Wall clock time and date at job start Tue Mar 31 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47573 * 22.04576 * 3 2 1 5 5 C 1.36682 * 119.99423 * 270.00198 * 4 3 2 6 6 H 1.08003 * 120.00130 * 137.35209 * 5 4 3 7 7 C 1.39158 * 119.99981 * 317.34119 * 5 4 3 8 8 N 1.31297 * 119.99681 * 167.63424 * 7 5 4 9 9 Si 1.86799 * 120.00141 * 347.64414 * 7 5 4 10 10 H 1.48495 * 109.47510 * 92.00662 * 9 7 5 11 11 H 1.48500 * 109.46945 * 212.00810 * 9 7 5 12 12 H 1.48503 * 109.47080 * 332.00455 * 9 7 5 13 13 C 1.34769 * 120.00254 * 89.99088 * 4 3 2 14 14 O 1.21650 * 120.00252 * 5.29079 * 13 4 3 15 15 C 1.47292 * 120.00390 * 185.28480 * 13 4 3 16 16 C 1.36989 * 126.96270 * 185.01230 * 15 13 4 17 17 C 1.41178 * 103.84292 * 180.11136 * 16 15 13 18 18 C 1.50690 * 126.69619 * 179.91325 * 17 16 15 19 19 C 1.53003 * 109.47212 * 84.71195 * 18 17 16 20 20 C 1.52999 * 109.47457 * 175.06306 * 19 18 17 21 21 C 1.53001 * 109.47140 * 324.71156 * 18 17 16 22 22 C 1.52997 * 109.47402 * 294.20948 * 21 18 17 23 23 N 1.30178 * 106.60779 * 359.65270 * 17 16 15 24 24 O 1.20883 * 112.01513 * 0.22263 * 23 17 16 25 25 H 4.40643 * 5.51290 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47249 * 262.04091 * 3 2 1 27 27 H 1.09007 * 109.47107 * 142.04185 * 3 2 1 28 28 H 0.97000 * 119.99437 * 179.97438 * 8 7 5 29 29 H 1.08002 * 128.08053 * 0.02882 * 16 15 13 30 30 H 1.08998 * 109.47426 * 204.71236 * 18 17 16 31 31 H 1.09003 * 109.46905 * 295.05830 * 19 18 17 32 32 H 1.08994 * 109.47182 * 55.06076 * 19 18 17 33 33 H 1.09002 * 109.46680 * 306.27096 * 20 19 18 34 34 H 1.09000 * 109.47033 * 66.26212 * 20 19 18 35 35 H 1.08994 * 109.47561 * 186.27052 * 20 19 18 36 36 H 1.08998 * 109.46993 * 54.21519 * 21 18 17 37 37 H 1.09001 * 109.47200 * 174.20878 * 21 18 17 38 38 H 1.08996 * 109.47338 * 175.77705 * 22 21 18 39 39 H 1.08997 * 109.46919 * 295.78205 * 22 21 18 40 40 H 1.09009 * 109.46722 * 55.77783 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.2793 -0.5184 5 6 3.3633 -2.3207 0.3370 6 1 3.0550 -3.3197 0.0660 7 6 3.9931 -2.0937 1.5569 8 7 3.9977 -3.0299 2.4775 9 14 4.8319 -0.4572 1.8849 10 1 3.8725 0.4686 2.5388 11 1 6.0004 -0.6698 2.7763 12 1 5.2897 0.1306 0.6003 13 6 3.3596 -1.4301 -1.8387 14 8 3.2492 -0.4775 -2.5872 15 6 3.7390 -2.7482 -2.3755 16 6 4.0911 -3.0416 -3.6664 17 6 4.3520 -4.4288 -3.6384 18 6 4.7816 -5.2879 -4.7996 19 6 6.3011 -5.2069 -4.9593 20 6 6.7507 -6.1727 -6.0575 21 6 4.1070 -4.7899 -6.0794 22 6 2.5957 -5.0049 -5.9763 23 7 4.1547 -4.8199 -2.4126 24 8 3.8149 -3.9081 -1.6952 25 1 -1.0497 -0.0003 -0.0003 26 1 3.0093 0.1431 1.0177 27 1 3.0090 0.8111 -0.6321 28 1 4.4370 -2.8718 3.3277 29 1 4.1531 -2.3691 -4.5092 30 1 4.4903 -6.3217 -4.6140 31 1 6.5841 -4.1901 -5.2315 32 1 6.7802 -5.4780 -4.0186 33 1 6.3714 -7.1713 -5.8407 34 1 6.3610 -5.8369 -7.0185 35 1 7.8397 -6.1980 -6.0957 36 1 4.3149 -3.7280 -6.2101 37 1 4.4953 -5.3440 -6.9340 38 1 2.1078 -4.5826 -6.8547 39 1 2.3836 -6.0726 -5.9209 40 1 2.2191 -4.5127 -5.0795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490994565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:30 Heat of formation + Delta-G solvation = 64.571921 kcal Electronic energy + Delta-G solvation = -23287.775947 eV Core-core repulsion = 19879.305602 eV Total energy + Delta-G solvation = -3408.470344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.80138 -40.84798 -38.50772 -37.36093 -34.59550 -34.08892 -33.70946 -32.71387 -32.52059 -28.88492 -27.91458 -27.18576 -24.51129 -23.98589 -23.48261 -21.81122 -20.71858 -20.38612 -19.20087 -18.52184 -17.87230 -17.57797 -17.20670 -16.54165 -16.09832 -15.54625 -15.44341 -15.10525 -15.03987 -15.00856 -14.56597 -14.47951 -14.13385 -13.99489 -13.45468 -13.00802 -12.89218 -12.73324 -12.63676 -12.33551 -12.31003 -12.06403 -12.02658 -11.63485 -11.57292 -11.45678 -11.38403 -11.06372 -10.88921 -10.85673 -10.63071 -10.04164 -8.57994 -6.33470 -0.11024 1.13814 1.17260 1.28223 1.37118 1.49855 1.87614 1.99944 2.02383 2.14616 2.69807 2.86719 3.08834 3.51547 3.53783 3.88000 3.98384 4.05194 4.12543 4.16582 4.26397 4.36244 4.38476 4.46570 4.55912 4.64857 4.75215 4.90577 4.99987 5.00710 5.02295 5.09128 5.22229 5.23602 5.25067 5.32624 5.45114 5.48787 5.90624 6.10506 6.65022 6.68478 7.02073 7.29166 7.38765 8.54704 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.004947 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.817110 B = 5659.125805 C = 6377.995549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.238 4.238 3 C 0.196 3.804 4 N -0.446 5.446 5 C -0.355 4.355 6 H 0.092 0.908 7 C 0.034 3.966 8 N -0.886 5.886 9 Si 0.924 3.076 10 H -0.245 1.245 11 H -0.276 1.276 12 H -0.256 1.256 13 C 0.552 3.448 14 O -0.582 6.582 15 C -0.060 4.060 16 C -0.167 4.167 17 C 0.030 3.970 18 C -0.006 4.006 19 C -0.115 4.115 20 C -0.145 4.145 21 C -0.111 4.111 22 C -0.155 4.155 23 N -0.391 5.391 24 O 0.112 5.888 25 H 0.260 0.740 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.285 0.715 29 H 0.195 0.805 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 -0.974 -13.911 13.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.239 4.239 3 C 0.076 3.924 4 N -0.165 5.165 5 C -0.482 4.482 6 H 0.110 0.890 7 C -0.172 4.172 8 N -0.521 5.521 9 Si 0.748 3.252 10 H -0.170 1.170 11 H -0.202 1.202 12 H -0.180 1.180 13 C 0.341 3.659 14 O -0.467 6.467 15 C -0.126 4.126 16 C -0.189 4.189 17 C -0.128 4.128 18 C -0.025 4.025 19 C -0.153 4.153 20 C -0.202 4.202 21 C -0.149 4.149 22 C -0.212 4.212 23 N -0.097 5.097 24 O 0.046 5.954 25 H 0.276 0.724 26 H 0.108 0.892 27 H 0.127 0.873 28 H 0.095 0.905 29 H 0.212 0.788 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.296 -1.742 -13.404 13.579 hybrid contribution 0.108 0.993 0.618 1.174 sum 1.405 -0.749 -12.787 12.885 Atomic orbital electron populations 1.25752 0.96513 0.97539 0.99094 1.23656 0.95267 1.02821 1.02158 1.18774 0.85569 0.87750 1.00321 1.43596 1.55049 1.12264 1.05566 1.19182 1.40338 0.88958 0.99757 0.89032 1.26045 0.95170 1.01118 0.94877 1.69696 1.40459 1.36027 1.05931 0.86171 0.79318 0.79967 0.79721 1.17013 1.20237 1.18002 1.17074 0.80746 0.85122 0.82995 1.90691 1.58299 1.38949 1.58787 1.24134 1.06596 0.89011 0.92869 1.22903 1.03729 0.95873 0.96424 1.24034 1.01355 0.93538 0.93922 1.19872 0.96558 0.97025 0.89073 1.21544 0.92438 1.01528 0.99814 1.21781 1.01584 0.98660 0.98173 1.21646 0.94902 1.02522 0.95816 1.21811 0.96403 1.01741 1.01266 1.73725 1.16983 1.13739 1.05228 1.85387 1.63016 1.12685 1.34339 0.72372 0.89237 0.87345 0.90465 0.78787 0.89517 0.91085 0.93662 0.92350 0.90623 0.91864 0.90976 0.87877 0.90970 0.92302 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.80 19.25 74.32 1.43 -4.37 16 2 C -0.24 -9.85 13.67 31.12 0.43 -9.43 16 3 C 0.20 8.66 4.61 84.57 0.39 9.05 16 4 N -0.45 -22.11 2.09 -649.35 -1.36 -23.47 16 5 C -0.35 -19.25 8.66 84.16 0.73 -18.52 16 6 H 0.09 5.47 5.92 -2.91 -0.02 5.45 16 7 C 0.03 1.83 5.43 84.99 0.46 2.29 16 8 N -0.89 -49.63 13.95 21.70 0.30 -49.33 16 9 Si 0.92 40.29 24.75 68.60 1.70 41.99 16 10 H -0.24 -9.71 6.70 99.48 0.67 -9.05 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.26 -11.06 7.06 99.48 0.70 -10.36 16 13 C 0.55 26.73 7.61 86.63 0.66 27.39 16 14 O -0.58 -28.46 16.47 -4.19 -0.07 -28.52 16 15 C -0.06 -2.72 6.94 24.36 0.17 -2.55 16 16 C -0.17 -6.05 9.75 22.70 0.22 -5.83 16 17 C 0.03 1.02 5.25 43.52 0.23 1.25 16 18 C -0.01 -0.15 2.32 -11.54 -0.03 -0.17 16 19 C -0.11 -2.45 5.38 30.59 0.16 -2.28 16 20 C -0.14 -2.15 9.52 71.98 0.68 -1.47 16 21 C -0.11 -2.07 5.02 30.59 0.15 -1.92 16 22 C -0.15 -3.23 9.80 71.98 0.71 -2.52 16 23 N -0.39 -16.71 12.04 -48.76 -0.59 -17.29 16 24 O 0.11 5.36 8.18 65.45 0.54 5.90 16 25 H 0.26 5.79 7.80 -4.43 -0.03 5.75 16 26 H 0.09 3.88 3.11 -2.39 -0.01 3.87 16 27 H 0.11 4.48 7.35 -2.38 -0.02 4.46 16 28 H 0.29 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.20 5.93 7.51 -2.91 -0.02 5.91 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.87 6.75 -2.39 -0.02 0.85 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.32 7.18 -2.39 -0.02 1.30 16 37 H 0.10 1.35 6.45 -2.39 -0.02 1.33 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.03 0.70 7.00 -2.38 -0.02 0.68 16 Total: -1.00 -65.98 335.92 7.92 -58.06 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 1.01 Total: 21.76 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 6.40 Total: -9.09 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -1.64 Total: -90.09 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.47 Total: -22.63 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.70 Total: 41.99 kcal Total: -65.98 7.92 -58.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.628 kcal (2) G-P(sol) polarization free energy of solvation -65.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds