Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 N 1.46503 * 109.46781 * 179.97438 * 3 2 1 5 5 C 1.36684 * 119.99614 * 95.59453 * 4 3 2 6 6 H 1.08004 * 119.99675 * 219.16223 * 5 4 3 7 7 C 1.39141 * 120.00112 * 39.16276 * 5 4 3 8 8 N 1.31301 * 120.00144 * 20.32158 * 7 5 4 9 9 Si 1.86803 * 119.99876 * 200.31734 * 7 5 4 10 10 H 1.48499 * 109.47107 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46776 * 120.00188 * 9 7 5 12 12 H 1.48497 * 109.47245 * 240.00048 * 9 7 5 13 13 C 1.34772 * 120.00506 * 275.59509 * 4 3 2 14 14 O 1.21752 * 120.00700 * 180.02562 * 13 4 3 15 15 C 1.46277 * 119.99422 * 359.97438 * 13 4 3 16 16 C 1.34996 * 119.99731 * 180.02562 * 15 13 4 17 17 C 1.47114 * 120.00012 * 179.97438 * 16 15 13 18 18 C 1.39848 * 119.69329 * 179.97438 * 17 16 15 19 19 C 1.38188 * 119.10405 * 179.97438 * 18 17 16 20 20 C 1.39326 * 118.48491 * 359.97438 * 19 18 17 21 21 O 1.35767 * 120.34298 * 180.02562 * 20 19 18 22 22 C 1.42898 * 116.99869 * 180.02562 * 21 20 19 23 23 C 1.39147 * 119.30589 * 0.02562 * 20 19 18 24 24 N 1.31453 * 120.84416 * 359.74669 * 23 20 19 25 25 H 1.08996 * 109.47208 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47220 * 300.00754 * 1 2 3 27 27 H 1.09004 * 109.46811 * 59.99799 * 1 2 3 28 28 H 1.08996 * 109.47187 * 239.99734 * 2 1 3 29 29 H 1.08998 * 109.46797 * 119.99749 * 2 1 3 30 30 H 1.08996 * 109.47373 * 59.99848 * 3 2 1 31 31 H 1.08998 * 109.47146 * 299.99536 * 3 2 1 32 32 H 0.97004 * 120.00467 * 179.97438 * 8 7 5 33 33 H 1.07992 * 120.00321 * 0.02562 * 15 13 4 34 34 H 1.08002 * 119.99834 * 359.97438 * 16 15 13 35 35 H 1.08002 * 120.44915 * 359.97438 * 18 17 16 36 36 H 1.07998 * 120.75326 * 180.02562 * 19 18 17 37 37 H 1.08995 * 109.47344 * 59.99647 * 22 21 20 38 38 H 1.08994 * 109.47318 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47025 * 299.99707 * 22 21 20 40 40 H 1.07996 * 119.57628 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1889 1.5577 -1.1772 6 1 5.0870 0.9800 -1.3389 7 6 3.7280 2.4192 -2.1679 8 7 2.9065 3.3957 -1.8587 9 14 4.2781 2.1865 -3.9379 10 1 5.1969 1.0229 -4.0218 11 1 3.0915 1.9428 -4.7970 12 1 4.9826 3.4086 -4.4020 13 6 4.1785 1.3288 1.1625 14 8 5.3960 1.3292 1.1631 15 6 3.4466 1.2061 2.4230 16 6 4.1211 1.0928 3.5868 17 6 3.3850 0.9699 4.8546 18 6 4.0903 0.8523 6.0565 19 6 3.3866 0.7382 7.2404 20 6 1.9943 0.7453 7.1891 21 8 1.2654 0.6360 8.3293 22 6 -0.1570 0.6507 8.1939 23 6 1.3587 0.8657 5.9572 24 7 2.0548 0.9772 4.8477 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 2.5855 3.9965 -2.5492 33 1 2.3666 1.2061 2.4226 34 1 5.2011 1.0923 3.5872 35 1 5.1703 0.8508 6.0595 36 1 3.9042 0.6463 8.1838 37 1 -0.4708 -0.1821 7.5647 38 1 -0.6167 0.5566 9.1777 39 1 -0.4686 1.5895 7.7360 40 1 0.2797 0.8713 5.9123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492472619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = -39.137229 kcal Electronic energy + Delta-G solvation = -22403.913865 eV Core-core repulsion = 18990.946355 eV Total energy + Delta-G solvation = -3412.967511 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60289 -40.48625 -39.18836 -37.17862 -34.87410 -34.22759 -33.48562 -33.03129 -30.63203 -28.40574 -27.75290 -26.65600 -25.22635 -24.02384 -22.69043 -22.23948 -19.93805 -19.14088 -18.91574 -18.39404 -17.74826 -16.92786 -16.81112 -16.59162 -16.11052 -15.53776 -15.38345 -15.25585 -15.12151 -14.73887 -14.72545 -14.08393 -13.98735 -13.48886 -13.40565 -13.28422 -13.02550 -12.87179 -12.74261 -12.59178 -12.51504 -12.25976 -12.04785 -12.00300 -11.56697 -11.06148 -10.91123 -10.64734 -10.48378 -10.43995 -9.47536 -9.00873 -8.38392 -6.08982 -0.46151 0.22361 0.96198 1.40134 1.40750 1.55469 2.21932 2.27440 2.48110 2.87786 3.03554 3.09532 3.29713 3.59623 3.72552 3.96603 4.11933 4.20990 4.32270 4.33327 4.37451 4.40916 4.47839 4.59205 4.62537 4.75152 4.78430 4.87121 4.96176 5.02025 5.12518 5.25892 5.36137 5.39708 5.41945 5.44996 5.51511 5.57551 6.19683 6.20603 6.53507 6.92308 7.14842 7.40749 8.05370 8.64938 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025067 B = 0.003497 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.745472 B = 8004.011094 C = 8759.694844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.131 4.131 3 C 0.110 3.890 4 N -0.438 5.438 5 C -0.346 4.346 6 H 0.065 0.935 7 C 0.006 3.994 8 N -0.884 5.884 9 Si 0.985 3.015 10 H -0.269 1.269 11 H -0.261 1.261 12 H -0.276 1.276 13 C 0.462 3.538 14 O -0.636 6.636 15 C -0.156 4.156 16 C -0.057 4.057 17 C 0.092 3.908 18 C -0.106 4.106 19 C -0.111 4.111 20 C 0.078 3.922 21 O -0.319 6.319 22 C 0.012 3.988 23 C 0.017 3.983 24 N -0.464 5.464 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.276 0.724 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.890 -5.722 17.635 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.169 4.169 3 C -0.013 4.013 4 N -0.154 5.154 5 C -0.474 4.474 6 H 0.083 0.917 7 C -0.198 4.198 8 N -0.521 5.521 9 Si 0.808 3.192 10 H -0.194 1.194 11 H -0.185 1.185 12 H -0.202 1.202 13 C 0.254 3.746 14 O -0.525 6.525 15 C -0.179 4.179 16 C -0.078 4.078 17 C -0.042 4.042 18 C -0.125 4.125 19 C -0.137 4.137 20 C 0.030 3.970 21 O -0.230 6.230 22 C -0.082 4.082 23 C -0.144 4.144 24 N -0.175 5.175 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.086 0.914 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.836 -5.489 16.918 20.325 hybrid contribution 0.619 0.165 -0.437 0.776 sum -9.217 -5.324 16.481 19.619 Atomic orbital electron populations 1.21616 0.93069 1.02475 1.02161 1.21878 0.97649 0.96292 1.01109 1.21669 0.79988 0.96784 1.02848 1.43629 1.06121 1.60901 1.04730 1.19435 1.11096 1.24405 0.92466 0.91730 1.26248 0.96742 0.92517 1.04273 1.69978 1.33107 1.13583 1.35386 0.85026 0.78724 0.78383 0.77091 1.19380 1.18505 1.20208 1.19058 0.87421 0.82641 0.85446 1.90563 1.15678 1.58379 1.87920 1.23175 1.00943 1.01869 0.91880 1.22079 0.99233 0.96658 0.89844 1.19879 0.89299 1.01717 0.93352 1.22292 1.02686 0.96999 0.90542 1.21169 0.90787 1.01466 1.00235 1.20370 0.92829 0.96897 0.86933 1.86035 1.21436 1.87382 1.28192 1.23463 0.76042 1.02636 1.06080 1.23301 1.01597 1.02769 0.86718 1.67532 1.08108 1.10383 1.31429 0.91029 0.91858 0.92792 0.93237 0.92846 0.92338 0.89715 0.91394 0.84319 0.84758 0.81437 0.81105 0.91384 0.85601 0.91524 0.80119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.20 16 2 C -0.13 -4.97 6.10 30.60 0.19 -4.78 16 3 C 0.11 5.10 4.56 86.38 0.39 5.49 16 4 N -0.44 -24.11 2.51 -640.54 -1.61 -25.71 16 5 C -0.35 -20.46 8.86 84.15 0.75 -19.72 16 6 H 0.06 4.06 7.79 -2.91 -0.02 4.04 16 7 C 0.01 0.32 4.91 84.99 0.42 0.74 16 8 N -0.88 -48.95 11.60 21.69 0.25 -48.70 16 9 Si 0.99 43.00 29.60 68.60 2.03 45.03 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 13 C 0.46 25.21 7.51 86.33 0.65 25.86 16 14 O -0.64 -39.11 16.12 -4.51 -0.07 -39.18 16 15 C -0.16 -6.82 8.24 23.62 0.19 -6.62 16 16 C -0.06 -2.14 9.44 23.86 0.23 -1.91 16 17 C 0.09 2.84 6.70 41.68 0.28 3.12 16 18 C -0.11 -2.44 9.83 22.65 0.22 -2.21 16 19 C -0.11 -2.17 10.11 22.52 0.23 -1.94 16 20 C 0.08 1.60 6.72 22.75 0.15 1.75 16 21 O -0.32 -5.39 10.50 -90.94 -0.95 -6.35 16 22 C 0.01 0.11 9.82 113.37 1.11 1.22 16 23 C 0.02 0.39 10.21 84.97 0.87 1.26 16 24 N -0.46 -14.16 9.32 -184.86 -1.72 -15.88 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 29 H 0.05 2.01 7.53 -2.39 -0.02 1.99 16 30 H 0.06 2.57 6.42 -2.39 -0.02 2.56 16 31 H 0.08 4.24 5.68 -2.39 -0.01 4.23 16 32 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 33 H 0.14 5.68 5.48 -2.91 -0.02 5.67 16 34 H 0.13 5.07 7.52 -2.91 -0.02 5.05 16 35 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.07 0.53 7.67 -2.39 -0.02 0.51 16 38 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.07 0.54 7.67 -2.39 -0.02 0.52 16 40 H 0.18 3.04 6.30 -2.91 -0.02 3.02 16 Total: -1.00 -75.54 341.09 5.36 -70.18 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 1.04 Total: 21.55 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 6.39 Total: -0.95 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -3.08 Total: -90.29 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.03 Total: -45.53 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.54 5.36 -70.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492472619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.047 kcal (2) G-P(sol) polarization free energy of solvation -75.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds