Wall clock time and date at job start Tue Mar 31 2020 06:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47074 * 2 1 4 4 H 1.09003 * 109.47425 * 54.99769 * 3 2 1 5 5 C 1.50699 * 109.46937 * 175.00030 * 3 2 1 6 6 H 1.08002 * 119.99842 * 120.00378 * 5 3 2 7 7 C 1.37878 * 120.00079 * 299.99889 * 5 3 2 8 8 N 1.31515 * 119.99826 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00002 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47351 * 59.99967 * 9 7 5 11 11 H 1.48496 * 109.47434 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47317 * 300.00309 * 9 7 5 13 13 N 1.46505 * 109.47341 * 295.00082 * 3 2 1 14 14 C 1.34771 * 120.00238 * 84.99810 * 13 3 2 15 15 O 1.21697 * 119.99960 * 0.02562 * 14 13 3 16 16 C 1.46431 * 120.00215 * 180.02562 * 14 13 3 17 17 C 1.34802 * 120.00110 * 186.71015 * 16 14 13 18 18 C 1.47225 * 119.99989 * 11.51743 * 17 16 14 19 19 C 1.39842 * 120.55836 * 46.22637 * 18 17 16 20 20 N 1.31617 * 120.65044 * 179.97438 * 19 18 17 21 21 C 1.31927 * 121.96508 * 0.02562 * 20 19 18 22 22 C 1.38854 * 121.05805 * 359.97438 * 21 20 19 23 23 O 1.35926 * 120.38811 * 180.02562 * 22 21 20 24 24 C 1.42896 * 116.99959 * 0.02562 * 23 22 21 25 25 C 1.38812 * 119.22332 * 359.74943 * 22 21 20 26 26 H 1.09007 * 109.47041 * 59.99810 * 1 2 3 27 27 H 1.09000 * 109.47066 * 299.99906 * 1 2 3 28 28 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46971 * 120.00311 * 2 1 3 30 30 H 1.08998 * 109.46661 * 239.99770 * 2 1 3 31 31 H 0.96996 * 119.99522 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99607 * 265.00597 * 13 3 2 33 33 H 1.07991 * 120.00067 * 6.70861 * 16 14 13 34 34 H 1.07994 * 119.99973 * 191.52118 * 17 16 14 35 35 H 1.08004 * 119.67949 * 0.02562 * 19 18 17 36 36 H 1.07995 * 119.47113 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.47139 * 179.97438 * 24 23 22 38 38 H 1.09000 * 109.46942 * 299.99650 * 24 23 22 39 39 H 1.08996 * 109.47695 * 59.99314 * 24 23 22 40 40 H 1.07995 * 120.89118 * 180.27127 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1728 9 14 6.0049 0.8811 1.3818 10 1 6.4995 2.2814 1.3821 11 1 6.3979 0.2166 2.6503 12 1 6.5975 0.1472 0.2348 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3419 2.6325 -0.4310 16 6 0.0476 3.3186 -2.6184 17 6 -1.1122 4.0018 -2.6907 18 6 -1.8641 4.3079 -1.4625 19 6 -1.2094 4.8163 -0.3362 20 7 -1.8799 5.0911 0.7626 21 6 -3.1824 4.9018 0.8517 22 6 -3.9085 4.4004 -0.2204 23 8 -5.2503 4.2112 -0.1138 24 6 -5.8560 4.5506 1.1352 25 6 -3.2489 4.1000 -1.4043 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.8293 -0.0613 2.9498 32 1 2.2719 2.1231 -1.9978 33 1 0.6909 3.2538 -3.4834 34 1 -1.4899 4.3245 -3.6496 35 1 -0.1433 4.9861 -0.3685 36 1 -3.6923 5.1415 1.7730 37 1 -6.9267 4.3524 1.0854 38 1 -5.4117 3.9507 1.9294 39 1 -5.6918 5.6078 1.3433 40 1 -3.7878 3.7128 -2.2564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492619502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:54 Heat of formation + Delta-G solvation = -38.809879 kcal Electronic energy + Delta-G solvation = -23079.180319 eV Core-core repulsion = 19666.227003 eV Total energy + Delta-G solvation = -3412.953316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62907 -40.58502 -38.99253 -37.03525 -35.09029 -34.25433 -32.96100 -32.36090 -30.55935 -28.93949 -28.34203 -25.59338 -24.55940 -24.47835 -22.92768 -21.37219 -20.66984 -19.22757 -18.32501 -17.90001 -17.65029 -17.49131 -17.02921 -16.76293 -16.16203 -15.84322 -15.33053 -15.04488 -14.84379 -14.52047 -14.25756 -14.02928 -13.84639 -13.74792 -13.41731 -13.15698 -13.09651 -12.86346 -12.70703 -12.65298 -12.37867 -12.17636 -12.04088 -11.59175 -11.22376 -11.04652 -10.75078 -10.51662 -10.24672 -9.95084 -9.50207 -9.01705 -8.15022 -6.32460 -0.30205 0.41746 0.83390 1.44493 1.46401 1.54009 2.25435 2.38212 2.57957 2.82372 2.89990 3.14633 3.57486 3.71118 3.83055 4.01448 4.13672 4.21107 4.36959 4.38694 4.48001 4.53860 4.56378 4.65941 4.73834 4.76375 4.95185 5.05838 5.07176 5.22044 5.25641 5.43033 5.44914 5.56801 5.60275 5.67887 5.81977 5.99018 6.18946 6.26292 6.76921 7.05908 7.10507 7.35731 7.69867 8.89938 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023226 B = 0.003899 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.248684 B = 7179.323185 C = 7489.045044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.282 3.718 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.700 5.700 14 C 0.511 3.489 15 O -0.574 6.574 16 C -0.190 4.190 17 C -0.029 4.029 18 C -0.069 4.069 19 C 0.121 3.879 20 N -0.491 5.491 21 C 0.002 3.998 22 C 0.063 3.937 23 O -0.323 6.323 24 C 0.016 3.984 25 C -0.103 4.103 26 H 0.046 0.954 27 H 0.018 0.982 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.263 0.737 32 H 0.403 0.597 33 H 0.175 0.825 34 H 0.189 0.811 35 H 0.131 0.869 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 8.090 -10.959 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C 0.178 3.822 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.348 5.348 14 C 0.300 3.700 15 O -0.456 6.456 16 C -0.210 4.210 17 C -0.049 4.049 18 C -0.071 4.071 19 C -0.039 4.039 20 N -0.201 5.201 21 C -0.153 4.153 22 C 0.015 3.985 23 O -0.236 6.236 24 C -0.078 4.078 25 C -0.129 4.129 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.192 0.808 34 H 0.205 0.795 35 H 0.148 0.852 36 H 0.186 0.814 37 H 0.146 0.854 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.578 8.201 -9.506 18.493 hybrid contribution 0.943 -0.554 0.172 1.108 sum -12.634 7.647 -9.334 17.471 Atomic orbital electron populations 1.21624 0.97073 0.98702 1.00066 1.21762 0.93567 0.99407 1.01063 1.18253 0.93367 0.88946 0.81595 0.98794 1.21587 0.91624 1.38783 1.06649 0.90967 1.25779 1.03263 0.94446 0.95073 1.70057 1.37104 1.38442 1.09857 0.85449 0.79229 0.78434 0.77530 1.19675 1.21369 1.18790 1.46241 1.15531 1.55754 1.17308 1.19243 0.81920 0.79594 0.89226 1.90850 1.51756 1.60976 1.42052 1.23362 0.98954 1.01076 0.97623 1.22552 0.91808 0.93767 0.96725 1.19950 0.93112 0.98080 0.95937 1.22528 0.98622 0.95006 0.87749 1.67332 1.09041 1.16902 1.26819 1.23122 0.90533 1.02413 0.99253 1.19918 0.84535 0.98329 0.95689 1.86029 1.17190 1.81957 1.38447 1.23377 0.99833 1.01245 0.83382 1.21197 0.92755 1.01371 0.97570 0.93458 0.96231 0.94078 0.91403 0.94076 0.92747 0.76168 0.80811 0.79451 0.85167 0.81384 0.85439 0.92614 0.91371 0.81733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.48 2.24 44.24 0.10 14.58 16 4 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 5 C -0.55 -29.09 8.73 25.60 0.22 -28.87 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -53.37 11.29 21.45 0.24 -53.13 16 9 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 13 N -0.70 -27.99 5.02 -450.34 -2.26 -30.25 16 14 C 0.51 19.01 5.46 86.38 0.47 19.48 16 15 O -0.57 -25.91 9.52 -4.34 -0.04 -25.95 16 16 C -0.19 -4.60 9.92 23.62 0.23 -4.37 16 17 C -0.03 -0.61 9.82 23.84 0.23 -0.37 16 18 C -0.07 -2.00 4.42 -20.06 -0.09 -2.09 16 19 C 0.12 4.35 7.90 85.11 0.67 5.02 16 20 N -0.49 -18.56 10.34 -194.15 -2.01 -20.57 16 21 C 0.00 0.08 10.21 84.83 0.87 0.94 16 22 C 0.06 1.78 6.70 22.55 0.15 1.93 16 23 O -0.32 -7.76 10.51 -92.71 -0.97 -8.73 16 24 C 0.02 0.25 9.82 113.37 1.11 1.36 16 25 C -0.10 -2.78 9.90 22.87 0.23 -2.56 16 26 H 0.05 2.08 5.64 -2.38 -0.01 2.07 16 27 H 0.02 0.97 7.84 -2.39 -0.02 0.95 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 3.83 5.95 -2.39 -0.01 3.81 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.40 13.43 8.52 -92.71 -0.79 12.64 16 33 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 34 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.13 4.96 7.30 -2.91 -0.02 4.94 16 36 H 0.17 4.27 6.29 -2.91 -0.02 4.26 16 37 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 0.90 7.67 -2.39 -0.02 0.88 16 39 H 0.07 0.90 7.67 -2.39 -0.02 0.88 16 40 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -73.79 331.01 2.69 -71.11 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.27 Total: 27.34 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.43 Total: -4.30 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -4.02 Total: -103.95 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.02 Total: -34.68 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -73.79 2.69 -71.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492619502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.297 kcal (2) G-P(sol) polarization free energy of solvation -73.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds