Wall clock time and date at job start Tue Mar 31 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47456 * 2 1 4 4 H 1.08999 * 109.47586 * 304.99850 * 3 2 1 5 5 C 1.50707 * 109.47199 * 184.99661 * 3 2 1 6 6 H 1.07999 * 119.99731 * 239.99712 * 5 3 2 7 7 C 1.37878 * 119.99704 * 60.00425 * 5 3 2 8 8 N 1.31510 * 119.99718 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99802 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47210 * 59.99595 * 9 7 5 11 11 H 1.48503 * 109.46964 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46830 * 299.99571 * 9 7 5 13 13 N 1.46504 * 109.46949 * 64.99984 * 3 2 1 14 14 C 1.34774 * 119.99862 * 274.99469 * 13 3 2 15 15 O 1.21692 * 120.00324 * 0.02562 * 14 13 3 16 16 C 1.46431 * 120.00074 * 179.97438 * 14 13 3 17 17 C 1.34800 * 120.00067 * 173.22710 * 16 14 13 18 18 C 1.47216 * 120.00085 * 349.08434 * 17 16 14 19 19 C 1.39850 * 120.55776 * 136.56043 * 18 17 16 20 20 N 1.31616 * 120.64810 * 179.97438 * 19 18 17 21 21 C 1.31925 * 121.96939 * 0.02984 * 20 19 18 22 22 C 1.38858 * 121.05535 * 359.97438 * 21 20 19 23 23 O 1.35929 * 120.38744 * 180.02562 * 22 21 20 24 24 C 1.42899 * 116.99801 * 0.02562 * 23 22 21 25 25 C 1.38807 * 119.22415 * 359.71232 * 22 21 20 26 26 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46461 * 59.99877 * 1 2 3 28 28 H 1.08995 * 109.46841 * 300.00356 * 1 2 3 29 29 H 1.09007 * 109.47009 * 120.00156 * 2 1 3 30 30 H 1.09001 * 109.47251 * 239.99798 * 2 1 3 31 31 H 0.97006 * 119.99650 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99841 * 95.00150 * 13 3 2 33 33 H 1.07998 * 119.99680 * 353.23311 * 16 14 13 34 34 H 1.07996 * 120.00057 * 169.08978 * 17 16 14 35 35 H 1.08001 * 119.67361 * 0.02562 * 19 18 17 36 36 H 1.07992 * 119.47239 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.47031 * 179.97438 * 24 23 22 38 38 H 1.08999 * 109.47400 * 299.99476 * 24 23 22 39 39 H 1.09001 * 109.47365 * 59.99630 * 24 23 22 40 40 H 1.08000 * 120.89792 * 180.29578 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0051 0.8810 -1.3817 10 1 6.5976 0.1471 -0.2348 11 1 6.3979 0.2165 -2.6503 12 1 6.4996 2.2813 -1.3821 13 7 1.6525 2.0974 1.2519 14 6 0.4353 2.6644 1.3669 15 8 -0.3421 2.6320 0.4312 16 6 0.0476 3.3186 2.6183 17 6 -1.1115 4.0030 2.6902 18 6 -1.8689 4.2988 1.4630 19 6 -3.2581 4.1413 1.4296 20 7 -3.9372 4.4058 0.3336 21 6 -3.3474 4.8253 -0.7694 22 6 -1.9718 5.0080 -0.8211 23 8 -1.3783 5.4413 -1.9646 24 6 -2.2313 5.6925 -3.0833 25 6 -1.2108 4.7492 0.3105 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.8294 -0.0619 -2.9494 32 1 2.2720 2.1230 1.9978 33 1 0.6905 3.2528 3.4836 34 1 -1.4844 4.3344 3.6480 35 1 -3.7789 3.8001 2.3121 36 1 -3.9440 5.0307 -1.6458 37 1 -1.6320 6.0325 -3.9280 38 1 -2.7546 4.7756 -3.3544 39 1 -2.9578 6.4615 -2.8208 40 1 -0.1396 4.8867 0.3018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492619501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:52 Heat of formation + Delta-G solvation = -14.496822 kcal Electronic energy + Delta-G solvation = -23374.381618 eV Core-core repulsion = 19962.482595 eV Total energy + Delta-G solvation = -3411.899022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43939 -39.09848 -37.81655 -35.38625 -33.75613 -32.42586 -31.30769 -30.80400 -29.50764 -27.40608 -26.96180 -24.30582 -23.24051 -22.71227 -21.53763 -19.55679 -19.18443 -17.98455 -16.90125 -16.71262 -16.43107 -15.84120 -15.66587 -15.22263 -14.45329 -14.35194 -14.10324 -13.83278 -13.42725 -13.14843 -12.79939 -12.64173 -12.59105 -12.04820 -11.89818 -11.75822 -11.50538 -11.34940 -11.24227 -10.99863 -10.82557 -10.40181 -10.17898 -10.16720 -9.64724 -9.31979 -9.10263 -9.04917 -8.50003 -8.26931 -8.09135 -7.71881 -6.12474 -4.22120 0.81259 1.63091 2.04178 3.24861 3.30368 3.31341 3.37071 3.96238 4.07032 4.15752 4.40578 4.63076 4.82384 4.95070 5.10979 5.18559 5.18910 5.21230 5.28901 5.41022 5.50974 5.60042 5.79566 6.17599 6.21490 6.28046 6.40120 6.47274 6.54883 6.67769 6.74062 7.05178 7.21521 7.37380 7.44082 7.45900 7.61938 7.74179 7.90410 8.16416 8.18169 8.67190 8.77702 9.14313 9.45385 10.92723 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.004747 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.108411 B = 5897.163158 C = 6614.639830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.518 3.482 15 O -0.537 6.537 16 C -0.185 4.185 17 C -0.050 4.050 18 C -0.071 4.071 19 C 0.073 3.927 20 N -0.464 5.464 21 C 0.018 3.982 22 C 0.068 3.932 23 O -0.310 6.310 24 C 0.027 3.973 25 C -0.020 4.020 26 H 0.020 0.980 27 H 0.048 0.952 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.265 0.735 32 H 0.388 0.612 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.419 8.884 6.336 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.345 5.345 14 C 0.305 3.695 15 O -0.418 6.418 16 C -0.206 4.206 17 C -0.071 4.071 18 C -0.073 4.073 19 C -0.085 4.085 20 N -0.173 5.173 21 C -0.140 4.140 22 C 0.021 3.979 23 O -0.222 6.222 24 C -0.068 4.068 25 C -0.047 4.047 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.599 8.660 5.371 14.703 hybrid contribution 2.122 -0.158 0.140 2.133 sum -8.476 8.503 5.511 13.210 Atomic orbital electron populations 1.21817 0.98283 0.97897 1.01221 1.21925 0.92610 0.99806 1.02182 1.18779 0.94128 0.89174 0.81020 0.93224 1.21193 0.90738 1.39145 1.06292 0.92191 1.24877 0.98545 0.94793 0.95379 1.69888 1.35203 1.37484 1.09342 0.86529 0.84935 0.78306 0.77451 1.20177 1.21137 1.20186 1.46526 1.14312 1.55194 1.18456 1.18354 0.83015 0.80344 0.87802 1.90853 1.50779 1.59944 1.40196 1.23379 0.97776 1.00306 0.99144 1.22078 0.93209 0.95689 0.96118 1.19602 0.94251 0.99503 0.93968 1.22631 0.90114 0.99401 0.96359 1.67353 1.40108 1.10655 0.99191 1.22746 0.91006 1.02627 0.97591 1.19814 0.92527 0.97997 0.87549 1.86129 1.35989 1.81106 1.18966 1.23042 0.95528 1.00602 0.87626 1.20849 0.99726 0.94763 0.89321 0.96049 0.93302 0.94204 0.95135 0.88378 0.92526 0.77974 0.85170 0.84574 0.83020 0.83236 0.88201 0.92565 0.92915 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.98 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.70 11.29 55.43 0.63 -24.07 16 9 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.70 -14.01 5.02 -56.32 -0.28 -14.30 16 14 C 0.52 9.75 5.39 -12.96 -0.07 9.68 16 15 O -0.54 -11.72 9.27 5.20 0.05 -11.67 16 16 C -0.18 -2.54 9.94 -37.50 -0.37 -2.91 16 17 C -0.05 -0.62 9.84 -37.16 -0.37 -0.99 16 18 C -0.07 -1.08 4.54 -104.93 -0.48 -1.55 16 19 C 0.07 1.07 10.96 -17.04 -0.19 0.88 16 20 N -0.46 -7.38 10.34 -12.72 -0.13 -7.51 16 21 C 0.02 0.27 10.21 -17.28 -0.18 0.10 16 22 C 0.07 1.15 6.70 -39.14 -0.26 0.88 16 23 O -0.31 -5.05 10.51 -19.52 -0.21 -5.25 16 24 C 0.03 0.30 9.82 101.05 0.99 1.29 16 25 C -0.02 -0.35 6.68 -38.65 -0.26 -0.61 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 28 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 29 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.35 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.39 6.75 8.52 -40.82 -0.35 6.40 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.15 1.86 6.29 -52.49 -0.33 1.53 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 39 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 40 H 0.13 2.46 7.10 -52.49 -0.37 2.09 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -31.80 330.50 -6.87 -38.67 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.33 Total: 8.87 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.56 Total: -5.21 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.21 Total: -45.88 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.16 Total: -16.93 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.80 -6.87 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492619501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.170 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds