Wall clock time and date at job start Tue Mar 31 2020 06:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21701 * 120.00118 * 359.97438 * 14 13 3 16 16 C 1.46428 * 120.00453 * 180.02562 * 14 13 3 17 17 C 1.34800 * 120.00274 * 180.02562 * 16 14 13 18 18 C 1.47221 * 119.99966 * 179.97438 * 17 16 14 19 19 C 1.39843 * 120.56042 * 359.97438 * 18 17 16 20 20 N 1.31621 * 120.64936 * 179.97438 * 19 18 17 21 21 C 1.31922 * 121.96654 * 359.97438 * 20 19 18 22 22 C 1.38856 * 121.05795 * 0.02562 * 21 20 19 23 23 O 1.35922 * 120.38427 * 180.02562 * 22 21 20 24 24 C 1.42895 * 117.00128 * 359.97438 * 23 22 21 25 25 C 1.38808 * 119.22223 * 359.76198 * 22 21 20 26 26 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 27 27 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 28 28 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 30 30 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 33 33 H 1.08004 * 119.99707 * 359.97438 * 16 14 13 34 34 H 1.08004 * 120.00019 * 359.97438 * 17 16 14 35 35 H 1.08003 * 119.67558 * 359.97438 * 19 18 17 36 36 H 1.08003 * 119.46995 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.46751 * 60.00791 * 24 23 22 38 38 H 1.09007 * 109.47192 * 180.02562 * 24 23 22 39 39 H 1.08998 * 109.47920 * 300.00376 * 24 23 22 40 40 H 1.08002 * 120.89059 * 180.25741 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3421 2.6320 -0.4312 16 6 0.0478 3.3186 -2.6184 17 6 -1.1695 3.8862 -2.7334 18 6 -1.5589 4.5444 -3.9914 19 6 -0.6750 4.5881 -5.0742 20 7 -1.0215 5.1756 -6.1998 21 6 -2.2024 5.7424 -6.3572 22 6 -3.1388 5.7435 -5.3319 23 8 -4.3516 6.3311 -5.5091 24 6 -4.6010 6.9334 -6.7807 25 6 -2.8238 5.1329 -4.1258 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0275 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8288 -0.0530 2.9544 32 1 2.2721 2.1230 -1.9977 33 1 0.7375 3.3471 -3.4489 34 1 -1.8591 3.8581 -1.9026 35 1 0.3015 4.1353 -4.9859 36 1 -2.4447 6.2129 -7.2987 37 1 -4.5250 6.1772 -7.5620 38 1 -5.6021 7.3648 -6.7882 39 1 -3.8664 7.7180 -6.9616 40 1 -3.5333 5.1144 -3.3117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492619500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:51 Heat of formation + Delta-G solvation = -28.282998 kcal Electronic energy + Delta-G solvation = -21877.247708 eV Core-core repulsion = 18464.750872 eV Total energy + Delta-G solvation = -3412.496836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88776 -39.10525 -38.43754 -35.30538 -34.30953 -32.40320 -31.96418 -30.94591 -29.55759 -27.95524 -27.03280 -24.46155 -23.84521 -22.96006 -21.41166 -19.69247 -19.30232 -18.22333 -17.52518 -17.17176 -16.43211 -16.24406 -15.93063 -15.25896 -14.58335 -14.49336 -14.28273 -14.19827 -13.94431 -13.38687 -13.30617 -12.69437 -12.53446 -12.41448 -12.07822 -11.91312 -11.83331 -11.53620 -11.24272 -10.99662 -10.89199 -10.79248 -10.33250 -10.17450 -9.73206 -9.63409 -9.13304 -9.09360 -9.04229 -8.50065 -8.45770 -7.81116 -6.12337 -4.21871 0.29093 1.01492 1.98215 2.76451 3.25868 3.31286 3.32373 3.55312 3.98909 4.02859 4.17939 4.30786 4.36850 4.57241 4.67926 4.70993 4.71167 4.94169 5.04335 5.10480 5.19136 5.28160 5.58953 5.63162 5.78514 6.15210 6.35419 6.39900 6.41932 6.46814 6.66772 6.83312 7.04878 7.20491 7.36455 7.43899 7.61994 7.65834 7.73612 7.89996 8.17801 8.65416 8.76999 9.11241 9.45363 10.92984 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.002689 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.750730 B =10410.156360 C =10933.446417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.526 3.474 15 O -0.549 6.549 16 C -0.168 4.168 17 C -0.056 4.056 18 C -0.065 4.065 19 C 0.074 3.926 20 N -0.448 5.448 21 C 0.014 3.986 22 C 0.077 3.923 23 O -0.312 6.312 24 C 0.024 3.976 25 C -0.095 4.095 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.022 0.978 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.390 0.610 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.020 9.905 -16.782 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.346 5.346 14 C 0.313 3.687 15 O -0.430 6.430 16 C -0.189 4.189 17 C -0.077 4.077 18 C -0.067 4.067 19 C -0.085 4.085 20 N -0.156 5.156 21 C -0.144 4.144 22 C 0.030 3.970 23 O -0.224 6.224 24 C -0.071 4.071 25 C -0.122 4.122 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.174 0.826 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.109 9.804 -16.464 22.667 hybrid contribution 0.787 0.042 0.115 0.796 sum -11.323 9.846 -16.349 22.191 Atomic orbital electron populations 1.21843 0.98335 0.98049 1.01251 1.21934 0.92628 0.99730 1.02310 1.18811 0.94242 0.89238 0.80969 0.93190 1.21196 0.90688 1.39294 1.06201 0.92101 1.24888 0.98617 0.94800 0.95376 1.69887 1.35234 1.37570 1.09243 0.86511 0.84839 0.78316 0.77444 1.20187 1.21148 1.20157 1.46447 1.14398 1.55123 1.18593 1.18153 0.83131 0.79870 0.87537 1.90789 1.51490 1.60336 1.40411 1.23368 0.97394 0.99641 0.98483 1.22085 0.96833 0.94123 0.94650 1.19923 0.93647 0.97748 0.95408 1.23066 1.00008 0.97602 0.87819 1.67482 1.16911 1.06823 1.24383 1.22962 0.90313 1.02169 0.98910 1.19940 0.86307 0.95428 0.95374 1.86096 1.30711 1.69504 1.36083 1.23129 1.02963 0.97425 0.83583 1.21127 0.96726 0.97943 0.96356 0.93135 0.94265 0.95859 0.94997 0.88282 0.92496 0.77788 0.85643 0.84176 0.81857 0.82565 0.92347 0.87849 0.92347 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.68 2.24 -69.09 -0.15 6.53 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 8 N -0.88 -24.55 11.30 55.43 0.63 -23.92 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.13 5.02 -56.33 -0.28 -14.41 16 14 C 0.53 10.12 6.31 -12.96 -0.08 10.03 16 15 O -0.55 -12.46 13.36 5.19 0.07 -12.39 16 16 C -0.17 -2.38 9.42 -37.51 -0.35 -2.73 16 17 C -0.06 -0.74 9.48 -37.15 -0.35 -1.09 16 18 C -0.07 -0.76 5.88 -104.93 -0.62 -1.38 16 19 C 0.07 0.84 10.59 -17.04 -0.18 0.66 16 20 N -0.45 -5.31 10.34 -12.72 -0.13 -5.44 16 21 C 0.01 0.14 10.21 -17.28 -0.18 -0.04 16 22 C 0.08 0.79 6.70 -39.14 -0.26 0.53 16 23 O -0.31 -2.85 10.51 -19.49 -0.20 -3.05 16 24 C 0.02 0.12 9.82 101.05 0.99 1.11 16 25 C -0.10 -1.04 9.89 -38.65 -0.38 -1.42 16 26 H 0.05 1.19 7.84 -51.93 -0.41 0.79 16 27 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.65 5.96 -51.93 -0.31 2.34 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.39 6.75 8.52 -40.82 -0.35 6.40 16 33 H 0.13 1.38 6.10 -52.48 -0.32 1.06 16 34 H 0.14 1.92 7.52 -52.48 -0.39 1.52 16 35 H 0.16 1.58 6.18 -52.48 -0.32 1.25 16 36 H 0.16 1.12 6.29 -52.48 -0.33 0.78 16 37 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 38 H 0.10 0.31 8.14 -51.92 -0.42 -0.11 16 39 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 40 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 335.42 15.07 5.05 5.05 Total: -1.00 -31.47 335.42 -6.83 -38.30 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.15 Total: 6.74 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.79 Total: -6.33 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.21 Total: -43.77 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.14 Total: -15.44 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.47 -6.83 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492619500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.018 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds