Wall clock time and date at job start Tue Mar 31 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47573 * 22.04576 * 3 2 1 5 5 C 1.36682 * 119.99423 * 270.00198 * 4 3 2 6 6 H 1.08003 * 120.00130 * 137.35209 * 5 4 3 7 7 C 1.39158 * 119.99981 * 317.34119 * 5 4 3 8 8 N 1.31297 * 119.99681 * 167.63424 * 7 5 4 9 9 Si 1.86799 * 120.00141 * 347.64414 * 7 5 4 10 10 H 1.48495 * 109.47510 * 92.00662 * 9 7 5 11 11 H 1.48500 * 109.46945 * 212.00810 * 9 7 5 12 12 H 1.48503 * 109.47080 * 332.00455 * 9 7 5 13 13 C 1.34769 * 120.00254 * 89.99088 * 4 3 2 14 14 O 1.21650 * 120.00252 * 5.29079 * 13 4 3 15 15 C 1.47292 * 120.00390 * 185.28480 * 13 4 3 16 16 C 1.36989 * 126.96270 * 185.01230 * 15 13 4 17 17 C 1.41178 * 103.84292 * 180.11136 * 16 15 13 18 18 C 1.50690 * 126.69619 * 179.91325 * 17 16 15 19 19 C 1.53003 * 109.47212 * 84.71195 * 18 17 16 20 20 C 1.52999 * 109.47457 * 175.06306 * 19 18 17 21 21 C 1.53001 * 109.47140 * 324.71156 * 18 17 16 22 22 C 1.52997 * 109.47402 * 294.20948 * 21 18 17 23 23 N 1.30178 * 106.60779 * 359.65270 * 17 16 15 24 24 O 1.20883 * 112.01513 * 0.22263 * 23 17 16 25 25 H 4.40643 * 5.51290 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47249 * 262.04091 * 3 2 1 27 27 H 1.09007 * 109.47107 * 142.04185 * 3 2 1 28 28 H 0.97000 * 119.99437 * 179.97438 * 8 7 5 29 29 H 1.08002 * 128.08053 * 0.02882 * 16 15 13 30 30 H 1.08998 * 109.47426 * 204.71236 * 18 17 16 31 31 H 1.09003 * 109.46905 * 295.05830 * 19 18 17 32 32 H 1.08994 * 109.47182 * 55.06076 * 19 18 17 33 33 H 1.09002 * 109.46680 * 306.27096 * 20 19 18 34 34 H 1.09000 * 109.47033 * 66.26212 * 20 19 18 35 35 H 1.08994 * 109.47561 * 186.27052 * 20 19 18 36 36 H 1.08998 * 109.46993 * 54.21519 * 21 18 17 37 37 H 1.09001 * 109.47200 * 174.20878 * 21 18 17 38 38 H 1.08996 * 109.47338 * 175.77705 * 22 21 18 39 39 H 1.08997 * 109.46919 * 295.78205 * 22 21 18 40 40 H 1.09009 * 109.46722 * 55.77783 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.2793 -0.5184 5 6 3.3633 -2.3207 0.3370 6 1 3.0550 -3.3197 0.0660 7 6 3.9931 -2.0937 1.5569 8 7 3.9977 -3.0299 2.4775 9 14 4.8319 -0.4572 1.8849 10 1 3.8725 0.4686 2.5388 11 1 6.0004 -0.6698 2.7763 12 1 5.2897 0.1306 0.6003 13 6 3.3596 -1.4301 -1.8387 14 8 3.2492 -0.4775 -2.5872 15 6 3.7390 -2.7482 -2.3755 16 6 4.0911 -3.0416 -3.6664 17 6 4.3520 -4.4288 -3.6384 18 6 4.7816 -5.2879 -4.7996 19 6 6.3011 -5.2069 -4.9593 20 6 6.7507 -6.1727 -6.0575 21 6 4.1070 -4.7899 -6.0794 22 6 2.5957 -5.0049 -5.9763 23 7 4.1547 -4.8199 -2.4126 24 8 3.8149 -3.9081 -1.6952 25 1 -1.0497 -0.0003 -0.0003 26 1 3.0093 0.1431 1.0177 27 1 3.0090 0.8111 -0.6321 28 1 4.4370 -2.8718 3.3277 29 1 4.1531 -2.3691 -4.5092 30 1 4.4903 -6.3217 -4.6140 31 1 6.5841 -4.1901 -5.2315 32 1 6.7802 -5.4780 -4.0186 33 1 6.3714 -7.1713 -5.8407 34 1 6.3610 -5.8369 -7.0185 35 1 7.8397 -6.1980 -6.0957 36 1 4.3149 -3.7280 -6.2101 37 1 4.4953 -5.3440 -6.9340 38 1 2.1078 -4.5826 -6.8547 39 1 2.3836 -6.0726 -5.9209 40 1 2.2191 -4.5127 -5.0795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490994565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:30 Heat of formation + Delta-G solvation = 81.089055 kcal Electronic energy + Delta-G solvation = -23287.059710 eV Core-core repulsion = 19879.305602 eV Total energy + Delta-G solvation = -3407.754108 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.22813 -39.01218 -37.41808 -35.53154 -32.85995 -32.69894 -31.91804 -31.68289 -31.04303 -27.24499 -26.87303 -25.24931 -23.11707 -22.56251 -22.36239 -20.49649 -19.09833 -18.73779 -17.65068 -16.91479 -16.14689 -15.90181 -15.49315 -14.98842 -14.65577 -14.47657 -14.17337 -13.97013 -13.56448 -13.26865 -13.16322 -12.83786 -12.57368 -12.48479 -12.16460 -12.09788 -11.70159 -11.37633 -11.18993 -11.07836 -11.01207 -10.81089 -10.60242 -10.42234 -10.32772 -9.92983 -9.65159 -9.48813 -9.42883 -9.04402 -8.97178 -8.13690 -6.60941 -4.31343 1.58439 2.62302 2.91588 3.07010 3.11934 3.13573 3.41162 3.66566 3.82831 3.96303 4.30626 4.40886 4.70014 4.78390 4.92542 5.02242 5.15533 5.18371 5.29280 5.37298 5.41018 5.64234 5.68686 5.72646 5.80656 5.83292 5.88830 5.90433 5.93319 6.03496 6.07723 6.15432 6.25180 6.29326 6.38662 6.41547 6.50613 7.06454 7.80620 8.14230 8.15400 8.56279 8.87143 9.06037 9.28948 10.47840 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.004947 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.817110 B = 5659.125805 C = 6377.995549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.170 4.170 3 C 0.199 3.801 4 N -0.437 5.437 5 C -0.352 4.352 6 H 0.123 0.877 7 C 0.074 3.926 8 N -0.843 5.843 9 Si 0.872 3.128 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.256 1.256 13 C 0.552 3.448 14 O -0.571 6.571 15 C -0.027 4.027 16 C -0.189 4.189 17 C 0.008 3.992 18 C -0.005 4.005 19 C -0.117 4.117 20 C -0.150 4.150 21 C -0.116 4.116 22 C -0.154 4.154 23 N -0.368 5.368 24 O 0.150 5.850 25 H 0.214 0.786 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.280 0.720 29 H 0.170 0.830 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 -1.595 -11.611 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.171 4.171 3 C 0.078 3.922 4 N -0.155 5.155 5 C -0.479 4.479 6 H 0.140 0.860 7 C -0.136 4.136 8 N -0.477 5.477 9 Si 0.699 3.301 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.180 1.180 13 C 0.341 3.659 14 O -0.456 6.456 15 C -0.093 4.093 16 C -0.212 4.212 17 C -0.149 4.149 18 C -0.024 4.024 19 C -0.155 4.155 20 C -0.208 4.208 21 C -0.154 4.154 22 C -0.211 4.211 23 N -0.068 5.068 24 O 0.078 5.922 25 H 0.231 0.769 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.187 0.813 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.363 -2.398 -11.136 11.473 hybrid contribution 0.182 1.278 0.070 1.293 sum 1.545 -1.120 -11.066 11.229 Atomic orbital electron populations 1.24682 0.95621 1.00811 1.02306 1.23485 0.94647 0.99812 0.99152 1.18765 0.84254 0.88778 1.00410 1.43538 1.54482 1.11874 1.05649 1.19438 1.39883 0.89316 0.99286 0.85983 1.25430 0.94963 0.97869 0.95332 1.69613 1.38976 1.33931 1.05184 0.87002 0.79865 0.83452 0.79757 1.19399 1.20697 1.17966 1.16835 0.81459 0.84514 0.83105 1.90726 1.57813 1.38351 1.58689 1.24090 1.04383 0.89349 0.91499 1.22511 1.06317 0.95169 0.97239 1.23283 1.04321 0.93434 0.93900 1.19578 0.95229 0.97753 0.89829 1.21551 0.93970 1.00404 0.99580 1.21810 1.00950 0.99362 0.98642 1.21612 0.95656 1.01849 0.96289 1.21795 0.95782 1.01519 1.02027 1.73724 1.15582 1.13717 1.03796 1.85409 1.61343 1.12202 1.33248 0.76887 0.89065 0.88057 0.90933 0.81283 0.89715 0.91444 0.91614 0.92655 0.92438 0.92682 0.91361 0.91036 0.92721 0.92912 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.90 19.25 29.55 0.57 -3.33 16 2 C -0.17 -3.56 13.67 -37.12 -0.51 -4.06 16 3 C 0.20 4.36 4.61 -6.83 -0.03 4.33 16 4 N -0.44 -10.54 2.09 -119.22 -0.25 -10.79 16 5 C -0.35 -9.13 8.66 -15.05 -0.13 -9.26 16 6 H 0.12 3.40 5.92 -52.48 -0.31 3.08 16 7 C 0.07 1.91 5.43 -17.44 -0.09 1.82 16 8 N -0.84 -22.79 13.95 55.51 0.77 -22.02 16 9 Si 0.87 19.36 24.75 -169.99 -4.21 15.16 16 10 H -0.27 -5.59 6.70 56.52 0.38 -5.21 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 12 H -0.26 -5.64 7.06 56.52 0.40 -5.24 16 13 C 0.55 13.08 7.61 -12.58 -0.10 12.98 16 14 O -0.57 -13.92 16.47 5.23 0.09 -13.83 16 15 C -0.03 -0.59 6.94 -36.36 -0.25 -0.84 16 16 C -0.19 -3.47 9.75 -38.92 -0.38 -3.85 16 17 C 0.01 0.13 5.25 -82.18 -0.43 -0.30 16 18 C 0.00 -0.06 2.32 -91.77 -0.21 -0.27 16 19 C -0.12 -1.36 5.38 -26.73 -0.14 -1.51 16 20 C -0.15 -1.36 9.52 37.16 0.35 -1.01 16 21 C -0.12 -1.27 5.02 -26.73 -0.13 -1.40 16 22 C -0.15 -1.77 9.80 37.16 0.36 -1.41 16 23 N -0.37 -7.60 12.04 33.53 0.40 -7.20 16 24 O 0.15 3.41 8.18 15.44 0.13 3.53 16 25 H 0.21 2.83 7.80 -54.11 -0.42 2.41 16 26 H 0.09 1.98 3.11 -51.93 -0.16 1.82 16 27 H 0.10 2.08 7.35 -51.92 -0.38 1.70 16 28 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.17 2.74 7.51 -52.49 -0.39 2.35 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.46 6.75 -51.93 -0.35 0.11 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.75 7.18 -51.93 -0.37 0.38 16 37 H 0.07 0.64 6.45 -51.93 -0.33 0.30 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.81 7.00 -51.92 -0.36 0.44 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -29.01 335.92 -4.34 -33.35 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.21 Total: 4.85 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -1.13 Total: -8.11 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.93 Total: -40.01 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.21 Total: -10.30 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.21 Total: 15.16 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.01 -4.34 -33.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.437 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds