Wall clock time and date at job start Tue Mar 31 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 C 1.50699 * 109.47161 * 240.00226 * 2 1 3 5 5 H 1.08005 * 119.99595 * 241.34508 * 4 2 1 6 6 C 1.37867 * 120.00228 * 61.34390 * 4 2 1 7 7 N 1.31517 * 120.00291 * 193.98047 * 6 4 2 8 8 Si 1.86803 * 120.00136 * 13.97649 * 6 4 2 9 9 H 1.48495 * 109.46991 * 84.54904 * 8 6 4 10 10 H 1.48496 * 109.47332 * 204.55047 * 8 6 4 11 11 H 1.48499 * 109.47050 * 324.54922 * 8 6 4 12 12 C 1.52995 * 109.47078 * 119.99866 * 2 1 3 13 13 N 1.46507 * 109.47363 * 300.00306 * 12 2 1 14 14 C 1.34781 * 119.99986 * 180.02562 * 13 12 2 15 15 O 1.21690 * 119.99938 * 0.02562 * 14 13 12 16 16 C 1.46431 * 119.99589 * 179.97438 * 14 13 12 17 17 C 1.34795 * 119.99556 * 180.02562 * 16 14 13 18 18 C 1.47228 * 119.99973 * 180.02562 * 17 16 14 19 19 C 1.39851 * 120.55650 * 359.97438 * 18 17 16 20 20 N 1.31617 * 120.64661 * 180.02562 * 19 18 17 21 21 C 1.31917 * 121.96464 * 359.97438 * 20 19 18 22 22 C 1.38850 * 121.06270 * 359.73704 * 21 20 19 23 23 O 1.35928 * 120.39152 * 180.28552 * 22 21 20 24 24 C 1.38807 * 119.22456 * 0.52055 * 22 21 20 25 25 H 1.09002 * 109.47015 * 309.36575 * 1 2 3 26 26 H 1.08995 * 109.47411 * 69.36966 * 1 2 3 27 27 H 1.09004 * 109.46919 * 189.36774 * 1 2 3 28 28 H 1.08995 * 109.47172 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47116 * 300.00143 * 3 2 1 30 30 H 1.09007 * 109.46900 * 59.99671 * 3 2 1 31 31 H 0.96997 * 120.00269 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47211 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.47596 * 60.00505 * 12 2 1 34 34 H 0.96998 * 119.99505 * 359.97438 * 13 12 2 35 35 H 1.07993 * 120.00067 * 0.02562 * 16 14 13 36 36 H 1.08003 * 120.00502 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.67258 * 0.03801 * 19 18 17 38 38 H 1.08003 * 119.46445 * 180.02562 * 21 20 19 39 39 H 0.96702 * 113.99669 * 270.23482 * 23 22 21 40 40 H 1.07997 * 120.89584 * 179.77927 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6353 -1.6010 -1.1315 6 6 1.7224 -0.2234 -2.4825 7 7 1.9157 -0.9726 -3.5459 8 14 1.0275 1.5006 -2.6684 9 1 2.1415 2.4816 -2.7084 10 1 0.2469 1.5864 -3.9287 11 1 0.1417 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4908 3.6696 15 8 2.5781 -1.4796 3.7812 16 6 1.3899 0.1998 4.8651 17 6 1.7164 -0.2601 6.0894 18 6 1.2256 0.4338 7.2915 19 6 0.4204 1.5715 7.1768 20 7 -0.0189 2.1936 8.2502 21 6 0.2753 1.7785 9.4674 22 6 1.0640 0.6539 9.6698 23 8 1.3538 0.2349 10.9300 24 6 1.5571 -0.0349 8.5701 25 1 -0.3633 0.6518 0.7945 26 1 -0.3634 0.3621 -0.9617 27 1 -0.3633 -1.0140 0.1673 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6980 -0.6298 -4.4268 32 1 3.1300 -0.7208 1.2495 33 1 1.6768 -1.7489 1.2493 34 1 0.9942 0.7582 2.3564 35 1 0.7687 1.0776 4.7660 36 1 2.3374 -1.1382 6.1886 37 1 0.1564 1.9431 6.1977 38 1 -0.1074 2.3196 10.3202 39 1 2.1588 0.6239 11.2983 40 1 2.1760 -0.9108 8.6963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493173414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:27 Heat of formation + Delta-G solvation = -15.383793 kcal Electronic energy + Delta-G solvation = -21859.563755 eV Core-core repulsion = 18447.626271 eV Total energy + Delta-G solvation = -3411.937484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83662 -39.47941 -37.80577 -36.83307 -34.74927 -33.36154 -31.80504 -31.44487 -29.87575 -26.56469 -26.36455 -25.12779 -24.29843 -24.00537 -21.67222 -19.86698 -19.16800 -18.48612 -17.72514 -17.40825 -16.60659 -16.08984 -15.77651 -15.28607 -15.06492 -14.88849 -14.42971 -13.96081 -13.73300 -13.64814 -13.24651 -12.99009 -12.88169 -12.67308 -12.42075 -12.22856 -12.07241 -11.70509 -11.41268 -11.10877 -10.47393 -10.35789 -10.20109 -10.09795 -9.92557 -9.76111 -9.70007 -9.15352 -8.84452 -8.71693 -8.54246 -8.45837 -6.17028 -4.14608 0.03594 0.65222 1.66903 3.18567 3.22074 3.28978 3.37015 3.41714 3.54034 3.64907 4.03533 4.33262 4.35310 4.38556 4.40783 4.68367 4.95608 5.06060 5.13577 5.25552 5.48882 5.55002 5.71419 5.96823 6.00897 6.02222 6.05091 6.13456 6.32460 6.44959 6.48795 6.59484 6.65871 6.72664 6.92344 6.99944 7.18248 7.39495 7.45930 7.69179 7.85997 8.41037 8.51020 8.88184 9.46671 10.96031 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.002665 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.643358 B =10503.462471 C =11028.298618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.713 5.713 14 C 0.535 3.465 15 O -0.550 6.550 16 C -0.181 4.181 17 C -0.042 4.042 18 C -0.095 4.095 19 C 0.104 3.896 20 N -0.464 5.464 21 C 0.079 3.921 22 C 0.056 3.944 23 O -0.491 6.491 24 C -0.086 4.086 25 H 0.022 0.978 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.398 0.602 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.394 0.606 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 7.050 24.765 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.018 3.982 13 N -0.363 5.363 14 C 0.322 3.678 15 O -0.430 6.430 16 C -0.202 4.202 17 C -0.062 4.062 18 C -0.098 4.098 19 C -0.054 4.054 20 N -0.173 5.173 21 C -0.079 4.079 22 C 0.010 3.990 23 O -0.301 6.301 24 C -0.112 4.112 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.233 0.767 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.179 0.821 39 H 0.250 0.750 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.832 6.708 24.451 25.513 hybrid contribution 0.374 0.859 -0.176 0.953 sum -2.458 7.567 24.276 25.546 Atomic orbital electron populations 1.22306 0.97813 0.99887 1.00025 1.18725 0.92539 0.92271 0.93774 1.22369 1.01235 0.98300 0.98620 1.20709 1.34123 1.12351 0.87977 0.90531 1.24977 0.94668 0.97322 0.95790 1.69949 1.48121 1.35908 0.98737 0.87291 0.79341 0.85522 0.76025 1.21347 1.23391 1.17498 1.21553 0.98704 0.95893 0.82011 1.46240 1.52312 1.31610 1.06154 1.18230 0.81118 0.84563 0.83889 1.90806 1.38552 1.26509 1.87120 1.23157 1.02541 1.01446 0.93029 1.22153 0.96089 0.97990 0.90004 1.20027 0.99305 0.96951 0.93479 1.23221 0.92880 0.91352 0.97951 1.67677 1.20584 1.30623 0.98444 1.23278 0.95833 0.93261 0.95481 1.19422 0.99513 0.95003 0.85086 1.84866 1.48573 1.70306 1.26310 1.22198 0.98058 0.99851 0.91070 0.95902 0.92473 0.93363 0.92756 0.93988 0.95149 0.92530 0.91811 0.91699 0.76720 0.85324 0.84152 0.81764 0.82108 0.74965 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.53 37.16 0.28 -2.56 16 2 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 3 C -0.15 -2.93 7.52 37.16 0.28 -2.65 16 4 C -0.51 -13.62 8.62 -34.44 -0.30 -13.92 16 5 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 6 C 0.08 2.07 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 8 Si 0.89 20.83 22.79 -169.99 -3.87 16.96 16 9 H -0.29 -6.70 7.10 56.52 0.40 -6.30 16 10 H -0.31 -7.38 7.11 56.52 0.40 -6.97 16 11 H -0.25 -5.29 4.65 56.52 0.26 -5.03 16 12 C 0.14 2.75 4.49 -4.04 -0.02 2.73 16 13 N -0.71 -11.18 5.00 -61.70 -0.31 -11.49 16 14 C 0.53 8.28 7.74 -12.96 -0.10 8.18 16 15 O -0.55 -10.62 16.23 5.20 0.08 -10.54 16 16 C -0.18 -1.99 9.42 -37.51 -0.35 -2.35 16 17 C -0.04 -0.43 9.48 -37.15 -0.35 -0.78 16 18 C -0.10 -0.86 5.88 -104.92 -0.62 -1.48 16 19 C 0.10 0.94 10.59 -17.04 -0.18 0.76 16 20 N -0.46 -4.56 10.34 -12.72 -0.13 -4.69 16 21 C 0.08 0.64 11.13 -17.29 -0.19 0.45 16 22 C 0.06 0.44 6.73 -39.14 -0.26 0.17 16 23 O -0.49 -3.06 13.52 -19.51 -0.26 -3.33 16 24 C -0.09 -0.70 9.90 -38.65 -0.38 -1.08 16 25 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 26 H 0.06 1.22 4.30 -51.93 -0.22 0.99 16 27 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 30 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.40 5.28 6.24 -40.82 -0.25 5.03 16 35 H 0.13 1.03 6.10 -52.49 -0.32 0.71 16 36 H 0.14 1.51 7.52 -52.48 -0.39 1.12 16 37 H 0.17 1.18 6.18 -52.49 -0.32 0.86 16 38 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.39 0.52 9.06 45.56 0.41 0.93 16 40 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -33.35 326.14 -5.35 -38.70 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.18 Total: 5.16 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.37 Total: -10.03 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.33 Total: -41.84 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.18 Total: -13.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -3.87 Total: 16.96 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.35 -5.35 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493173414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.320 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds