Wall clock time and date at job start Tue Mar 31 2020 06:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47382 * 2 1 4 4 N 1.46505 * 109.47565 * 120.00540 * 2 1 3 5 5 C 1.46503 * 119.99338 * 304.44530 * 4 2 1 6 6 C 1.50697 * 109.47130 * 263.60356 * 5 4 2 7 7 H 1.08002 * 119.99669 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00010 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00105 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99894 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47528 * 89.99880 * 10 8 6 12 12 H 1.48500 * 109.47157 * 209.99936 * 10 8 6 13 13 H 1.48500 * 109.47065 * 329.99383 * 10 8 6 14 14 C 1.34772 * 120.00159 * 124.44054 * 4 2 1 15 15 O 1.21360 * 120.00371 * 354.62104 * 14 4 2 16 16 C 1.49356 * 119.99816 * 174.61812 * 14 4 2 17 17 O 1.21372 * 119.99724 * 0.61607 * 16 14 4 18 18 N 1.34771 * 120.00050 * 180.61730 * 16 14 4 19 19 C 1.39725 * 120.00147 * 184.86891 * 18 16 14 20 20 C 1.38929 * 120.07816 * 144.63389 * 19 18 16 21 21 C 1.38088 * 119.92684 * 179.97438 * 20 19 18 22 22 C 1.38294 * 120.07290 * 0.02562 * 21 20 19 23 23 C 1.38291 * 120.15632 * 359.97438 * 22 21 20 24 24 C 1.38089 * 120.07241 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46749 * 299.99737 * 1 2 3 26 26 H 1.08993 * 109.46850 * 59.99664 * 1 2 3 27 27 H 1.08998 * 109.46798 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.47285 * 240.00431 * 2 1 3 29 29 H 1.08997 * 109.46839 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46956 * 300.00279 * 3 2 1 31 31 H 1.08996 * 109.46555 * 60.00044 * 3 2 1 32 32 H 1.09004 * 109.47143 * 23.60816 * 5 4 2 33 33 H 1.09003 * 109.46615 * 143.60798 * 5 4 2 34 34 H 0.96992 * 119.99690 * 180.02562 * 9 8 6 35 35 H 0.96998 * 119.99932 * 4.86767 * 18 16 14 36 36 H 1.08001 * 120.03544 * 359.70632 * 20 19 18 37 37 H 1.08001 * 119.96574 * 179.97438 * 21 20 19 38 38 H 1.08007 * 119.92395 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.96343 * 180.02562 * 23 22 21 40 40 H 1.08008 * 120.04189 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5860 -0.2495 2.5245 6 6 2.6234 0.6738 3.1096 7 1 3.5154 0.9088 2.5478 8 6 2.4338 1.2185 4.3619 9 7 1.3473 0.9327 5.0457 10 14 3.7194 2.3636 5.0868 11 1 3.4078 3.7639 4.7030 12 1 3.7119 2.2426 6.5668 13 1 5.0605 1.9944 4.5668 14 6 2.8654 -1.7319 1.0744 15 8 3.1471 -2.1597 -0.0259 16 6 3.4576 -2.3594 2.2935 17 8 3.1672 -1.9388 3.3944 18 7 4.3142 -3.3926 2.1713 19 6 4.7890 -4.0452 3.3119 20 6 5.0160 -5.4156 3.2863 21 6 5.4858 -6.0573 4.4151 22 6 5.7298 -5.3375 5.5704 23 6 5.5050 -3.9733 5.5995 24 6 5.0363 -3.3251 4.4739 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.6358 0.2780 2.4407 33 1 1.4641 -1.1168 3.1735 34 1 1.2138 1.3162 5.9265 35 1 4.6012 -3.6832 1.2915 36 1 4.8211 -5.9791 2.3857 37 1 5.6620 -7.1227 4.3960 38 1 6.0969 -5.8419 6.4521 39 1 5.6971 -3.4141 6.5034 40 1 4.8605 -2.2596 4.4973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523283413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:46 Heat of formation + Delta-G solvation = -27.300099 kcal Electronic energy + Delta-G solvation = -23633.766564 eV Core-core repulsion = 20221.312350 eV Total energy + Delta-G solvation = -3412.454214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53328 -39.10083 -37.59278 -36.15596 -34.36320 -32.80122 -31.26346 -30.70294 -29.43397 -27.21542 -26.73516 -24.78576 -22.97073 -22.67160 -21.94737 -20.23995 -18.84359 -17.59839 -16.82119 -16.53912 -16.44276 -15.80537 -15.16203 -14.90499 -14.36253 -14.27853 -13.93781 -13.61000 -13.52733 -13.15307 -13.07850 -12.63895 -12.32617 -12.29514 -11.84560 -11.77554 -11.58296 -11.32805 -11.07633 -11.01785 -10.85463 -10.77612 -10.56698 -10.20409 -10.01456 -9.94481 -9.59653 -8.82212 -8.62347 -8.26337 -7.96518 -7.79690 -6.02038 -4.02916 1.40380 1.59504 2.19251 2.91885 3.29466 3.36765 3.39993 3.81014 4.08123 4.10576 4.45577 4.97233 5.07336 5.12188 5.31992 5.34274 5.40275 5.58027 5.58616 5.73032 5.74950 5.83327 6.03460 6.08317 6.19439 6.27589 6.35199 6.50832 6.55563 6.62106 6.69505 6.74245 6.77828 6.91990 7.23416 7.37069 7.43837 7.60725 7.87226 8.10957 8.20730 8.38115 8.68331 8.96696 9.58642 11.06978 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.006517 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.491315 B = 4295.633600 C = 5947.153190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 C -0.154 4.154 4 N -0.553 5.553 5 C 0.227 3.773 6 C -0.507 4.507 7 H 0.053 0.947 8 C 0.069 3.931 9 N -0.890 5.890 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.508 3.492 15 O -0.564 6.564 16 C 0.487 3.513 17 O -0.428 6.428 18 N -0.664 5.664 19 C 0.155 3.845 20 C -0.150 4.150 21 C -0.106 4.106 22 C -0.143 4.143 23 C -0.101 4.101 24 C -0.120 4.120 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.261 0.739 35 H 0.415 0.585 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 -8.734 -4.435 10.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 C -0.212 4.212 4 N -0.284 5.284 5 C 0.108 3.892 6 C -0.546 4.546 7 H 0.072 0.928 8 C -0.133 4.133 9 N -0.529 5.529 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.290 3.710 15 O -0.446 6.446 16 C 0.269 3.731 17 O -0.295 6.295 18 N -0.313 5.313 19 C 0.061 3.939 20 C -0.170 4.170 21 C -0.125 4.125 22 C -0.162 4.162 23 C -0.119 4.119 24 C -0.140 4.140 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.252 0.748 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.180 -8.493 -4.031 10.288 hybrid contribution 0.833 0.573 0.183 1.028 sum 5.013 -7.919 -3.849 10.132 Atomic orbital electron populations 1.22126 0.95036 1.01974 1.02557 1.21039 0.94094 0.93578 0.88397 1.22088 1.01361 0.95455 1.02336 1.48371 1.41516 1.28067 1.10423 1.19936 0.95890 0.97376 0.75971 1.21166 1.05276 1.26708 1.01458 0.92848 1.24783 0.95399 0.96588 0.96548 1.69909 1.26149 1.44179 1.12682 0.86637 0.82163 0.80984 0.78433 1.20820 1.21209 1.20086 1.19760 0.80982 0.81933 0.88302 1.90637 1.62684 1.63963 1.27353 1.20430 0.80734 0.80919 0.91027 1.90985 1.55305 1.56680 1.26541 1.43236 1.45870 1.33370 1.08798 1.17787 0.97155 0.91067 0.87928 1.20893 1.04322 0.92199 0.99634 1.20849 0.99540 0.99432 0.92675 1.21089 1.02512 0.94476 0.98108 1.21083 0.98273 0.94513 0.98069 1.21518 0.98269 1.01924 0.92259 0.91195 0.91976 0.92800 0.89318 0.92812 0.92791 0.90353 0.94574 0.91884 0.92914 0.74834 0.85899 0.86076 0.86375 0.85863 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.10 37.16 0.34 -2.14 16 2 C 0.13 2.36 3.25 -67.93 -0.22 2.14 16 3 C -0.15 -2.64 8.91 37.16 0.33 -2.31 16 4 N -0.55 -11.65 2.38 -168.00 -0.40 -12.05 16 5 C 0.23 5.51 4.11 -5.19 -0.02 5.49 16 6 C -0.51 -13.36 6.82 -34.44 -0.23 -13.59 16 7 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 8 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 9 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 10 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.51 10.61 7.67 -11.63 -0.09 10.52 16 15 O -0.56 -11.73 15.82 5.49 0.09 -11.64 16 16 C 0.49 9.99 7.57 -11.63 -0.09 9.90 16 17 O -0.43 -10.10 9.57 5.48 0.05 -10.05 16 18 N -0.66 -11.17 5.32 -10.30 -0.05 -11.23 16 19 C 0.16 2.52 6.29 -83.75 -0.53 1.99 16 20 C -0.15 -1.99 9.97 -39.38 -0.39 -2.38 16 21 C -0.11 -1.27 10.04 -39.62 -0.40 -1.66 16 22 C -0.14 -1.78 10.04 -39.54 -0.40 -2.18 16 23 C -0.10 -1.47 10.04 -39.62 -0.40 -1.87 16 24 C -0.12 -2.08 8.70 -39.38 -0.34 -2.42 16 25 H 0.07 1.18 6.51 -51.93 -0.34 0.84 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.09 1.56 6.91 -51.92 -0.36 1.21 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.50 7.27 -51.93 -0.38 1.12 16 32 H 0.04 0.90 6.21 -51.93 -0.32 0.58 16 33 H 0.06 1.69 5.84 -51.93 -0.30 1.39 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.41 6.03 8.30 -40.82 -0.34 5.69 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 39 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 40 H 0.15 2.95 6.24 -52.48 -0.33 2.62 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -30.10 333.39 -7.40 -37.50 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.29 Total: 7.48 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -2.54 Total: 3.27 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.28 Total: -47.92 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.14 Total: -21.69 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.10 -7.40 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523283413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.203 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds