Wall clock time and date at job start Tue Mar 31 2020 06:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47382 * 2 1 4 4 N 1.46505 * 109.47565 * 120.00540 * 2 1 3 5 5 C 1.46503 * 119.99338 * 304.44530 * 4 2 1 6 6 C 1.50697 * 109.47130 * 263.60356 * 5 4 2 7 7 H 1.08002 * 119.99669 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00010 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00105 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99894 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47528 * 89.99880 * 10 8 6 12 12 H 1.48500 * 109.47157 * 209.99936 * 10 8 6 13 13 H 1.48500 * 109.47065 * 329.99383 * 10 8 6 14 14 C 1.34772 * 120.00159 * 124.44054 * 4 2 1 15 15 O 1.21360 * 120.00371 * 354.62104 * 14 4 2 16 16 C 1.49356 * 119.99816 * 174.61812 * 14 4 2 17 17 O 1.21372 * 119.99724 * 0.61607 * 16 14 4 18 18 N 1.34771 * 120.00050 * 180.61730 * 16 14 4 19 19 C 1.39725 * 120.00147 * 184.86891 * 18 16 14 20 20 C 1.38929 * 120.07816 * 144.63389 * 19 18 16 21 21 C 1.38088 * 119.92684 * 179.97438 * 20 19 18 22 22 C 1.38294 * 120.07290 * 0.02562 * 21 20 19 23 23 C 1.38291 * 120.15632 * 359.97438 * 22 21 20 24 24 C 1.38089 * 120.07241 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46749 * 299.99737 * 1 2 3 26 26 H 1.08993 * 109.46850 * 59.99664 * 1 2 3 27 27 H 1.08998 * 109.46798 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.47285 * 240.00431 * 2 1 3 29 29 H 1.08997 * 109.46839 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46956 * 300.00279 * 3 2 1 31 31 H 1.08996 * 109.46555 * 60.00044 * 3 2 1 32 32 H 1.09004 * 109.47143 * 23.60816 * 5 4 2 33 33 H 1.09003 * 109.46615 * 143.60798 * 5 4 2 34 34 H 0.96992 * 119.99690 * 180.02562 * 9 8 6 35 35 H 0.96998 * 119.99932 * 4.86767 * 18 16 14 36 36 H 1.08001 * 120.03544 * 359.70632 * 20 19 18 37 37 H 1.08001 * 119.96574 * 179.97438 * 21 20 19 38 38 H 1.08007 * 119.92395 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.96343 * 180.02562 * 23 22 21 40 40 H 1.08008 * 120.04189 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5860 -0.2495 2.5245 6 6 2.6234 0.6738 3.1096 7 1 3.5154 0.9088 2.5478 8 6 2.4338 1.2185 4.3619 9 7 1.3473 0.9327 5.0457 10 14 3.7194 2.3636 5.0868 11 1 3.4078 3.7639 4.7030 12 1 3.7119 2.2426 6.5668 13 1 5.0605 1.9944 4.5668 14 6 2.8654 -1.7319 1.0744 15 8 3.1471 -2.1597 -0.0259 16 6 3.4576 -2.3594 2.2935 17 8 3.1672 -1.9388 3.3944 18 7 4.3142 -3.3926 2.1713 19 6 4.7890 -4.0452 3.3119 20 6 5.0160 -5.4156 3.2863 21 6 5.4858 -6.0573 4.4151 22 6 5.7298 -5.3375 5.5704 23 6 5.5050 -3.9733 5.5995 24 6 5.0363 -3.3251 4.4739 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.6358 0.2780 2.4407 33 1 1.4641 -1.1168 3.1735 34 1 1.2138 1.3162 5.9265 35 1 4.6012 -3.6832 1.2915 36 1 4.8211 -5.9791 2.3857 37 1 5.6620 -7.1227 4.3960 38 1 6.0969 -5.8419 6.4521 39 1 5.6971 -3.4141 6.5034 40 1 4.8605 -2.2596 4.4973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523283413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:45 Heat of formation + Delta-G solvation = -45.586495 kcal Electronic energy + Delta-G solvation = -23634.559522 eV Core-core repulsion = 20221.312350 eV Total energy + Delta-G solvation = -3413.247172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.06673 -40.49306 -39.02032 -37.79359 -35.75289 -34.79443 -32.91101 -31.80746 -30.66121 -29.19307 -28.07622 -26.29677 -24.95088 -23.85175 -23.17811 -21.63838 -20.37933 -19.09146 -18.57073 -18.29889 -17.91098 -17.06619 -16.79282 -16.57544 -16.10338 -15.67596 -15.29977 -14.96433 -14.85676 -14.68619 -14.34588 -14.21813 -13.92767 -13.68602 -13.52385 -13.32844 -12.98437 -12.80730 -12.77557 -12.46946 -12.37222 -12.27702 -12.14670 -11.92143 -11.67901 -11.51349 -11.32065 -10.60825 -10.14319 -9.82413 -9.62904 -9.12677 -8.12096 -6.17850 0.13223 0.48706 0.69386 1.36037 1.38086 1.44011 1.47469 2.23140 2.40565 2.62856 2.91119 3.22097 3.41554 3.98728 4.03369 4.10443 4.21328 4.32898 4.37266 4.54377 4.58417 4.61468 4.65113 4.80902 4.89471 4.96675 5.11087 5.12790 5.20226 5.36493 5.37807 5.44662 5.46722 5.54071 5.61554 5.67283 5.78810 6.10553 6.13680 6.18359 6.34490 6.80258 6.86281 7.10365 7.46386 8.96481 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.006517 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.491315 B = 4295.633600 C = 5947.153190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.123 3.877 3 C -0.147 4.147 4 N -0.559 5.559 5 C 0.249 3.751 6 C -0.501 4.501 7 H 0.042 0.958 8 C 0.022 3.978 9 N -0.922 5.922 10 Si 0.945 3.055 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.279 1.279 14 C 0.504 3.496 15 O -0.563 6.563 16 C 0.484 3.516 17 O -0.469 6.469 18 N -0.647 5.647 19 C 0.126 3.874 20 C -0.142 4.142 21 C -0.098 4.098 22 C -0.133 4.133 23 C -0.114 4.114 24 C -0.150 4.150 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.425 0.575 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.130 0.870 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.421 -10.431 -5.241 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.021 3.979 3 C -0.205 4.205 4 N -0.289 5.289 5 C 0.129 3.871 6 C -0.540 4.540 7 H 0.060 0.940 8 C -0.177 4.177 9 N -0.562 5.562 10 Si 0.771 3.229 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.204 1.204 14 C 0.287 3.713 15 O -0.445 6.445 16 C 0.266 3.734 17 O -0.339 6.339 18 N -0.296 5.296 19 C 0.032 3.968 20 C -0.162 4.162 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.132 4.132 24 C -0.170 4.170 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.264 0.736 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.148 0.852 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.168 -10.211 -4.880 12.441 hybrid contribution 0.603 0.960 0.401 1.203 sum 5.772 -9.250 -4.479 11.788 Atomic orbital electron populations 1.22073 0.93141 1.02273 1.03386 1.21368 0.95687 0.93684 0.87146 1.22023 1.00421 0.95062 1.02949 1.48380 1.41756 1.28446 1.10302 1.19411 0.94970 0.95619 0.77149 1.21264 1.04951 1.26436 1.01372 0.93954 1.25453 0.97055 0.98133 0.97057 1.70010 1.27719 1.45516 1.12992 0.85770 0.79756 0.79764 0.77610 1.19502 1.21078 1.20407 1.19914 0.80917 0.81954 0.88561 1.90618 1.62695 1.63936 1.27206 1.20496 0.81081 0.81525 0.90339 1.90981 1.57069 1.58281 1.27616 1.43064 1.44530 1.32151 1.09844 1.18030 0.98983 0.92473 0.87277 1.21234 1.02935 0.90661 1.01370 1.21371 0.97363 1.01359 0.91499 1.21507 1.00649 0.93258 0.99674 1.21261 0.98508 0.96042 0.97420 1.21343 1.00932 1.00385 0.94357 0.93012 0.88383 0.92790 0.88521 0.94171 0.88930 0.92872 0.95419 0.94608 0.92974 0.73568 0.83189 0.81916 0.82930 0.85196 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.10 71.98 0.66 -3.89 16 2 C 0.12 4.33 3.25 44.99 0.15 4.47 16 3 C -0.15 -4.92 8.91 71.98 0.64 -4.28 16 4 N -0.56 -24.09 2.38 -803.78 -1.91 -26.00 16 5 C 0.25 12.61 4.11 85.63 0.35 12.97 16 6 C -0.50 -27.45 6.82 25.60 0.17 -27.27 16 7 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 8 C 0.02 1.23 5.46 84.65 0.46 1.70 16 9 N -0.92 -54.35 13.29 21.45 0.28 -54.07 16 10 Si 0.94 44.98 29.54 68.60 2.03 47.01 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 13 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 14 C 0.50 21.49 7.67 87.24 0.67 22.16 16 15 O -0.56 -23.18 15.82 -3.28 -0.05 -23.23 16 16 C 0.48 20.67 7.57 87.24 0.66 21.33 16 17 O -0.47 -23.57 9.57 -3.32 -0.03 -23.61 16 18 N -0.65 -22.12 5.32 -304.84 -1.62 -23.74 16 19 C 0.13 4.09 6.29 38.21 0.24 4.33 16 20 C -0.14 -3.40 9.97 22.40 0.22 -3.17 16 21 C -0.10 -1.94 10.04 22.25 0.22 -1.71 16 22 C -0.13 -2.89 10.04 22.30 0.22 -2.67 16 23 C -0.11 -3.30 10.04 22.25 0.22 -3.08 16 24 C -0.15 -5.44 8.70 22.40 0.19 -5.25 16 25 H 0.05 1.75 6.51 -2.39 -0.02 1.73 16 26 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 3.27 6.91 -2.38 -0.02 3.26 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 2.05 7.27 -2.39 -0.02 2.03 16 32 H 0.03 1.45 6.21 -2.38 -0.01 1.44 16 33 H 0.04 2.05 5.84 -2.39 -0.01 2.03 16 34 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.43 12.22 8.30 -92.71 -0.77 11.45 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 40 H 0.10 4.61 6.24 -2.91 -0.02 4.59 16 Total: -1.00 -68.24 333.39 4.08 -64.16 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.29 Total: 23.84 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 5.09 Total: 15.64 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -3.25 Total: -103.81 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.08 Total: -46.84 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -68.24 4.08 -64.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523283413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.574 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds