Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 N 1.46503 * 109.46781 * 179.97438 * 3 2 1 5 5 C 1.36684 * 119.99614 * 95.59453 * 4 3 2 6 6 H 1.08004 * 119.99675 * 219.16223 * 5 4 3 7 7 C 1.39141 * 120.00112 * 39.16276 * 5 4 3 8 8 N 1.31301 * 120.00144 * 20.32158 * 7 5 4 9 9 Si 1.86803 * 119.99876 * 200.31734 * 7 5 4 10 10 H 1.48499 * 109.47107 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46776 * 120.00188 * 9 7 5 12 12 H 1.48497 * 109.47245 * 240.00048 * 9 7 5 13 13 C 1.34772 * 120.00506 * 275.59509 * 4 3 2 14 14 O 1.21752 * 120.00700 * 180.02562 * 13 4 3 15 15 C 1.46277 * 119.99422 * 359.97438 * 13 4 3 16 16 C 1.34996 * 119.99731 * 180.02562 * 15 13 4 17 17 C 1.47114 * 120.00012 * 179.97438 * 16 15 13 18 18 C 1.39848 * 119.69329 * 179.97438 * 17 16 15 19 19 C 1.38188 * 119.10405 * 179.97438 * 18 17 16 20 20 C 1.39326 * 118.48491 * 359.97438 * 19 18 17 21 21 O 1.35767 * 120.34298 * 180.02562 * 20 19 18 22 22 C 1.42898 * 116.99869 * 180.02562 * 21 20 19 23 23 C 1.39147 * 119.30589 * 0.02562 * 20 19 18 24 24 N 1.31453 * 120.84416 * 359.74669 * 23 20 19 25 25 H 1.08996 * 109.47208 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47220 * 300.00754 * 1 2 3 27 27 H 1.09004 * 109.46811 * 59.99799 * 1 2 3 28 28 H 1.08996 * 109.47187 * 239.99734 * 2 1 3 29 29 H 1.08998 * 109.46797 * 119.99749 * 2 1 3 30 30 H 1.08996 * 109.47373 * 59.99848 * 3 2 1 31 31 H 1.08998 * 109.47146 * 299.99536 * 3 2 1 32 32 H 0.97004 * 120.00467 * 179.97438 * 8 7 5 33 33 H 1.07992 * 120.00321 * 0.02562 * 15 13 4 34 34 H 1.08002 * 119.99834 * 359.97438 * 16 15 13 35 35 H 1.08002 * 120.44915 * 359.97438 * 18 17 16 36 36 H 1.07998 * 120.75326 * 180.02562 * 19 18 17 37 37 H 1.08995 * 109.47344 * 59.99647 * 22 21 20 38 38 H 1.08994 * 109.47318 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47025 * 299.99707 * 22 21 20 40 40 H 1.07996 * 119.57628 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.5577 -1.1772 6 1 5.0870 0.9800 -1.3389 7 6 3.7280 2.4192 -2.1679 8 7 2.9065 3.3957 -1.8587 9 14 4.2781 2.1865 -3.9379 10 1 5.1969 1.0229 -4.0218 11 1 3.0915 1.9428 -4.7970 12 1 4.9826 3.4086 -4.4020 13 6 4.1785 1.3288 1.1625 14 8 5.3960 1.3292 1.1631 15 6 3.4466 1.2061 2.4230 16 6 4.1211 1.0928 3.5868 17 6 3.3850 0.9699 4.8546 18 6 4.0903 0.8523 6.0565 19 6 3.3866 0.7382 7.2404 20 6 1.9943 0.7453 7.1891 21 8 1.2654 0.6360 8.3293 22 6 -0.1570 0.6507 8.1939 23 6 1.3587 0.8657 5.9572 24 7 2.0548 0.9772 4.8477 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 2.5855 3.9965 -2.5492 33 1 2.3666 1.2061 2.4226 34 1 5.2011 1.0923 3.5872 35 1 5.1703 0.8508 6.0595 36 1 3.9042 0.6463 8.1838 37 1 -0.4708 -0.1821 7.5647 38 1 -0.6167 0.5566 9.1777 39 1 -0.4686 1.5895 7.7360 40 1 0.2797 0.8713 5.9123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492472619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = -18.323696 kcal Electronic energy + Delta-G solvation = -22403.011323 eV Core-core repulsion = 18990.946355 eV Total energy + Delta-G solvation = -3412.064968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62375 -38.66396 -38.17898 -35.28060 -33.29663 -32.64393 -32.44749 -31.18854 -29.42892 -27.66788 -26.01971 -25.03846 -23.87692 -22.95801 -21.21138 -20.71049 -18.41111 -18.15565 -17.26458 -16.74559 -16.36612 -16.06745 -15.40074 -14.91817 -14.55087 -14.24471 -14.14016 -13.82422 -13.71975 -13.53589 -13.22954 -12.85929 -12.46687 -12.29348 -12.12196 -11.80783 -11.65475 -11.57803 -11.35634 -11.17189 -10.93100 -10.63287 -10.32108 -10.29143 -9.91333 -9.85751 -9.53420 -9.43873 -8.95028 -8.40825 -7.84111 -7.43100 -6.37462 -3.96726 0.75439 1.19389 2.35770 2.97727 3.16778 3.25318 3.31957 3.89356 4.12357 4.33689 4.50779 4.51361 4.65925 4.76905 4.86425 4.97669 5.01039 5.09972 5.18376 5.38168 5.52382 5.64923 5.74120 5.76675 5.82216 5.90124 6.04140 6.17177 6.28716 6.43198 6.51118 6.52056 6.64330 6.88472 6.96201 6.98983 7.04367 7.26827 7.54737 7.99732 8.27463 8.52116 9.18780 9.37933 10.04458 10.66250 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025067 B = 0.003497 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.745472 B = 8004.011094 C = 8759.694844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.105 3.895 4 N -0.423 5.423 5 C -0.306 4.306 6 H 0.093 0.907 7 C 0.039 3.961 8 N -0.860 5.860 9 Si 0.918 3.082 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.470 3.530 14 O -0.587 6.587 15 C -0.117 4.117 16 C -0.101 4.101 17 C 0.135 3.865 18 C -0.121 4.121 19 C -0.107 4.107 20 C 0.060 3.940 21 O -0.314 6.314 22 C 0.024 3.976 23 C 0.028 3.972 24 N -0.444 5.444 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.269 0.731 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 -5.146 15.369 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.019 4.019 4 N -0.139 5.139 5 C -0.434 4.434 6 H 0.110 0.890 7 C -0.167 4.167 8 N -0.497 5.497 9 Si 0.744 3.256 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.261 3.739 14 O -0.473 6.473 15 C -0.140 4.140 16 C -0.122 4.122 17 C 0.000 4.000 18 C -0.141 4.141 19 C -0.133 4.133 20 C 0.012 3.988 21 O -0.226 6.226 22 C -0.071 4.071 23 C -0.132 4.132 24 N -0.154 5.154 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.999 -4.913 14.642 17.393 hybrid contribution 0.135 -0.003 -0.132 0.189 sum -7.864 -4.917 14.510 17.221 Atomic orbital electron populations 1.21671 0.96304 1.00673 1.01560 1.21993 0.94989 0.99047 1.01852 1.21638 0.81964 0.94579 1.03755 1.43404 1.04718 1.60753 1.05065 1.19493 1.10524 1.22905 0.90500 0.88960 1.25474 0.96983 0.93468 1.00762 1.69916 1.32562 1.13283 1.33938 0.86005 0.78662 0.78721 0.82183 1.19015 1.20497 1.20649 1.18318 0.87631 0.83997 0.83934 1.90631 1.13644 1.56141 1.86928 1.23612 1.00919 0.96017 0.93445 1.21853 0.99192 1.02107 0.89080 1.20107 0.88778 0.97458 0.93704 1.22076 1.01497 0.99205 0.91366 1.20814 0.90686 1.02209 0.99572 1.20195 0.92300 0.99591 0.86688 1.86012 1.19389 1.88208 1.29031 1.23100 0.78219 1.01726 1.04040 1.22898 1.00476 1.02776 0.87086 1.67654 1.07882 1.10238 1.29594 0.93464 0.93019 0.92832 0.91779 0.92858 0.92885 0.87721 0.92073 0.85237 0.84386 0.83681 0.84111 0.92388 0.88091 0.92372 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.14 -2.62 6.10 -26.73 -0.16 -2.78 16 3 C 0.10 2.33 4.56 -4.04 -0.02 2.31 16 4 N -0.42 -11.02 2.51 -116.45 -0.29 -11.31 16 5 C -0.31 -8.56 8.86 -15.05 -0.13 -8.69 16 6 H 0.09 2.69 7.79 -52.48 -0.41 2.28 16 7 C 0.04 1.03 4.91 -17.44 -0.09 0.94 16 8 N -0.86 -23.23 11.60 55.51 0.64 -22.58 16 9 Si 0.92 20.48 29.60 -169.99 -5.03 15.45 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.47 12.12 7.51 -13.03 -0.10 12.02 16 14 O -0.59 -16.98 16.12 5.14 0.08 -16.89 16 15 C -0.12 -2.45 8.24 -37.50 -0.31 -2.76 16 16 C -0.10 -1.87 9.44 -37.13 -0.35 -2.22 16 17 C 0.13 2.15 6.70 -83.15 -0.56 1.59 16 18 C -0.12 -1.55 9.83 -39.00 -0.38 -1.93 16 19 C -0.11 -1.23 10.11 -39.20 -0.40 -1.63 16 20 C 0.06 0.71 6.72 -38.84 -0.26 0.45 16 21 O -0.31 -3.27 10.50 -19.01 -0.20 -3.47 16 22 C 0.02 0.16 9.82 101.05 0.99 1.15 16 23 C 0.03 0.36 10.21 -17.38 -0.18 0.18 16 24 N -0.44 -7.06 9.32 -9.78 -0.09 -7.15 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.05 0.98 7.53 -51.93 -0.39 0.59 16 30 H 0.05 1.12 6.42 -51.93 -0.33 0.79 16 31 H 0.10 2.53 5.68 -51.93 -0.30 2.23 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.13 2.57 5.48 -52.49 -0.29 2.29 16 34 H 0.14 2.54 7.52 -52.49 -0.39 2.14 16 35 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 40 H 0.16 1.55 6.30 -52.49 -0.33 1.22 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -32.83 341.09 -6.65 -39.49 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.33 Total: 4.51 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.57 Total: -3.18 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.26 Total: -41.04 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.12 Total: -20.36 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.83 -6.65 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492472619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.163 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds