Wall clock time and date at job start Tue Mar 31 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47059 * 2 1 4 4 N 1.46501 * 109.46934 * 119.99483 * 2 1 3 5 5 C 1.46506 * 120.00025 * 121.45040 * 4 2 1 6 6 C 1.50698 * 109.47205 * 270.00088 * 5 4 2 7 7 H 1.08005 * 119.99656 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00150 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99918 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46852 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46906 * 120.00212 * 10 8 6 13 13 H 1.48497 * 109.47049 * 240.00147 * 10 8 6 14 14 C 1.34778 * 120.00562 * 301.44556 * 4 2 1 15 15 O 1.21520 * 120.00496 * 212.55844 * 14 4 2 16 16 C 1.48042 * 119.99293 * 32.56510 * 14 4 2 17 17 C 1.39553 * 119.99693 * 137.42077 * 16 14 4 18 18 C 1.37819 * 119.99762 * 179.97438 * 17 16 14 19 19 C 1.39564 * 120.00009 * 359.97438 * 18 17 16 20 20 C 1.48037 * 119.99788 * 180.02562 * 19 18 17 21 21 N 1.34771 * 119.99538 * 179.97438 * 20 19 18 22 22 O 1.21523 * 120.00008 * 0.02562 * 20 19 18 23 23 C 1.39551 * 119.99609 * 0.27643 * 19 18 17 24 24 C 1.37818 * 120.00474 * 359.46692 * 23 19 18 25 25 H 1.09001 * 109.47332 * 253.44852 * 1 2 3 26 26 H 1.08993 * 109.47467 * 13.45595 * 1 2 3 27 27 H 1.09004 * 109.46666 * 133.45487 * 1 2 3 28 28 H 1.09002 * 109.47368 * 239.99594 * 2 1 3 29 29 H 1.09004 * 109.47360 * 223.90825 * 3 2 1 30 30 H 1.09007 * 109.47276 * 343.90487 * 3 2 1 31 31 H 1.09002 * 109.47698 * 103.90366 * 3 2 1 32 32 H 1.09007 * 109.46936 * 29.99709 * 5 4 2 33 33 H 1.08996 * 109.47522 * 149.99493 * 5 4 2 34 34 H 0.96996 * 120.00126 * 180.02562 * 9 8 6 35 35 H 1.07997 * 120.00397 * 359.97121 * 17 16 14 36 36 H 1.07996 * 120.00183 * 179.97438 * 18 17 16 37 37 H 0.97000 * 120.00260 * 0.02562 * 21 20 19 38 38 H 0.96999 * 119.99927 * 179.72422 * 21 20 19 39 39 H 1.08010 * 119.99733 * 179.70521 * 23 19 18 40 40 H 1.08003 * 120.00349 * 180.23286 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8866 -1.8629 1.0622 6 6 2.0415 -3.1089 0.9955 7 1 0.9653 -3.0349 1.0482 8 6 2.6423 -4.3432 0.8673 9 7 3.9528 -4.4333 0.8037 10 14 1.5947 -5.8878 0.7853 11 1 0.1596 -5.5180 0.8791 12 1 1.8434 -6.5868 -0.5011 13 1 1.9487 -6.7863 1.9134 14 6 1.6688 -0.2473 2.4202 15 8 2.4410 -0.3622 3.3514 16 6 0.3442 0.3795 2.6299 17 6 -0.4059 0.0629 3.7633 18 6 -1.6389 0.6468 3.9589 19 6 -2.1370 1.5552 3.0237 20 6 -3.4612 2.1828 3.2341 21 7 -3.9419 3.0604 2.3313 22 8 -4.1142 1.9074 4.2213 23 6 -1.3891 1.8678 1.8878 24 6 -0.1539 1.2879 1.6948 25 1 -0.3634 -0.2928 0.9851 26 1 -0.3634 0.9994 -0.2391 27 1 -0.3633 -0.7069 -0.7460 28 1 1.8934 -0.5139 -0.8899 29 1 2.8591 1.5383 -0.7127 30 1 1.2301 2.1142 -0.2849 31 1 2.3939 1.7028 0.9975 32 1 3.4772 -1.7752 0.1502 33 1 3.5532 -1.9216 1.9225 34 1 4.3754 -5.3017 0.7131 35 1 -0.0203 -0.6398 4.4871 36 1 -2.2196 0.4015 4.8357 37 1 -3.4205 3.2805 1.5435 38 1 -4.8113 3.4686 2.4671 39 1 -1.7767 2.5672 1.1617 40 1 0.4266 1.5327 0.8175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522236646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:27 Heat of formation + Delta-G solvation = 5.282903 kcal Electronic energy + Delta-G solvation = -23526.212461 eV Core-core repulsion = 20115.171152 eV Total energy + Delta-G solvation = -3411.041309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.40118 -40.68985 -38.95488 -37.87733 -35.39117 -34.89308 -33.58855 -32.15430 -31.50674 -29.23461 -27.95504 -26.30527 -24.51429 -24.18859 -22.89219 -21.97494 -19.91723 -19.26933 -18.67538 -17.94784 -17.77628 -17.37060 -16.65534 -16.40984 -16.29331 -15.87699 -15.68714 -15.29603 -15.24135 -14.83177 -14.58479 -14.16063 -13.94028 -13.59708 -13.51689 -13.41962 -13.19051 -12.85424 -12.76241 -12.46814 -12.17861 -12.15021 -11.99523 -11.66432 -11.44333 -11.16141 -10.87219 -10.71828 -10.67522 -10.05039 -9.44420 -9.31363 -8.24461 -6.41028 -0.49306 0.36771 1.34852 1.36060 1.40046 1.49853 1.88171 2.25358 2.38785 2.49539 2.81213 3.04685 3.48647 3.70865 3.82787 3.90195 3.95255 4.13813 4.23346 4.30846 4.41329 4.57072 4.67662 4.72713 4.88224 4.90176 4.99913 5.03494 5.11496 5.18428 5.21033 5.25942 5.32195 5.48752 5.57903 5.71820 5.88069 5.89241 6.03267 6.42982 6.66169 6.72500 7.12697 7.29329 7.32857 8.82016 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.004624 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.416739 B = 6053.806441 C = 6573.458395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.121 3.879 3 C -0.175 4.175 4 N -0.611 5.611 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.057 0.943 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.266 1.266 12 H -0.269 1.269 13 H -0.283 1.283 14 C 0.561 3.439 15 O -0.584 6.584 16 C -0.136 4.136 17 C -0.088 4.088 18 C -0.090 4.090 19 C -0.117 4.117 20 C 0.564 3.436 21 N -0.822 5.822 22 O -0.587 6.587 23 C -0.104 4.104 24 C -0.085 4.085 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.045 0.955 32 H 0.025 0.975 33 H -0.004 1.004 34 H 0.268 0.732 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.420 0.580 38 H 0.415 0.585 39 H 0.188 0.812 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.147 18.017 -6.559 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.018 3.982 3 C -0.233 4.233 4 N -0.343 5.343 5 C 0.142 3.858 6 C -0.584 4.584 7 H 0.075 0.925 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.194 1.194 13 H -0.209 1.209 14 C 0.351 3.649 15 O -0.464 6.464 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.121 4.121 20 C 0.350 3.650 21 N -0.387 5.387 22 O -0.469 6.469 23 C -0.122 4.122 24 C -0.101 4.101 25 H 0.091 0.909 26 H 0.141 0.859 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.139 0.861 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.014 0.986 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.253 0.747 38 H 0.248 0.752 39 H 0.205 0.795 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -13.854 17.562 -5.482 23.030 hybrid contribution 0.225 -1.478 0.253 1.516 sum -13.628 16.084 -5.229 21.720 Atomic orbital electron populations 1.23744 0.94039 1.04455 1.03155 1.21467 0.95479 0.93802 0.87430 1.22703 1.03709 0.94224 1.02615 1.48018 1.50860 1.30240 1.05162 1.18827 0.89253 0.81971 0.95778 1.21779 0.93563 0.92061 1.50991 0.92458 1.25835 0.96187 1.02405 0.94402 1.70062 1.10209 1.25941 1.50395 0.85392 0.78881 0.78657 0.78050 1.19039 1.19378 1.20863 1.18807 0.86485 0.77023 0.82602 1.90666 1.53607 1.57580 1.44590 1.20250 0.94611 1.01222 0.97911 1.21066 0.94500 0.99309 0.95858 1.21072 0.94404 0.95801 0.99669 1.20095 0.95130 0.99492 0.97349 1.18348 0.85298 0.78897 0.82425 1.43506 1.24419 1.45034 1.25747 1.90798 1.60979 1.63973 1.31115 1.21544 0.93350 1.00304 0.97017 1.23150 0.97579 0.91800 0.97614 0.90863 0.85942 0.92239 0.89173 0.90414 0.86142 0.93606 0.95731 0.98581 0.92332 0.86845 0.84854 0.74683 0.75247 0.79540 0.78332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.45 7.71 71.98 0.56 -3.90 16 2 C 0.12 3.50 3.27 44.99 0.15 3.65 16 3 C -0.18 -3.55 8.36 71.98 0.60 -2.95 16 4 N -0.61 -25.83 2.38 -805.32 -1.91 -27.75 16 5 C 0.26 14.11 5.32 85.63 0.46 14.57 16 6 C -0.55 -30.78 9.39 25.60 0.24 -30.54 16 7 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.63 5.46 84.65 0.46 1.09 16 9 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 10 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 14 C 0.56 24.45 5.86 86.84 0.51 24.96 16 15 O -0.58 -31.07 16.79 -3.78 -0.06 -31.13 16 16 C -0.14 -4.51 4.27 -20.04 -0.09 -4.60 16 17 C -0.09 -2.93 9.64 22.49 0.22 -2.71 16 18 C -0.09 -2.53 9.58 22.49 0.22 -2.31 16 19 C -0.12 -2.53 5.88 -20.04 -0.12 -2.65 16 20 C 0.56 11.60 8.05 86.84 0.70 12.30 16 21 N -0.82 -7.42 8.82 -175.48 -1.55 -8.97 16 22 O -0.59 -17.67 17.17 -3.79 -0.07 -17.73 16 23 C -0.10 -1.56 9.26 22.49 0.21 -1.35 16 24 C -0.08 -1.81 4.88 22.49 0.11 -1.70 16 25 H 0.07 2.06 4.00 -10.99 -0.04 2.02 16 26 H 0.12 1.41 5.23 -2.39 -0.01 1.40 16 27 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.09 2.73 7.81 -2.39 -0.02 2.71 16 29 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.12 1.19 6.17 -2.38 -0.01 1.17 16 31 H 0.04 1.15 6.82 -2.39 -0.02 1.14 16 32 H 0.02 1.34 7.93 -2.38 -0.02 1.32 16 33 H 0.00 -0.25 7.36 -2.39 -0.02 -0.27 16 34 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16 36 H 0.13 3.74 7.64 -2.91 -0.02 3.72 16 37 H 0.42 0.63 6.85 -92.71 -0.64 -0.01 16 38 H 0.41 2.71 8.93 -92.71 -0.83 1.88 16 39 H 0.19 0.56 6.39 -2.91 -0.02 0.54 16 40 H 0.20 3.33 1.06 -4.11 0.00 3.33 16 Total: -1.00 -84.21 322.90 2.55 -81.66 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -0.39 Total: 8.97 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.22 Total: 3.86 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -3.18 Total: -91.88 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -0.13 Total: -48.87 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -84.21 2.55 -81.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522236646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.945 kcal (2) G-P(sol) polarization free energy of solvation -84.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds