Wall clock time and date at job start Tue Mar 31 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47456 * 2 1 4 4 H 1.08999 * 109.47586 * 304.99850 * 3 2 1 5 5 C 1.50707 * 109.47199 * 184.99661 * 3 2 1 6 6 H 1.07999 * 119.99731 * 239.99712 * 5 3 2 7 7 C 1.37878 * 119.99704 * 60.00425 * 5 3 2 8 8 N 1.31510 * 119.99718 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99802 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47210 * 59.99595 * 9 7 5 11 11 H 1.48503 * 109.46964 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46830 * 299.99571 * 9 7 5 13 13 N 1.46504 * 109.46949 * 64.99984 * 3 2 1 14 14 C 1.34774 * 119.99862 * 274.99469 * 13 3 2 15 15 O 1.21692 * 120.00324 * 0.02562 * 14 13 3 16 16 C 1.46431 * 120.00074 * 179.97438 * 14 13 3 17 17 C 1.34800 * 120.00067 * 173.22710 * 16 14 13 18 18 C 1.47216 * 120.00085 * 349.08434 * 17 16 14 19 19 C 1.39850 * 120.55776 * 136.56043 * 18 17 16 20 20 N 1.31616 * 120.64810 * 179.97438 * 19 18 17 21 21 C 1.31925 * 121.96939 * 0.02984 * 20 19 18 22 22 C 1.38858 * 121.05535 * 359.97438 * 21 20 19 23 23 O 1.35929 * 120.38744 * 180.02562 * 22 21 20 24 24 C 1.42899 * 116.99801 * 0.02562 * 23 22 21 25 25 C 1.38807 * 119.22415 * 359.71232 * 22 21 20 26 26 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46461 * 59.99877 * 1 2 3 28 28 H 1.08995 * 109.46841 * 300.00356 * 1 2 3 29 29 H 1.09007 * 109.47009 * 120.00156 * 2 1 3 30 30 H 1.09001 * 109.47251 * 239.99798 * 2 1 3 31 31 H 0.97006 * 119.99650 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99841 * 95.00150 * 13 3 2 33 33 H 1.07998 * 119.99680 * 353.23311 * 16 14 13 34 34 H 1.07996 * 120.00057 * 169.08978 * 17 16 14 35 35 H 1.08001 * 119.67361 * 0.02562 * 19 18 17 36 36 H 1.07992 * 119.47239 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.47031 * 179.97438 * 24 23 22 38 38 H 1.08999 * 109.47400 * 299.99476 * 24 23 22 39 39 H 1.09001 * 109.47365 * 59.99630 * 24 23 22 40 40 H 1.08000 * 120.89792 * 180.29578 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0051 0.8810 -1.3817 10 1 6.5976 0.1471 -0.2348 11 1 6.3979 0.2165 -2.6503 12 1 6.4996 2.2813 -1.3821 13 7 1.6525 2.0974 1.2519 14 6 0.4353 2.6644 1.3669 15 8 -0.3421 2.6320 0.4312 16 6 0.0476 3.3186 2.6183 17 6 -1.1115 4.0030 2.6902 18 6 -1.8689 4.2988 1.4630 19 6 -3.2581 4.1413 1.4296 20 7 -3.9372 4.4058 0.3336 21 6 -3.3474 4.8253 -0.7694 22 6 -1.9718 5.0080 -0.8211 23 8 -1.3783 5.4413 -1.9646 24 6 -2.2313 5.6925 -3.0833 25 6 -1.2108 4.7492 0.3105 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.8294 -0.0619 -2.9494 32 1 2.2720 2.1230 1.9978 33 1 0.6905 3.2528 3.4836 34 1 -1.4844 4.3344 3.6480 35 1 -3.7789 3.8001 2.3121 36 1 -3.9440 5.0307 -1.6458 37 1 -1.6320 6.0325 -3.9280 38 1 -2.7546 4.7756 -3.3544 39 1 -2.9578 6.4615 -2.8208 40 1 -0.1396 4.8867 0.3018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492619501.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:52 Heat of formation + Delta-G solvation = -36.525537 kcal Electronic energy + Delta-G solvation = -23375.336855 eV Core-core repulsion = 19962.482595 eV Total energy + Delta-G solvation = -3412.854259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.64123 -40.56237 -39.00823 -37.10244 -35.04425 -34.26969 -32.93901 -32.19596 -30.73069 -28.96552 -28.29720 -25.70273 -24.86122 -24.07053 -22.94712 -21.36738 -20.60707 -19.30052 -18.27460 -18.06055 -17.73479 -17.30262 -17.00891 -16.77728 -16.13034 -15.94747 -15.27576 -15.10977 -14.78057 -14.54438 -14.29463 -14.03604 -13.84621 -13.69975 -13.41317 -13.17927 -13.04094 -12.87850 -12.72581 -12.66218 -12.38222 -12.19311 -12.05031 -11.60974 -11.40498 -11.05559 -10.66685 -10.51092 -10.36021 -9.67278 -9.34690 -9.22788 -8.16160 -6.33593 -0.33477 0.41802 0.90270 1.43610 1.45401 1.53077 2.30860 2.37182 2.58599 2.81577 2.90235 3.13531 3.56609 3.70758 3.86281 4.03641 4.12824 4.19247 4.33731 4.38792 4.45239 4.47181 4.55838 4.66712 4.74815 4.75621 4.99538 5.03546 5.07557 5.21745 5.24549 5.43246 5.48746 5.56690 5.63746 5.67245 5.80980 5.98000 6.17802 6.31658 6.75543 6.98892 7.09020 7.34587 7.68585 8.88876 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.004747 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.108411 B = 5897.163158 C = 6614.639830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.282 3.718 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.701 5.701 14 C 0.510 3.490 15 O -0.573 6.573 16 C -0.197 4.197 17 C -0.025 4.025 18 C -0.079 4.079 19 C 0.071 3.929 20 N -0.478 5.478 21 C 0.014 3.986 22 C 0.050 3.950 23 O -0.341 6.341 24 C 0.018 3.982 25 C -0.045 4.045 26 H 0.040 0.960 27 H 0.019 0.981 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.172 0.828 34 H 0.192 0.808 35 H 0.188 0.812 36 H 0.174 0.826 37 H 0.116 0.884 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 9.364 8.845 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C 0.178 3.822 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.349 5.349 14 C 0.300 3.700 15 O -0.455 6.455 16 C -0.217 4.217 17 C -0.045 4.045 18 C -0.081 4.081 19 C -0.087 4.087 20 N -0.187 5.187 21 C -0.143 4.143 22 C 0.003 3.997 23 O -0.254 6.254 24 C -0.076 4.076 25 C -0.072 4.072 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.237 0.763 33 H 0.189 0.811 34 H 0.209 0.791 35 H 0.205 0.795 36 H 0.191 0.809 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.944 9.160 7.916 16.320 hybrid contribution 2.126 -0.237 -0.705 2.253 sum -8.818 8.923 7.211 14.470 Atomic orbital electron populations 1.21620 0.97025 0.98720 1.00086 1.21764 0.93606 0.99374 1.01055 1.18260 0.93379 0.88957 0.81567 0.98768 1.21574 0.91603 1.38827 1.06633 0.91093 1.25768 1.03248 0.94411 0.95042 1.70054 1.37111 1.38410 1.09886 0.85454 0.79231 0.78420 0.77568 1.18815 1.21279 1.19711 1.46272 1.15563 1.55746 1.17312 1.19253 0.81899 0.79593 0.89271 1.90852 1.51648 1.60925 1.42093 1.23354 0.99223 1.01533 0.97593 1.22598 0.91596 0.93433 0.96885 1.19977 0.94944 0.98781 0.94431 1.23221 0.90031 0.98354 0.97083 1.67422 1.40515 1.11008 0.99727 1.23080 0.90607 1.02185 0.98427 1.20049 0.93316 0.98579 0.87717 1.86084 1.38062 1.81273 1.19958 1.23353 0.96042 1.01554 0.86679 1.20908 0.98815 0.96539 0.90942 0.94074 0.96176 0.93472 0.94130 0.91367 0.92708 0.76265 0.81060 0.79143 0.79495 0.80908 0.86566 0.92346 0.90447 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.51 71.98 0.61 -4.80 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.49 2.24 44.24 0.10 14.59 16 4 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 5 C -0.55 -29.08 8.73 25.60 0.22 -28.86 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.92 -53.14 11.29 21.45 0.24 -52.90 16 9 Si 0.97 42.31 29.54 68.60 2.03 44.34 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.70 -28.24 5.02 -450.33 -2.26 -30.50 16 14 C 0.51 19.13 5.39 86.38 0.47 19.60 16 15 O -0.57 -25.75 9.27 -4.32 -0.04 -25.79 16 16 C -0.20 -4.85 9.94 23.62 0.23 -4.61 16 17 C -0.03 -0.53 9.84 23.84 0.23 -0.30 16 18 C -0.08 -2.29 4.54 -20.06 -0.09 -2.38 16 19 C 0.07 1.92 10.96 85.12 0.93 2.85 16 20 N -0.48 -14.57 10.34 -194.15 -2.01 -16.58 16 21 C 0.01 0.43 10.21 84.83 0.87 1.29 16 22 C 0.05 1.75 6.70 22.55 0.15 1.90 16 23 O -0.34 -11.64 10.51 -92.75 -0.97 -12.61 16 24 C 0.02 0.40 9.82 113.37 1.11 1.51 16 25 C -0.05 -1.61 6.68 22.87 0.15 -1.46 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.02 1.00 7.84 -2.39 -0.02 0.98 16 28 H 0.05 2.08 5.64 -2.39 -0.01 2.07 16 29 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.07 3.84 5.95 -2.39 -0.01 3.82 16 31 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 32 H 0.40 13.60 8.52 -92.71 -0.79 12.81 16 33 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 34 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.17 4.17 6.29 -2.91 -0.02 4.15 16 37 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.25 7.67 -2.39 -0.02 1.23 16 39 H 0.08 1.31 7.67 -2.39 -0.02 1.29 16 40 H 0.11 4.30 7.10 -2.91 -0.02 4.28 16 Total: -1.00 -73.50 330.50 2.87 -70.63 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.27 Total: 28.59 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.61 Total: -5.17 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -4.02 Total: -99.98 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -1.01 Total: -38.41 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -73.50 2.87 -70.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492619501.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.105 kcal (2) G-P(sol) polarization free energy of solvation -73.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds