Wall clock time and date at job start Tue Mar 31 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 C 1.50699 * 109.47161 * 240.00226 * 2 1 3 5 5 H 1.08005 * 119.99595 * 241.34508 * 4 2 1 6 6 C 1.37867 * 120.00228 * 61.34390 * 4 2 1 7 7 N 1.31517 * 120.00291 * 193.98047 * 6 4 2 8 8 Si 1.86803 * 120.00136 * 13.97649 * 6 4 2 9 9 H 1.48495 * 109.46991 * 84.54904 * 8 6 4 10 10 H 1.48496 * 109.47332 * 204.55047 * 8 6 4 11 11 H 1.48499 * 109.47050 * 324.54922 * 8 6 4 12 12 C 1.52995 * 109.47078 * 119.99866 * 2 1 3 13 13 N 1.46507 * 109.47363 * 300.00306 * 12 2 1 14 14 C 1.34781 * 119.99986 * 180.02562 * 13 12 2 15 15 O 1.21690 * 119.99938 * 0.02562 * 14 13 12 16 16 C 1.46431 * 119.99589 * 179.97438 * 14 13 12 17 17 C 1.34795 * 119.99556 * 180.02562 * 16 14 13 18 18 C 1.47228 * 119.99973 * 180.02562 * 17 16 14 19 19 C 1.39851 * 120.55650 * 359.97438 * 18 17 16 20 20 N 1.31617 * 120.64661 * 180.02562 * 19 18 17 21 21 C 1.31917 * 121.96464 * 359.97438 * 20 19 18 22 22 C 1.38850 * 121.06270 * 359.73704 * 21 20 19 23 23 O 1.35928 * 120.39152 * 180.28552 * 22 21 20 24 24 C 1.38807 * 119.22456 * 0.52055 * 22 21 20 25 25 H 1.09002 * 109.47015 * 309.36575 * 1 2 3 26 26 H 1.08995 * 109.47411 * 69.36966 * 1 2 3 27 27 H 1.09004 * 109.46919 * 189.36774 * 1 2 3 28 28 H 1.08995 * 109.47172 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47116 * 300.00143 * 3 2 1 30 30 H 1.09007 * 109.46900 * 59.99671 * 3 2 1 31 31 H 0.96997 * 120.00269 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47211 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.47596 * 60.00505 * 12 2 1 34 34 H 0.96998 * 119.99505 * 359.97438 * 13 12 2 35 35 H 1.07993 * 120.00067 * 0.02562 * 16 14 13 36 36 H 1.08003 * 120.00502 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.67258 * 0.03801 * 19 18 17 38 38 H 1.08003 * 119.46445 * 180.02562 * 21 20 19 39 39 H 0.96702 * 113.99669 * 270.23482 * 23 22 21 40 40 H 1.07997 * 120.89584 * 179.77927 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6353 -1.6010 -1.1315 6 6 1.7224 -0.2234 -2.4825 7 7 1.9157 -0.9726 -3.5459 8 14 1.0275 1.5006 -2.6684 9 1 2.1415 2.4816 -2.7084 10 1 0.2469 1.5864 -3.9287 11 1 0.1417 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4908 3.6696 15 8 2.5781 -1.4796 3.7812 16 6 1.3899 0.1998 4.8651 17 6 1.7164 -0.2601 6.0894 18 6 1.2256 0.4338 7.2915 19 6 0.4204 1.5715 7.1768 20 7 -0.0189 2.1936 8.2502 21 6 0.2753 1.7785 9.4674 22 6 1.0640 0.6539 9.6698 23 8 1.3538 0.2349 10.9300 24 6 1.5571 -0.0349 8.5701 25 1 -0.3633 0.6518 0.7945 26 1 -0.3634 0.3621 -0.9617 27 1 -0.3633 -1.0140 0.1673 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6980 -0.6298 -4.4268 32 1 3.1300 -0.7208 1.2495 33 1 1.6768 -1.7489 1.2493 34 1 0.9942 0.7582 2.3564 35 1 0.7687 1.0776 4.7660 36 1 2.3374 -1.1382 6.1886 37 1 0.1564 1.9431 6.1977 38 1 -0.1074 2.3196 10.3202 39 1 2.1588 0.6239 11.2983 40 1 2.1760 -0.9108 8.6963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493173414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:27 Heat of formation + Delta-G solvation = -42.130329 kcal Electronic energy + Delta-G solvation = -21860.723572 eV Core-core repulsion = 18447.626271 eV Total energy + Delta-G solvation = -3413.097301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.45743 -40.76026 -38.51405 -38.24785 -35.54735 -34.98675 -33.45186 -32.36052 -30.59347 -28.04292 -27.82980 -27.01450 -25.31292 -24.63620 -22.65118 -21.06854 -20.67096 -19.10299 -18.71871 -18.06049 -18.01750 -17.46935 -16.95777 -16.54897 -16.28199 -16.14872 -15.41766 -14.94753 -14.87229 -14.66886 -14.52069 -14.33799 -14.26048 -13.98835 -13.74133 -13.57067 -13.22467 -12.94972 -12.38843 -12.26317 -12.14297 -11.95185 -11.89624 -11.74986 -11.14458 -10.97367 -10.61137 -10.50544 -10.38036 -10.37465 -10.02685 -9.43883 -8.29607 -6.31483 -0.67880 0.07102 0.85641 1.37838 1.38883 1.52207 2.28529 2.30998 2.35698 2.73104 3.02171 3.06700 3.45177 3.59735 3.80283 3.82149 4.00149 4.07804 4.18840 4.33788 4.35453 4.43020 4.60263 4.76265 4.84090 4.84622 4.87491 4.95178 4.98289 5.07951 5.18856 5.25653 5.31321 5.44242 5.49968 5.55484 5.73211 5.81047 6.30779 6.65838 6.68314 6.73885 6.87432 7.30251 7.33667 8.87643 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.002665 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.643358 B =10503.462471 C =11028.298618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.027 3.973 3 C -0.148 4.148 4 C -0.518 4.518 5 H 0.026 0.974 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.282 1.282 10 H -0.317 1.317 11 H -0.201 1.201 12 C 0.156 3.844 13 N -0.703 5.703 14 C 0.534 3.466 15 O -0.597 6.597 16 C -0.190 4.190 17 C -0.021 4.021 18 C -0.106 4.106 19 C 0.101 3.899 20 N -0.486 5.486 21 C 0.077 3.923 22 C 0.060 3.940 23 O -0.499 6.499 24 C -0.089 4.089 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.414 0.586 35 H 0.167 0.833 36 H 0.130 0.870 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.416 0.584 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 10.053 27.796 29.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 C -0.205 4.205 4 C -0.557 4.557 5 H 0.044 0.956 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.775 3.225 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.124 1.124 12 C 0.032 3.968 13 N -0.354 5.354 14 C 0.324 3.676 15 O -0.481 6.481 16 C -0.210 4.210 17 C -0.042 4.042 18 C -0.108 4.108 19 C -0.056 4.056 20 N -0.195 5.195 21 C -0.080 4.080 22 C 0.013 3.987 23 O -0.311 6.311 24 C -0.115 4.115 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.253 0.747 35 H 0.184 0.816 36 H 0.147 0.853 37 H 0.200 0.800 38 H 0.198 0.802 39 H 0.276 0.724 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.496 9.747 27.542 29.560 hybrid contribution 0.988 -0.228 -0.917 1.367 sum -3.508 9.519 26.624 28.492 Atomic orbital electron populations 1.22234 0.95975 1.00696 1.01044 1.18658 0.93853 0.93176 0.91711 1.22306 1.01000 0.96717 1.00464 1.21047 1.32883 1.11067 0.90662 0.95553 1.25895 0.95426 1.01751 0.95205 1.70119 1.50780 1.38356 0.99423 0.86320 0.79431 0.79742 0.77015 1.20908 1.24648 1.12446 1.21042 0.97396 0.95021 0.83351 1.45951 1.52561 1.31893 1.05001 1.18912 0.79989 0.83913 0.84784 1.90789 1.40737 1.28803 1.87740 1.23003 1.04345 1.02863 0.90811 1.22166 0.94500 0.97057 0.90473 1.19923 1.00311 0.97461 0.93133 1.23513 0.92397 0.91052 0.98677 1.67725 1.21401 1.31316 0.99101 1.23652 0.95311 0.93368 0.95711 1.19400 0.99139 0.94628 0.85512 1.84818 1.50098 1.70634 1.25573 1.22422 0.97888 1.00160 0.91041 0.91197 0.93631 0.94152 0.93526 0.94678 0.90412 0.92703 0.93885 0.94142 0.74749 0.81598 0.85263 0.79988 0.80195 0.72409 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 7.53 71.98 0.54 -4.69 16 2 C 0.03 1.13 0.50 -52.93 -0.03 1.10 16 3 C -0.15 -5.35 7.52 71.98 0.54 -4.81 16 4 C -0.52 -28.46 8.62 25.60 0.22 -28.24 16 5 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 6 C 0.01 0.82 5.32 84.65 0.45 1.27 16 7 N -0.95 -58.82 13.96 21.44 0.30 -58.52 16 8 Si 0.95 42.26 22.79 68.60 1.56 43.83 16 9 H -0.28 -12.34 7.10 99.48 0.71 -11.63 16 10 H -0.32 -14.69 7.11 99.48 0.71 -13.99 16 11 H -0.20 -7.45 4.65 99.48 0.46 -6.99 16 12 C 0.16 6.11 4.49 86.38 0.39 6.49 16 13 N -0.70 -20.43 5.00 -467.34 -2.34 -22.76 16 14 C 0.53 15.76 7.74 86.38 0.67 16.43 16 15 O -0.60 -23.29 16.23 -4.32 -0.07 -23.36 16 16 C -0.19 -3.64 9.42 23.61 0.22 -3.42 16 17 C -0.02 -0.39 9.48 23.84 0.23 -0.16 16 18 C -0.11 -1.65 5.88 -20.06 -0.12 -1.77 16 19 C 0.10 1.52 10.59 85.12 0.90 2.42 16 20 N -0.49 -8.18 10.34 -194.15 -2.01 -10.19 16 21 C 0.08 1.04 11.13 84.83 0.94 1.98 16 22 C 0.06 0.77 6.73 22.55 0.15 0.92 16 23 O -0.50 -4.84 13.52 -92.74 -1.25 -6.09 16 24 C -0.09 -1.24 9.90 22.87 0.23 -1.01 16 25 H 0.07 1.92 7.13 -2.39 -0.02 1.90 16 26 H 0.04 1.78 4.30 -2.39 -0.01 1.77 16 27 H 0.04 1.53 8.12 -2.39 -0.02 1.51 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.03 1.33 2.25 -2.38 -0.01 1.32 16 30 H 0.08 2.07 6.86 -2.38 -0.02 2.06 16 31 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.41 9.10 6.24 -92.71 -0.58 8.52 16 35 H 0.17 1.87 6.10 -2.91 -0.02 1.85 16 36 H 0.13 2.67 7.52 -2.91 -0.02 2.64 16 37 H 0.18 1.87 6.18 -2.91 -0.02 1.85 16 38 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.42 -0.12 9.06 -74.06 -0.67 -0.79 16 40 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -76.88 326.14 1.13 -75.74 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.40 Total: 14.86 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 5.34 Total: -13.50 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -4.04 Total: -91.48 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -1.32 Total: -29.45 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.56 Total: 43.83 kcal Total: -76.88 1.13 -75.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493173414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.611 kcal (2) G-P(sol) polarization free energy of solvation -76.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds