Wall clock time and date at job start Tue Mar 31 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21701 * 120.00118 * 359.97438 * 14 13 3 16 16 C 1.46428 * 120.00453 * 180.02562 * 14 13 3 17 17 C 1.34800 * 120.00274 * 180.02562 * 16 14 13 18 18 C 1.47221 * 119.99966 * 179.97438 * 17 16 14 19 19 C 1.39843 * 120.56042 * 359.97438 * 18 17 16 20 20 N 1.31621 * 120.64936 * 179.97438 * 19 18 17 21 21 C 1.31922 * 121.96654 * 359.97438 * 20 19 18 22 22 C 1.38856 * 121.05795 * 0.02562 * 21 20 19 23 23 O 1.35922 * 120.38427 * 180.02562 * 22 21 20 24 24 C 1.42895 * 117.00128 * 359.97438 * 23 22 21 25 25 C 1.38808 * 119.22223 * 359.76198 * 22 21 20 26 26 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 27 27 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 28 28 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 30 30 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 33 33 H 1.08004 * 119.99707 * 359.97438 * 16 14 13 34 34 H 1.08004 * 120.00019 * 359.97438 * 17 16 14 35 35 H 1.08003 * 119.67558 * 359.97438 * 19 18 17 36 36 H 1.08003 * 119.46995 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.46751 * 60.00791 * 24 23 22 38 38 H 1.09007 * 109.47192 * 180.02562 * 24 23 22 39 39 H 1.08998 * 109.47920 * 300.00376 * 24 23 22 40 40 H 1.08002 * 120.89059 * 180.25741 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3421 2.6320 -0.4312 16 6 0.0478 3.3186 -2.6184 17 6 -1.1695 3.8862 -2.7334 18 6 -1.5589 4.5444 -3.9914 19 6 -0.6750 4.5881 -5.0742 20 7 -1.0215 5.1756 -6.1998 21 6 -2.2024 5.7424 -6.3572 22 6 -3.1388 5.7435 -5.3319 23 8 -4.3516 6.3311 -5.5091 24 6 -4.6010 6.9334 -6.7807 25 6 -2.8238 5.1329 -4.1258 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0275 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8288 -0.0530 2.9544 32 1 2.2721 2.1230 -1.9977 33 1 0.7375 3.3471 -3.4489 34 1 -1.8591 3.8581 -1.9026 35 1 0.3015 4.1353 -4.9859 36 1 -2.4447 6.2129 -7.2987 37 1 -4.5250 6.1772 -7.5620 38 1 -5.6021 7.3648 -6.7882 39 1 -3.8664 7.7180 -6.9616 40 1 -3.5333 5.1144 -3.3117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492619500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:50 Heat of formation + Delta-G solvation = -49.438791 kcal Electronic energy + Delta-G solvation = -21878.165092 eV Core-core repulsion = 18464.750872 eV Total energy + Delta-G solvation = -3413.414220 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.66653 -40.64804 -39.19630 -37.03682 -35.43773 -34.27362 -33.05209 -32.52606 -30.57118 -28.96979 -28.39180 -25.73872 -24.70030 -24.61842 -22.68512 -21.35539 -20.75177 -19.12574 -18.85056 -17.98687 -17.63437 -17.43316 -16.95903 -16.83102 -16.19446 -16.00162 -15.39933 -15.13942 -14.82674 -14.70388 -14.53909 -14.15259 -13.87584 -13.53616 -13.42689 -13.14426 -13.07471 -12.87039 -12.64668 -12.62634 -12.43794 -12.17216 -12.04383 -11.86953 -11.56170 -11.04651 -10.77481 -10.54064 -10.49193 -9.98587 -9.61468 -9.29416 -8.14345 -6.31529 -0.65160 0.20382 0.92514 1.46385 1.48031 1.55689 2.14772 2.38049 2.45066 2.70969 2.82207 3.15195 3.41650 3.54958 3.67865 3.85098 3.98678 4.11990 4.32762 4.37931 4.40346 4.43876 4.51407 4.59321 4.77246 4.78157 4.85697 4.89058 5.07978 5.20825 5.30886 5.35161 5.45114 5.46200 5.58425 5.64510 5.82195 5.96501 6.18587 6.18795 6.76494 6.84180 7.02525 7.35468 7.60615 8.90841 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.002689 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.750730 B =10410.156360 C =10933.446417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.698 5.698 14 C 0.524 3.476 15 O -0.592 6.592 16 C -0.182 4.182 17 C -0.029 4.029 18 C -0.078 4.078 19 C 0.072 3.928 20 N -0.467 5.467 21 C 0.020 3.980 22 C 0.075 3.925 23 O -0.326 6.326 24 C 0.012 3.988 25 C -0.102 4.102 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.161 0.839 34 H 0.129 0.871 35 H 0.180 0.820 36 H 0.185 0.815 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.918 10.842 -19.559 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.346 5.346 14 C 0.314 3.686 15 O -0.476 6.476 16 C -0.203 4.203 17 C -0.050 4.050 18 C -0.080 4.080 19 C -0.086 4.086 20 N -0.175 5.175 21 C -0.137 4.137 22 C 0.027 3.973 23 O -0.238 6.238 24 C -0.082 4.082 25 C -0.128 4.128 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.179 0.821 34 H 0.147 0.853 35 H 0.196 0.804 36 H 0.202 0.798 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.006 10.757 -19.290 25.139 hybrid contribution 0.554 -0.118 0.883 1.049 sum -11.452 10.640 -18.407 24.149 Atomic orbital electron populations 1.21679 0.96982 0.99111 1.00299 1.21785 0.93758 0.99140 1.01310 1.18378 0.93655 0.89222 0.81433 0.98348 1.21564 0.91447 1.39065 1.06591 0.90941 1.25776 1.03286 0.94430 0.95060 1.70047 1.37112 1.38412 1.09760 0.85432 0.79165 0.78422 0.77512 1.19698 1.21305 1.18897 1.46184 1.15424 1.55352 1.17618 1.18867 0.82055 0.78977 0.88712 1.90768 1.52525 1.61857 1.42462 1.23112 0.98823 1.01176 0.97141 1.22093 0.95910 0.92124 0.94840 1.19765 0.94394 0.99008 0.94864 1.23318 1.00522 0.97251 0.87552 1.67556 1.17808 1.07638 1.24542 1.23443 0.89540 1.00925 0.99841 1.19974 0.86941 0.95253 0.95095 1.86092 1.29942 1.69448 1.38339 1.23472 1.04490 0.97991 0.82201 1.21333 0.96656 0.97611 0.97155 0.95563 0.93682 0.93641 0.93982 0.91055 0.92633 0.75917 0.82123 0.85306 0.80365 0.79777 0.91134 0.85944 0.91167 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.51 71.98 0.61 -4.97 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.15 2.24 44.25 0.10 14.25 16 4 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 5 C -0.55 -28.85 8.73 25.60 0.22 -28.63 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.78 5.30 84.66 0.45 1.23 16 8 N -0.92 -52.39 11.30 21.45 0.24 -52.15 16 9 Si 0.97 41.98 29.54 68.60 2.03 44.00 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 13 N -0.70 -28.36 5.02 -450.36 -2.26 -30.62 16 14 C 0.52 20.34 6.31 86.38 0.54 20.88 16 15 O -0.59 -27.85 13.36 -4.35 -0.06 -27.90 16 16 C -0.18 -4.95 9.42 23.61 0.22 -4.73 16 17 C -0.03 -0.73 9.48 23.84 0.23 -0.50 16 18 C -0.08 -1.70 5.88 -20.06 -0.12 -1.82 16 19 C 0.07 1.48 10.59 85.11 0.90 2.38 16 20 N -0.47 -9.93 10.34 -194.14 -2.01 -11.94 16 21 C 0.02 0.35 10.21 84.83 0.87 1.21 16 22 C 0.08 1.38 6.70 22.55 0.15 1.54 16 23 O -0.33 -5.21 10.51 -92.67 -0.97 -6.19 16 24 C 0.01 0.09 9.82 113.37 1.11 1.20 16 25 C -0.10 -2.06 9.89 22.87 0.23 -1.84 16 26 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 27 H 0.04 1.96 5.64 -2.39 -0.01 1.94 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 3.94 5.96 -2.39 -0.01 3.93 16 31 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 32 H 0.41 13.69 8.52 -92.71 -0.79 12.90 16 33 H 0.16 3.14 6.10 -2.91 -0.02 3.12 16 34 H 0.13 3.55 7.52 -2.91 -0.02 3.53 16 35 H 0.18 2.96 6.18 -2.91 -0.02 2.95 16 36 H 0.19 1.98 6.29 -2.91 -0.02 1.96 16 37 H 0.07 0.33 7.67 -2.38 -0.02 0.32 16 38 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 39 H 0.07 0.34 7.67 -2.39 -0.02 0.32 16 40 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -69.86 335.42 2.93 -66.92 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.28 Total: 23.48 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 5.68 Total: -5.61 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -4.02 Total: -94.71 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.03 Total: -34.09 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -69.86 2.93 -66.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492619500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.484 kcal (2) G-P(sol) polarization free energy of solvation -69.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds