Wall clock time and date at job start Tue Mar 31 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47287 * 2 1 4 4 C 1.34327 * 126.44511 * 89.99775 * 3 2 1 5 5 N 1.34482 * 107.66817 * 179.76729 * 4 3 2 6 6 C 1.30258 * 108.69866 * 0.42090 * 5 4 3 7 7 C 1.50695 * 125.61514 * 179.83411 * 6 5 4 8 8 N 1.46900 * 109.46897 * 89.69894 * 7 6 5 9 9 C 1.46907 * 111.00171 * 293.95202 * 8 7 6 10 10 C 1.50700 * 109.46983 * 299.47576 * 9 8 7 11 11 H 1.08001 * 119.99801 * 356.22644 * 10 9 8 12 12 C 1.37875 * 119.99713 * 176.22311 * 10 9 8 13 13 N 1.31508 * 120.00437 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99631 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47335 * 60.00444 * 14 12 10 16 16 H 1.48507 * 109.46904 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47603 * 300.00453 * 14 12 10 18 18 C 1.46898 * 111.00225 * 169.99711 * 8 7 6 19 19 C 1.50698 * 109.47474 * 195.66622 * 18 8 7 20 20 C 1.34508 * 125.79282 * 89.99577 * 19 18 8 21 21 C 1.41389 * 106.84361 * 180.02562 * 20 19 18 22 22 C 1.34510 * 106.83562 * 0.02562 * 21 20 19 23 23 O 1.34301 * 108.42483 * 359.73532 * 22 21 20 24 24 O 1.33965 * 108.76184 * 359.57754 * 6 5 4 25 25 H 1.08994 * 109.47321 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46655 * 300.00137 * 1 2 3 27 27 H 1.09001 * 109.46951 * 60.00154 * 1 2 3 28 28 H 1.09008 * 109.46990 * 239.99699 * 2 1 3 29 29 H 1.09001 * 109.46951 * 119.99845 * 2 1 3 30 30 H 1.07999 * 126.16588 * 0.02562 * 4 3 2 31 31 H 1.08995 * 109.47177 * 209.69923 * 7 6 5 32 32 H 1.09004 * 109.47270 * 329.70172 * 7 6 5 33 33 H 1.08998 * 109.46608 * 59.47699 * 9 8 7 34 34 H 1.08996 * 109.46792 * 179.47358 * 9 8 7 35 35 H 0.96996 * 120.00623 * 179.97438 * 13 12 10 36 36 H 1.09005 * 109.47160 * 315.66550 * 18 8 7 37 37 H 1.08999 * 109.47003 * 75.66205 * 18 8 7 38 38 H 1.08001 * 126.58040 * 0.04726 * 20 19 18 39 39 H 1.07996 * 126.57946 * 179.97438 * 21 20 19 40 40 H 1.08007 * 125.78555 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2984 2.1731 1.0806 5 7 2.7278 3.3718 0.6477 6 6 2.7216 3.3721 -0.6549 7 6 3.1291 4.5262 -1.5341 8 7 4.5674 4.4399 -1.8201 9 6 5.3597 4.6345 -0.5984 10 6 5.0727 5.9986 -0.0256 11 1 4.4190 6.6785 -0.5516 12 6 5.6446 6.3784 1.1701 13 7 6.4410 5.5506 1.8104 14 14 5.2895 8.0694 1.8797 15 1 3.8306 8.2092 2.1195 16 1 6.0192 8.2309 3.1630 17 1 5.7356 9.1122 0.9213 18 6 4.9564 5.4030 -2.8588 19 6 6.3155 5.0386 -3.3982 20 6 6.5556 4.2200 -4.4381 21 6 7.9593 4.1607 -4.5972 22 6 8.4929 4.9462 -3.6446 23 8 7.4924 5.4797 -2.9248 24 8 2.2989 2.1756 -1.0841 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.1911 1.8687 2.1112 31 1 2.5697 4.4861 -2.4687 32 1 2.9159 5.4652 -1.0231 33 1 5.0944 3.8704 0.1322 34 1 6.4203 4.5564 -0.8370 35 1 6.8437 5.8179 2.6514 36 1 4.2262 5.3796 -3.6678 37 1 4.9920 6.4047 -2.4305 38 1 5.8178 3.7068 -5.0369 39 1 8.4993 3.5929 -5.3404 40 1 9.5470 5.1215 -3.4878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530904780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:16 Heat of formation + Delta-G solvation = 21.414630 kcal Electronic energy + Delta-G solvation = -23161.945342 eV Core-core repulsion = 19751.603557 eV Total energy + Delta-G solvation = -3410.341785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.18409 -43.31575 -38.73368 -35.57296 -35.14026 -34.57064 -33.76334 -32.01913 -30.39802 -28.88823 -27.34981 -25.98657 -24.54811 -23.45564 -22.51475 -22.35749 -21.51813 -21.06968 -18.86114 -17.89691 -17.85158 -17.65217 -16.98587 -16.73450 -15.98965 -15.81949 -15.69529 -15.47472 -15.20432 -14.71234 -14.27749 -14.06767 -13.54516 -13.48304 -13.42603 -13.26197 -13.17316 -12.87385 -12.72020 -12.57166 -12.54080 -12.32656 -12.15375 -12.04156 -11.97012 -11.70914 -11.17908 -10.69336 -10.51998 -9.63338 -9.30095 -9.12295 -8.09803 -6.24336 0.52096 0.95451 1.36723 1.39945 1.45594 1.72387 1.85353 1.90457 2.35235 2.41311 3.19452 3.22628 3.52993 3.84112 3.93932 4.10546 4.16191 4.25529 4.30637 4.35839 4.36656 4.52670 4.56992 4.66655 4.75412 4.87083 4.99671 5.02078 5.07120 5.14812 5.22216 5.28630 5.32169 5.35521 5.39834 5.46279 5.77795 5.79134 5.92514 6.16650 6.29123 6.45196 6.89196 6.98478 7.44512 8.96168 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.006142 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.376789 B = 4557.999502 C = 6550.938485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.032 4.032 3 C -0.048 4.048 4 C -0.072 4.072 5 N -0.498 5.498 6 C 0.197 3.803 7 C 0.155 3.845 8 N -0.537 5.537 9 C 0.210 3.790 10 C -0.538 4.538 11 H 0.062 0.938 12 C 0.016 3.984 13 N -0.927 5.927 14 Si 0.951 3.049 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.267 1.267 18 C 0.134 3.866 19 C -0.012 4.012 20 C -0.206 4.206 21 C -0.220 4.220 22 C -0.063 4.063 23 O -0.201 6.201 24 O -0.206 6.206 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.193 0.807 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.007 0.993 34 H -0.005 1.005 35 H 0.259 0.741 36 H 0.132 0.868 37 H 0.049 0.951 38 H 0.166 0.834 39 H 0.174 0.826 40 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.656 -8.276 -10.520 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.101 4.101 4 C -0.210 4.210 5 N -0.227 5.227 6 C -0.011 4.011 7 C 0.027 3.973 8 N -0.262 5.262 9 C 0.084 3.916 10 C -0.577 4.577 11 H 0.080 0.920 12 C -0.183 4.183 13 N -0.567 5.567 14 Si 0.776 3.224 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.192 1.192 18 C 0.007 3.993 19 C -0.063 4.063 20 C -0.226 4.226 21 C -0.239 4.239 22 C -0.130 4.130 23 O -0.097 6.097 24 O -0.093 6.093 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.210 0.790 31 H 0.146 0.854 32 H 0.093 0.907 33 H 0.026 0.974 34 H 0.013 0.987 35 H 0.068 0.932 36 H 0.150 0.850 37 H 0.067 0.933 38 H 0.183 0.817 39 H 0.192 0.808 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.257 -8.055 -9.988 14.741 hybrid contribution 0.177 1.004 0.935 1.384 sum -7.081 -7.050 -9.052 13.483 Atomic orbital electron populations 1.21770 0.92517 1.03708 1.02102 1.20264 0.97265 0.83806 1.05606 1.24212 1.04712 0.97307 0.83881 1.23490 1.05663 0.90227 1.01608 1.70608 1.17283 1.24206 1.10617 1.26257 0.98475 0.86317 0.90005 1.20359 0.89778 0.89741 0.97449 1.62425 1.02920 1.50121 1.10772 1.19316 0.91307 0.94955 0.86043 1.21708 1.28420 1.01156 1.06382 0.91963 1.25689 0.94795 1.00543 0.97299 1.70080 1.32478 1.37536 1.16642 0.85724 0.78376 0.80553 0.77704 1.19627 1.21288 1.19224 1.20511 0.89195 0.94700 0.94868 1.22567 0.86362 1.00705 0.96630 1.21814 0.97204 1.02762 1.00810 1.22123 0.94257 1.04541 1.02941 1.24715 0.93970 0.99859 0.94456 1.84139 1.15638 1.58520 1.51432 1.84354 1.64171 1.23582 1.37191 0.88950 0.92457 0.93225 0.89072 0.86775 0.79013 0.85389 0.90654 0.97444 0.98735 0.93178 0.85047 0.93282 0.81671 0.80844 0.75971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.90 71.98 0.71 -1.55 16 2 C -0.03 -0.63 6.49 29.85 0.19 -0.44 16 3 C -0.05 -1.50 6.64 24.79 0.16 -1.33 16 4 C -0.07 -2.63 11.80 83.39 0.98 -1.65 16 5 N -0.50 -22.80 10.52 -303.83 -3.20 -26.00 16 6 C 0.20 8.14 6.99 88.34 0.62 8.76 16 7 C 0.15 5.87 5.38 85.56 0.46 6.33 16 8 N -0.54 -23.00 4.65 -909.95 -4.23 -27.23 16 9 C 0.21 11.51 4.79 85.56 0.41 11.92 16 10 C -0.54 -30.29 7.34 25.60 0.19 -30.10 16 11 H 0.06 3.33 5.95 -2.91 -0.02 3.31 16 12 C 0.02 0.93 5.46 84.66 0.46 1.39 16 13 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16 14 Si 0.95 45.94 29.54 68.60 2.03 47.96 16 15 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 C 0.13 4.93 5.35 85.56 0.46 5.39 16 19 C -0.01 -0.47 6.10 24.83 0.15 -0.32 16 20 C -0.21 -6.54 10.81 22.19 0.24 -6.30 16 21 C -0.22 -6.33 10.91 22.19 0.24 -6.08 16 22 C -0.06 -2.01 12.09 66.97 0.81 -1.20 16 23 O -0.20 -8.44 10.08 -2.49 -0.03 -8.47 16 24 O -0.21 -7.55 10.78 -3.73 -0.04 -7.59 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.19 5.90 8.06 -2.91 -0.02 5.88 16 31 H 0.13 3.58 7.86 -2.39 -0.02 3.56 16 32 H 0.08 3.10 6.40 -2.38 -0.02 3.09 16 33 H 0.01 0.46 6.68 -2.39 -0.02 0.45 16 34 H -0.01 -0.33 6.93 -2.39 -0.02 -0.35 16 35 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.13 3.54 7.82 -2.38 -0.02 3.52 16 37 H 0.05 2.00 6.35 -2.39 -0.02 1.98 16 38 H 0.17 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.17 3.68 8.06 -2.91 -0.02 3.65 16 40 H 0.22 5.27 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -77.80 339.44 1.95 -75.84 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 1.04 Total: 18.76 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 6.09 Total: -15.18 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -7.14 Total: -111.33 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.07 Total: -16.06 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -77.80 1.95 -75.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530904780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.257 kcal (2) G-P(sol) polarization free energy of solvation -77.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds