449 0.6774 -5.6072 36 1 7.5331 2.0327 -4.6810 37 1 6.7223 0.6950 -3.8316 38 1 1.6413 3.2254 -3.4889 39 1 1.3161 3.1551 -5.2375 40 1 1.4331 1.6510 -4.2928 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490961619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:53 Heat of formation + Delta-G solvation = 70.374186 kcal Electronic energy + Delta-G solvation = -24280.762476 eV Core-core repulsion = 20872.543736 eV Total energy + Delta-G solvation = -3408.218739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.80606 -40.79452 -37.48412 -36.56993 -34.95891 -33.74519 -33.61486 -32.85278 -29.79743 -29.49424 -28.59804 -27.56830 -26.19508 -23.65113 -22.34281 -21.34426 -20.53571 -19.53262 -18.62865 -18.32027 -18.13006 -17.48268 -16.22565 -16.09404 -15.91276 -15.67487 -14.94171 -14.76803 -14.66550 -14.23137 -13.98420 -13.91525 -13.82468 -13.65002 -13.57750 -13.32898 -13.20747 -12.90580 -12.70371 -12.61876 -12.35304 -12.21507 -12.12294 -11.67377 -11.48471 -11.16825 -11.15607 -10.78652 -10.54815 -10.22159 -9.90153 -9.72796 -8.19223 -5.82673 0.59211 1.29746 1.47591 1.54658 1.61490 1.94348 2.15002 2.25516 2.37846 2.44058 3.15954 3.21085 3.31765 3.64746 3.88552 3.94539 4.10702 4.24162 4.28357 4.35223 4.51306 4.62031 4.69069 4.70331 4.71721 4.78632 4.85140 4.92717 5.03867 5.05721 5.12100 5.15077 5.26825 5.32994 5.35924 5.44910 5.47820 5.58534 5.83710 6.45723 7.13925 7.18258 7.35238 7.61689 8.01389 8.78584 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.006449 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.397936 B = 4340.391481 C = 5211.591003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.141 4.141 3 C 0.238 3.762 4 N -0.447 5.447 5 C -0.347 4.347 6 H 0.118 0.882 7 C -0.004 4.004 8 N -0.886 5.886 9 Si 0.981 3.019 10 H -0.267 1.267 11 H -0.291 1.291 12 H -0.264 1.264 13 C 0.456 3.544 14 O -0.617 6.617 15 C 0.002 3.998 16 H 0.102 0.898 17 C -0.111 4.111 18 C -0.136 4.136 19 C -0.189 4.189 20 C 0.023 3.977 21 C -0.075 4.075 22 N -0.397 5.397 23 O 0.074 5.926 24 C -0.003 4.003 25 C -0.058 4.058 26 H 0.234 0.766 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.268 0.732 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 0.506 -8.061 8.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.142 4.142 3 C 0.115 3.885 4 N -0.164 5.164 5 C -0.474 4.474 6 H 0.136 0.864 7 C -0.206 4.206 8 N -0.524 5.524 9 Si 0.806 3.194 10 H -0.192 1.192 11 H -0.217 1.217 12 H -0.189 1.189 13 C 0.246 3.754 14 O -0.504 6.504 15 C -0.020 4.020 16 H 0.120 0.880 17 C -0.149 4.149 18 C -0.193 4.193 19 C -0.194 4.194 20 C -0.136 4.136 21 C -0.132 4.132 22 N -0.108 5.108 23 O 0.014 5.986 24 C -0.066 4.066 25 C -0.115 4.115 26 H 0.250 0.750 27 H 0.130 0.870 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.261 1.820 -8.388 9.181 hybrid contribution -0.387 -1.368 0.955 1.712 sum 2.874 0.452 -7.432 7.981 Atomic orbital electron populations 1.25123 0.96382 1.05633 1.01219 1.23629 0.95195 0.96052 0.99310 1.18216 0.84474 0.98750 0.87039 1.43879 1.55497 1.08479 1.08594 1.20005 1.34625 0.81849 1.10929 0.86441 1.26003 0.95689 1.02648 0.96231 1.70188 1.27112 1.34062 1.21027 0.85153 0.78663 0.77380 0.78244 1.19174 1.21738 1.18869 1.20609 0.83462 0.84904 0.86466 1.90509 1.54851 1.23852 1.81174 1.19235 1.00518 0.91669 0.90541 0.87982 1.21529 0.97195 0.99601 0.96577 1.21666 1.01169 1.00925 0.95541 1.20549 0.92402 0.99699 1.06706 1.23891 0.98684 0.92589 0.98387 1.20304 0.88967 0.99424 1.04512 1.73735 0.97052 1.16504 1.23543 1.84683 1.13932 1.40528 1.59418 1.24453 0.97648 0.88518 0.96014 1.20360 0.83892 1.04357 1.02877 0.74993 0.87009 0.92904 0.92235 0.90733 0.92317 0.93515 0.91642 0.91389 0.88127 0.89908 0.89625 0.90245 0.88281 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.45 19.25 74.32 1.43 -10.02 16 2 C -0.14 -6.77 11.88 31.12 0.37 -6.40 16 3 C 0.24 11.45 5.03 84.57 0.43 11.88 16 4 N -0.45 -21.05 2.61 -645.42 -1.68 -22.74 16 5 C -0.35 -15.77 7.99 84.04 0.67 -15.10 16 6 H 0.12 4.86 5.59 -2.91 -0.02 4.84 16 7 C 0.00 -0.16 5.07 84.93 0.43 0.27 16 8 N -0.89 -43.50 9.13 21.66 0.20 -43.31 16 9 Si 0.98 36.44 29.58 68.60 2.03 38.47 16 10 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 11 H -0.29 -11.14 7.11 99.48 0.71 -10.43 16 12 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 13 C 0.46 20.40 6.61 87.66 0.58 20.98 16 14 O -0.62 -30.14 13.00 -3.05 -0.04 -30.18 16 15 C 0.00 0.07 1.58 -12.29 -0.02 0.05 16 16 H 0.10 3.52 6.29 -2.39 -0.02 3.50 16 17 C -0.11 -3.64 5.01 30.59 0.15 -3.48 16 18 C -0.14 -3.49 9.72 71.98 0.70 -2.79 16 19 C -0.19 -6.68 3.68 -19.74 -0.07 -6.75 16 20 C 0.02 0.77 7.33 43.58 0.32 1.09 16 21 C -0.07 -1.82 10.26 71.24 0.73 -1.09 16 22 N -0.40 -14.06 12.07 -49.55 -0.60 -14.66 16 23 O 0.07 2.62 11.20 71.63 0.80 3.42 16 24 C 0.00 -0.11 6.85 25.04 0.17 0.06 16 25 C -0.06 -1.80 8.67 71.23 0.62 -1.19 16 26 H 0.23 7.79 7.80 -4.42 -0.03 7.75 16 27 H 0.11 5.56 5.88 -2.39 -0.01 5.54 16 28 H 0.05 2.52 7.71 -2.39 -0.02 2.50 16 29 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 30 H 0.07 2.73 6.32 -2.39 -0.02 2.71 16 31 H 0.06 1.94 5.39 -2.38 -0.01 1.92 16 32 H 0.05 1.21 7.36 -2.39 -0.02 1.19 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.03 7.52 -2.39 -0.02 2.01 16 38 H 0.08 2.76 7.40 -2.39 -0.02 2.74 16 39 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.08 2.69 5.27 -2.38 -0.01 2.68 16 Total: -1.00 -59.25 329.39 8.28 -50.97 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 1.06 Total: 30.51 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 6.51 Total: -12.50 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -2.08 Total: -80.70 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: 0.76 Total: -26.76 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -59.25 8.28 -50.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.347 kcal (2) G-P(sol) polarization free energy of solvation -59.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds