Wall clock time and date at job start Tue Mar 31 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47287 * 2 1 4 4 C 1.34327 * 126.44511 * 89.99775 * 3 2 1 5 5 N 1.34482 * 107.66817 * 179.76729 * 4 3 2 6 6 C 1.30258 * 108.69866 * 0.42090 * 5 4 3 7 7 C 1.50695 * 125.61514 * 179.83411 * 6 5 4 8 8 N 1.46900 * 109.46897 * 89.69894 * 7 6 5 9 9 C 1.46907 * 111.00171 * 293.95202 * 8 7 6 10 10 C 1.50700 * 109.46983 * 299.47576 * 9 8 7 11 11 H 1.08001 * 119.99801 * 356.22644 * 10 9 8 12 12 C 1.37875 * 119.99713 * 176.22311 * 10 9 8 13 13 N 1.31508 * 120.00437 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99631 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47335 * 60.00444 * 14 12 10 16 16 H 1.48507 * 109.46904 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47603 * 300.00453 * 14 12 10 18 18 C 1.46898 * 111.00225 * 169.99711 * 8 7 6 19 19 C 1.50698 * 109.47474 * 195.66622 * 18 8 7 20 20 C 1.34508 * 125.79282 * 89.99577 * 19 18 8 21 21 C 1.41389 * 106.84361 * 180.02562 * 20 19 18 22 22 C 1.34510 * 106.83562 * 0.02562 * 21 20 19 23 23 O 1.34301 * 108.42483 * 359.73532 * 22 21 20 24 24 O 1.33965 * 108.76184 * 359.57754 * 6 5 4 25 25 H 1.08994 * 109.47321 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46655 * 300.00137 * 1 2 3 27 27 H 1.09001 * 109.46951 * 60.00154 * 1 2 3 28 28 H 1.09008 * 109.46990 * 239.99699 * 2 1 3 29 29 H 1.09001 * 109.46951 * 119.99845 * 2 1 3 30 30 H 1.07999 * 126.16588 * 0.02562 * 4 3 2 31 31 H 1.08995 * 109.47177 * 209.69923 * 7 6 5 32 32 H 1.09004 * 109.47270 * 329.70172 * 7 6 5 33 33 H 1.08998 * 109.46608 * 59.47699 * 9 8 7 34 34 H 1.08996 * 109.46792 * 179.47358 * 9 8 7 35 35 H 0.96996 * 120.00623 * 179.97438 * 13 12 10 36 36 H 1.09005 * 109.47160 * 315.66550 * 18 8 7 37 37 H 1.08999 * 109.47003 * 75.66205 * 18 8 7 38 38 H 1.08001 * 126.58040 * 0.04726 * 20 19 18 39 39 H 1.07996 * 126.57946 * 179.97438 * 21 20 19 40 40 H 1.08007 * 125.78555 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2984 2.1731 1.0806 5 7 2.7278 3.3718 0.6477 6 6 2.7216 3.3721 -0.6549 7 6 3.1291 4.5262 -1.5341 8 7 4.5674 4.4399 -1.8201 9 6 5.3597 4.6345 -0.5984 10 6 5.0727 5.9986 -0.0256 11 1 4.4190 6.6785 -0.5516 12 6 5.6446 6.3784 1.1701 13 7 6.4410 5.5506 1.8104 14 14 5.2895 8.0694 1.8797 15 1 3.8306 8.2092 2.1195 16 1 6.0192 8.2309 3.1630 17 1 5.7356 9.1122 0.9213 18 6 4.9564 5.4030 -2.8588 19 6 6.3155 5.0386 -3.3982 20 6 6.5556 4.2200 -4.4381 21 6 7.9593 4.1607 -4.5972 22 6 8.4929 4.9462 -3.6446 23 8 7.4924 5.4797 -2.9248 24 8 2.2989 2.1756 -1.0841 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.1911 1.8687 2.1112 31 1 2.5697 4.4861 -2.4687 32 1 2.9159 5.4652 -1.0231 33 1 5.0944 3.8704 0.1322 34 1 6.4203 4.5564 -0.8370 35 1 6.8437 5.8179 2.6514 36 1 4.2262 5.3796 -3.6678 37 1 4.9920 6.4047 -2.4305 38 1 5.8178 3.7068 -5.0369 39 1 8.4993 3.5929 -5.3404 40 1 9.5470 5.1215 -3.4878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530904780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:16 Heat of formation + Delta-G solvation = 45.996349 kcal Electronic energy + Delta-G solvation = -23160.879398 eV Core-core repulsion = 19751.603557 eV Total energy + Delta-G solvation = -3409.275842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.75036 -41.96633 -37.04906 -34.16606 -34.03737 -32.57717 -32.29217 -30.67469 -28.88231 -27.09992 -25.99752 -24.16604 -23.38795 -21.87156 -21.19218 -20.97626 -20.07478 -19.56246 -17.10630 -16.44056 -16.24531 -16.15458 -15.52715 -15.00129 -14.59382 -14.44930 -14.17836 -14.12057 -13.71656 -13.29101 -12.93357 -12.45442 -12.34063 -12.28069 -12.19971 -11.83715 -11.72929 -11.43035 -11.20430 -10.98118 -10.94095 -10.82992 -10.65285 -10.28610 -10.00247 -9.72060 -9.62989 -9.38605 -8.31273 -8.23673 -7.94371 -7.38633 -5.92725 -3.99579 1.91624 2.30067 3.05180 3.17317 3.34015 3.36210 3.40308 3.42206 3.61795 4.49432 4.59393 4.88934 5.04837 5.12599 5.17018 5.29473 5.40621 5.45276 5.49351 5.50579 5.57504 5.67321 5.71153 5.83152 5.88127 6.04247 6.12304 6.23622 6.27528 6.38826 6.43408 6.55342 6.63932 6.86085 7.00033 7.13575 7.57840 7.72096 7.85387 7.98704 8.09631 8.30447 8.43682 9.03678 9.65340 11.14671 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.006142 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.376789 B = 4557.999502 C = 6550.938485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.032 4.032 3 C -0.069 4.069 4 C -0.038 4.038 5 N -0.451 5.451 6 C 0.218 3.782 7 C 0.153 3.847 8 N -0.537 5.537 9 C 0.184 3.816 10 C -0.543 4.543 11 H 0.054 0.946 12 C 0.074 3.926 13 N -0.886 5.886 14 Si 0.886 3.114 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.132 3.868 19 C 0.029 3.971 20 C -0.216 4.216 21 C -0.222 4.222 22 C -0.050 4.050 23 O -0.159 6.159 24 O -0.202 6.202 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.174 0.826 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 -7.370 -8.754 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.070 4.070 3 C -0.122 4.122 4 C -0.178 4.178 5 N -0.178 5.178 6 C 0.010 3.990 7 C 0.025 3.975 8 N -0.263 5.263 9 C 0.059 3.941 10 C -0.581 4.581 11 H 0.072 0.928 12 C -0.129 4.129 13 N -0.524 5.524 14 Si 0.714 3.286 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.204 1.204 18 C 0.005 3.995 19 C -0.023 4.023 20 C -0.236 4.236 21 C -0.241 4.241 22 C -0.118 4.118 23 O -0.054 6.054 24 O -0.090 6.090 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.191 0.809 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.075 -7.147 -8.189 12.451 hybrid contribution -0.186 0.856 0.446 0.983 sum -6.261 -6.291 -7.742 11.778 Atomic orbital electron populations 1.21794 0.94268 1.01951 1.02610 1.19929 0.95950 0.87182 1.03916 1.23243 1.07771 0.96056 0.85170 1.23086 1.04112 0.90665 0.99904 1.70695 1.16121 1.21789 1.09231 1.26145 0.97331 0.85320 0.90172 1.20252 0.90865 0.90749 0.95648 1.62566 1.02167 1.49032 1.12545 1.19905 0.92758 0.96629 0.84780 1.21398 1.29423 1.00663 1.06665 0.92806 1.24817 0.94759 0.96739 0.96573 1.69926 1.30858 1.35429 1.16153 0.86765 0.78466 0.84945 0.78438 1.20227 1.21348 1.20412 1.20373 0.87754 0.96731 0.94675 1.22313 0.86471 0.98482 0.95016 1.21427 0.95906 1.04327 1.01968 1.21694 0.94644 1.04999 1.02792 1.23916 0.93166 1.00072 0.94692 1.84180 1.14329 1.57091 1.49754 1.84356 1.64303 1.23888 1.36432 0.91857 0.92183 0.92426 0.90283 0.88991 0.80892 0.89974 0.88951 0.93679 0.95020 0.92951 0.89511 0.91113 0.84104 0.84262 0.78932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.90 37.16 0.37 -1.02 16 2 C -0.03 -0.36 6.49 -27.88 -0.18 -0.54 16 3 C -0.07 -1.12 6.64 -35.69 -0.24 -1.35 16 4 C -0.04 -0.70 11.80 -17.77 -0.21 -0.91 16 5 N -0.45 -9.99 10.52 -11.10 -0.12 -10.11 16 6 C 0.22 4.45 6.99 -12.95 -0.09 4.36 16 7 C 0.15 2.92 5.38 -4.98 -0.03 2.90 16 8 N -0.54 -11.38 4.65 -238.96 -1.11 -12.49 16 9 C 0.18 4.82 4.79 -4.97 -0.02 4.80 16 10 C -0.54 -14.80 7.34 -34.44 -0.25 -15.05 16 11 H 0.05 1.41 5.95 -52.49 -0.31 1.10 16 12 C 0.07 2.12 5.46 -17.82 -0.10 2.03 16 13 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 14 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.13 2.45 5.35 -4.98 -0.03 2.43 16 19 C 0.03 0.55 6.10 -35.63 -0.22 0.33 16 20 C -0.22 -3.63 10.81 -39.70 -0.43 -4.06 16 21 C -0.22 -3.44 10.91 -39.70 -0.43 -3.87 16 22 C -0.05 -0.82 12.09 29.41 0.36 -0.46 16 23 O -0.16 -3.27 10.08 5.71 0.06 -3.21 16 24 O -0.20 -3.77 10.78 5.36 0.06 -3.71 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 31 H 0.08 1.24 7.86 -51.93 -0.41 0.83 16 32 H 0.09 1.87 6.40 -51.93 -0.33 1.54 16 33 H 0.05 1.32 6.68 -51.93 -0.35 0.98 16 34 H 0.03 0.92 6.93 -51.93 -0.36 0.56 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.09 1.27 7.82 -51.93 -0.41 0.87 16 37 H 0.07 1.42 6.35 -51.93 -0.33 1.09 16 38 H 0.14 2.06 8.06 -52.49 -0.42 1.63 16 39 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.19 2.40 8.06 -52.48 -0.42 1.97 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -33.77 339.44 -7.22 -40.99 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.44 Total: 3.01 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -1.50 Total: -10.42 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.49 Total: -48.64 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: 0.12 Total: -6.92 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.77 -7.22 -40.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530904780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.987 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds